jgi.p|Nanoce1779_2|155863, mRNA_1206 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|155863
Unique NamemRNA_1206
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1297
Alignment locationscaffold_2:1498041..1499337 +

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Properties
Property NameValue
TranscriptId155949
TrackFilteredModels2
ProteinId155863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1498041..1499337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155863gene_1206Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155863mRNA_1206-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1206CDS_1206Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1206 ID=mRNA_1206|Name=jgi.p|Nanoce1779_2|155863|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp
GGAGGTGGTGGAGGAGGAAGGGAGTTTGGGGGGAACTTTGCTTTTCCATT
ACCACCGAGGGCGGACGTAGCACGCGCGAATTTGAAGAAGGCGAGTGAGG
GGGCTTGGAGGGCTTTGAAAGAGGGAATGGGGATAGCCAGGGAGTCCGTC
GGAATGGCAGTAGAGTATGCGGAGCAATGGCGGGCGCGTAGAGGAGGAAG
GGGAGGAGGAGGGAGGGGATGAGGACGGATGTAATCTAGTGTGTTATACA
AGAGGTCCCAAAACGACAAATGAAGAAAGAAAAATTCTCGTGTGGGAACG
TCTCCAAATGGTGCGATCAAAATTGCTTAGAAAGACTGCGGAATCGAGGC
GAGGCTATCGGCGAATTTGTTGCGGCGATGCAGTTGAGGTTCTTCTCTCC
GATCAACCTCCTGAGGAGATATACATGCCCTGAAGCTTTCGTCTTTACCA
TGGGTGGTGATGAAGTCTTTTGCCAGCCAGCTCATTTTGGTGGGAGGGGG
GTCATATTATTGTCTGCCAATGTCGCCGCCTCCTCCGTCCATCCCACTTC
TTCTCACAGCTCCAATTCACCATCACGGTGCCCCACCAAACACCCAGTAA
GACACCTGTCACTTACATCTAAGTATCCCTTTACCCCCCTTCAGGGACGC
ACAGAGCGTCCACGCACAATGGCGACCCAAAAAATCGAGTCGGAGGCGCC
GCTGGAGCAGCAGTTGCAGCGTGCGCAGGACGTGCCCTCCTCGACCGAAG
CGACAGCAACCTCCACGTTTGAATGCCAGCCAAAACTACTACTGGTCAGA
CCGCCAAGGCCTTTTCGCTTCTGCGAAGAATGCAATTTGAACAGATACTT
TGAAGACTCAGATTACGAAAGGGAGGCTGAATTAGCGCGCACCCGACCTT
GGGGAACACGGCCGCCCTCTGAAACATCCTGGGCTCGACTGTCGGAAGCG
ACTGACCTGCTCTCCACCATTTTCCGCTTTTTGCAGCTGCGGGAGTTGAT
GGCCATGTAAGTTCTGGTCCACGCTCTCCTCTTCCCCTTTTCGAGTGTCT
CATGCCTGGTTCTACCCCTCCTATCTCATGTCGACCTTCCAGCCTCGTAC
ACCATCCCATCCCTCATTCCTTGCTTCCTCATTCGCTCTCTCCCCTCACA
GCTCTCGATGCGGTTCCCATGCTTGCTTGCAAGCATCTCGCAAAGATGGC
ATGTGGAAGGAGATAGCCTTGAGGATGTGGGCCACCCTGATGGATGCTAC
CCTAGGAGAGGGGACGCAGGACGAGGCGTCTAAATTGGTACGGACGG
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protein sequence of jgi.p|Nanoce1779_2|155863

>mRNA_1206-protein ID=mRNA_1206-protein|Name=jgi.p|Nanoce1779_2|155863|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MKKEKFSCGNVSKWCDQNCLERLRNRGEAIGEFVAAMQLRFFSPINLLRR
YTCPEAFVFTMGGDEVFCQPAHFGGRGVILLSANVAASSVHPTSSHSSNS
PSRCPTKHPVRHLSLTSKYPFTPLQGRTERPRTMATQKIESEAPLEQQLQ
RAQDVPSSTEATATSTFECQPKLLLVRPPRPFRFCEECNLNRYFEDSDYE
REAELARTRPWGTRPPSETSWARLSEATDLLSTIFRFLQLRELMAM*
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mRNA from alignment at scaffold_2:1498041..1499337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1206 ID=mRNA_1206|Name=jgi.p|Nanoce1779_2|155863|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp|location=Sequence derived from alignment at scaffold_2:1498041..1499337+ (Nannochloropsis oceanica)
GGAGGTGGTGGAGGAGGAAGGGAGTTTGGGGGGAACTTTGCTTTTCCATT
ACCACCGAGGGCGGACGTAGCACGCGCGAATTTGAAGAAGGCGAGTGAGG
GGGCTTGGAGGGCTTTGAAAGAGGGAATGGGGATAGCCAGGGAGTCCGTC
GGAATGGCAGTAGAGTATGCGGAGCAATGGCGGGCGCGTAGAGGAGGAAG
GGGAGGAGGAGGGAGGGGATGAGGACGGATGTAATCTAGTGTGTTATACA
AGAGGTCCCAAAACGACAAATGAAGAAAGAAAAATTCTCGTGTGGGAACG
TCTCCAAATGGTGCGATCAAAATTGCTTAGAAAGACTGCGGAATCGAGGC
GAGGCTATCGGCGAATTTGTTGCGGCGATGCAGTTGAGGTTCTTCTCTCC
GATCAACCTCCTGAGGAGATATACATGCCCTGAAGCTTTCGTCTTTACCA
TGGGTGGTGATGAAGTCTTTTGCCAGCCAGCTCATTTTGGTGGGAGGGGG
GTCATATTATTGTCTGCCAATGTCGCCGCCTCCTCCGTCCATCCCACTTC
TTCTCACAGCTCCAATTCACCATCACGGTGCCCCACCAAACACCCAGTAA
GACACCTGTCACTTACATCTAAGTATCCCTTTACCCCCCTTCAGGGACGC
ACAGAGCGTCCACGCACAATGGCGACCCAAAAAATCGAGTCGGAGGCGCC
GCTGGAGCAGCAGTTGCAGCGTGCGCAGGACGTGCCCTCCTCGACCGAAG
CGACAGCAACCTCCACGTTTGAATGCCAGCCAAAACTACTACTGGTCAGA
CCGCCAAGGCCTTTTCGCTTCTGCGAAGAATGCAATTTGAACAGATACTT
TGAAGACTCAGATTACGAAAGGGAGGCTGAATTAGCGCGCACCCGACCTT
GGGGAACACGGCCGCCCTCTGAAACATCCTGGGCTCGACTGTCGGAAGCG
ACTGACCTGCTCTCCACCATTTTCCGCTTTTTGCAGCTGCGGGAGTTGAT
GGCCATGTAAGTTCTGGTCCACGCTCTCCTCTTCCCCTTTTCGAGTGTCT
CATGCCTGGTTCTACCCCTCCTATCTCATGTCGACCTTCCAGCCTCGTAC
ACCATCCCATCCCTCATTCCTTGCTTCCTCATTCGCTCTCTCCCCTCACA
GCTCTCGATGCGGTTCCCATGCTTGCTTGCAAGCATCTCGCAAAGATGGC
ATGTGGAAGGAGATAGCCTTGAGGATGTGGGCCACCCTGATGGATGCTAC
CCTAGGAGAGGGGACGCAGGACGAGGCGTCTAAATTGGTACGGACGG
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Coding sequence (CDS) from alignment at scaffold_2:1498041..1499337+

>mRNA_1206 ID=mRNA_1206|Name=jgi.p|Nanoce1779_2|155863|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_2:1498041..1499337+ (Nannochloropsis oceanica)
ATGAAGAAAGAAAAATTCTCGTGTGGGAACGTCTCCAAATGGTGCGATCA
AAATTGCTTAGAAAGACTGCGGAATCGAGGCGAGGCTATCGGCGAATTTG
TTGCGGCGATGCAGTTGAGGTTCTTCTCTCCGATCAACCTCCTGAGGAGA
TATACATGCCCTGAAGCTTTCGTCTTTACCATGGGTGGTGATGAAGTCTT
TTGCCAGCCAGCTCATTTTGGTGGGAGGGGGGTCATATTATTGTCTGCCA
ATGTCGCCGCCTCCTCCGTCCATCCCACTTCTTCTCACAGCTCCAATTCA
CCATCACGGTGCCCCACCAAACACCCAGTAAGACACCTGTCACTTACATC
TAAGTATCCCTTTACCCCCCTTCAGGGACGCACAGAGCGTCCACGCACAA
TGGCGACCCAAAAAATCGAGTCGGAGGCGCCGCTGGAGCAGCAGTTGCAG
CGTGCGCAGGACGTGCCCTCCTCGACCGAAGCGACAGCAACCTCCACGTT
TGAATGCCAGCCAAAACTACTACTGGTCAGACCGCCAAGGCCTTTTCGCT
TCTGCGAAGAATGCAATTTGAACAGATACTTTGAAGACTCAGATTACGAA
AGGGAGGCTGAATTAGCGCGCACCCGACCTTGGGGAACACGGCCGCCCTC
TGAAACATCCTGGGCTCGACTGTCGGAAGCGACTGACCTGCTCTCCACCA
TTTTCCGCTTTTTGCAGCTGCGGGAGTTGATGGCCATGTAA
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Synonyms
Publications