jgi.p|Nanoce1779_2|575727, mRNA_1201 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575727
Unique Name	mRNA_1201
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2024
Alignment location	scaffold_2:1485278..1487301 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575813
Track	FilteredModels2
ProteinId	575727

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1485278..1487301 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575727	gene_1201	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575727	mRNA_1201-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1201	CDS_1201	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1485278..1487301-
coding sequence from alignment at scaffold_2:1485278..1487301-

mRNA sequence

>mRNA_1201 ID=mRNA_1201|Name=jgi.p|Nanoce1779_2|575727|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
GCGAGGGCGGGAAGGAGGAAGGAGTGGAGGTGGTGGGAGTAGTGGCGAGG
AGCAAGGTCTTCTGGGCTTGCGAGATGAGGAGGGCTTGGATCGTGGGGTG
GTGGGAGCGAGGGAGGGCGGCCGCCAGACAGAAGTAACGGCTGCGGTAGG
TCAATAGAGCGAGGACGCGAGGGAGGGCGAGATACGCCCGTTGTCGGATG
GTGTCGTCAGCGAGGAAGACCATGCATCCCGTCAGGCCCTTTATCAGGCT
TGCCCATGTGTCTTCTTCTTCCCTGTCTTCTGTTGCTCCTCCTTCTTCCT
TCCCTCCCTCGTTGCGGTCACTTCTACTACTACCGCCACCAAGCGCCCGG
CACTCCAAAACACCTTCCCCTCCCCTTTTTACTCTTCCCCTTTCCCCTCC
TTGCGAGGGGAATGATGCAAGTGTCCCTCTTTCCAATAGAGCAAGGCCAC
AAGGCGCGGCCTGAGGCTTCTGCAGTAGAAACGCGGCAGGCACCGCCAGC
AGCTGCCCGACGTAGGCACTGGCCAGCACTCGAGGAAGCAGGGATACAGG
GAGGGAGGGGGGATGGATAAAAAGGTGATAGGCTGCGAGGCTCAGGCCTG
CAGGTTCCCAGGCAAAGGGGGTGGAGGCCACGGCAGAAGCAGGAATGAGA
GGACCAACCTCAATTGCAGTAAACCGCTTTCTTTCTCTGCTCACGCCGTC
TTTCTCGTCGGTGATGTTGTCGTTGTATTCATCCGTCTCATTTATACTTG
TGTTTCGGGCGCCGCTCTGCACATAGTGTGTGTGAGGAATGGTTCTCCGC
TGCTCTTTCAGGCCGCGGTGATGTCGGAGCAGGGTCTCGAAGCTGACCAA
GTGAGTACAGGTAAGGGCCCGGGCGAGGACGGCAGTCACGCGCTCGGCGA
AACAGAAGGAATTCGATGGCTGGTGCATGTGTACTTTTCCAAGGGCGGAG
GAAGGCGGTGGTGGTGGAGGGAGGGGCGGTGCCATGAGCAGCAGCGCCAG
CAGGACGCCTATCACGTAGCCCATTTCCACCACCGCAGCCGCTGCATCCT
CCACCGACTCCTCTTCCATCATTTGCCCTCTCCTTGTTACAATCCTAGGT
ACCAAGGCCTCTACTGCTTCCAGCACCGACATAAGAATGGCCTGCGCTTC
TTTTCCCGTCAATCGCCGTTCCTTTCCCTTCCCATCCTCCTCCTCTTCCA
CGTCTCCTTTCTCTTCCTCCTCCTCTTCCTCCCTTTCCCCGTCCTCTCCC
TCCTCCATCGCAGCCAGCGCCTTGACAGCTTCTTCCCGCCATACCCGACA
AATCGAGTCAAGGAAGCTTTTGCGTCGCGGAGCAGGAATGACAGCAAGCG
CAGGCGGCATCTGTGCTACGAGCCAAGGGACGAATGAAGGGTGGGTGCGA
CGTGGAGCTAACGCCAAGGCCTCCTGTAGCATGAGCAAGCGTTCCCGCCC
GCTATGCAGACCCAATATGGCGGAAAGGAGAGGGATAAGGAAGGGAGAGG
GAGACGAGGAGGTAGAGGAGAAAGGAGAAGCGGAAGAGGAGTCCATGGCA
TCGCTGCTGCTGCTGCTGCAGTCATCGCCACCTCGAGCCCACGGCACGAG
AGCCTCAAAAAGATCCCAGCCGATGAAATGCAGTACCTTGCTCTCAGACT
CCCTCATCGAAGCATCATCGTCTTTGTTCCCAGCAAAAAATGTGTGCCAC
AGGCGGGCGACGATGGAGGGAACGGCTCTGACATCGGTGAGGCGGGCTTG
CACGACTTGGCCTAGCGCTTGGCCAGCGTTACTGTCCGAAGTCGAAAGCA
AGGCCTGCTCCAACAGTGCCGTCAGCTCGGAGTCGTCGTCCTCGCCATCG
GCCTGCATGCTTGACGTCCTGTCGAGTACGGTTGGGTTTGATTGAGTGGG
GGTTGAAGGGGCCGCAGCGATGGAGCGTTAAGCCGATACGCCAGGCCAAA
GACTTCTCCGATCCCGCCGCATACATGCGTCCGGCTTGAACGGAGGATGT
GCCTAGGTCTATTTGTGTGTCTTG

protein sequence of jgi.p|Nanoce1779_2|575727

>mRNA_1201-protein ID=mRNA_1201-protein|Name=jgi.p|Nanoce1779_2|575727|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MDKKVIGCEAQACRFPGKGGGGHGRSRNERTNLNCSKPLSFSAHAVFLVG
DVVVVFIRLIYTCVSGAALHIVCVRNGSPLLFQAAVMSEQGLEADQVSTG
KGPGEDGSHALGETEGIRWLVHVYFSKGGGRRWWWREGRCHEQQRQQDAY
HVAHFHHRSRCILHRLLFHHLPSPCYNPRYQGLYCFQHRHKNGLRFFSRQ
SPFLSLPILLLFHVSFLFLLLFLPFPVLSLLHRSQRLDSFFPPYPTNRVK
EAFASRSRNDSKRRRHLCYEPRDE*

mRNA from alignment at scaffold_2:1485278..1487301-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1201 ID=mRNA_1201|Name=jgi.p|Nanoce1779_2|575727|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at scaffold_2:1485278..1487301- (Nannochloropsis oceanica)
GCGAGGGCGGGAAGGAGGAAGGAGTGGAGGTGGTGGGAGTAGTGGCGAGG
AGCAAGGTCTTCTGGGCTTGCGAGATGAGGAGGGCTTGGATCGTGGGGTG
GTGGGAGCGAGGGAGGGCGGCCGCCAGACAGAAGTAACGGCTGCGGTAGG
TCAATAGAGCGAGGACGCGAGGGAGGGCGAGATACGCCCGTTGTCGGATG
GTGTCGTCAGCGAGGAAGACCATGCATCCCGTCAGGCCCTTTATCAGGCT
TGCCCATGTGTCTTCTTCTTCCCTGTCTTCTGTTGCTCCTCCTTCTTCCT
TCCCTCCCTCGTTGCGGTCACTTCTACTACTACCGCCACCAAGCGCCCGG
CACTCCAAAACACCTTCCCCTCCCCTTTTTACTCTTCCCCTTTCCCCTCC
TTGCGAGGGGAATGATGCAAGTGTCCCTCTTTCCAATAGAGCAAGGCCAC
AAGGCGCGGCCTGAGGCTTCTGCAGTAGAAACGCGGCAGGCACCGCCAGC
AGCTGCCCGACGTAGGCACTGGCCAGCACTCGAGGAAGCAGGGATACAGG
GAGGGAGGGGGGATGGATAAAAAGGTGATAGGCTGCGAGGCTCAGGCCTG
CAGGTTCCCAGGCAAAGGGGGTGGAGGCCACGGCAGAAGCAGGAATGAGA
GGACCAACCTCAATTGCAGTAAACCGCTTTCTTTCTCTGCTCACGCCGTC
TTTCTCGTCGGTGATGTTGTCGTTGTATTCATCCGTCTCATTTATACTTG
TGTTTCGGGCGCCGCTCTGCACATAGTGTGTGTGAGGAATGGTTCTCCGC
TGCTCTTTCAGGCCGCGGTGATGTCGGAGCAGGGTCTCGAAGCTGACCAA
GTGAGTACAGGTAAGGGCCCGGGCGAGGACGGCAGTCACGCGCTCGGCGA
AACAGAAGGAATTCGATGGCTGGTGCATGTGTACTTTTCCAAGGGCGGAG
GAAGGCGGTGGTGGTGGAGGGAGGGGCGGTGCCATGAGCAGCAGCGCCAG
CAGGACGCCTATCACGTAGCCCATTTCCACCACCGCAGCCGCTGCATCCT
CCACCGACTCCTCTTCCATCATTTGCCCTCTCCTTGTTACAATCCTAGGT
ACCAAGGCCTCTACTGCTTCCAGCACCGACATAAGAATGGCCTGCGCTTC
TTTTCCCGTCAATCGCCGTTCCTTTCCCTTCCCATCCTCCTCCTCTTCCA
CGTCTCCTTTCTCTTCCTCCTCCTCTTCCTCCCTTTCCCCGTCCTCTCCC
TCCTCCATCGCAGCCAGCGCCTTGACAGCTTCTTCCCGCCATACCCGACA
AATCGAGTCAAGGAAGCTTTTGCGTCGCGGAGCAGGAATGACAGCAAGCG
CAGGCGGCATCTGTGCTACGAGCCAAGGGACGAATGAAGGGTGGGTGCGA
CGTGGAGCTAACGCCAAGGCCTCCTGTAGCATGAGCAAGCGTTCCCGCCC
GCTATGCAGACCCAATATGGCGGAAAGGAGAGGGATAAGGAAGGGAGAGG
GAGACGAGGAGGTAGAGGAGAAAGGAGAAGCGGAAGAGGAGTCCATGGCA
TCGCTGCTGCTGCTGCTGCAGTCATCGCCACCTCGAGCCCACGGCACGAG
AGCCTCAAAAAGATCCCAGCCGATGAAATGCAGTACCTTGCTCTCAGACT
CCCTCATCGAAGCATCATCGTCTTTGTTCCCAGCAAAAAATGTGTGCCAC
AGGCGGGCGACGATGGAGGGAACGGCTCTGACATCGGTGAGGCGGGCTTG
CACGACTTGGCCTAGCGCTTGGCCAGCGTTACTGTCCGAAGTCGAAAGCA
AGGCCTGCTCCAACAGTGCCGTCAGCTCGGAGTCGTCGTCCTCGCCATCG
GCCTGCATGCTTGACGTCCTGTCGAGTACGGTTGGGTTTGATTGAGTGGG
GGTTGAAGGGGCCGCAGCGATGGAGCGTTAAGCCGATACGCCAGGCCAAA
GACTTCTCCGATCCCGCCGCATACATGCGTCCGGCTTGAACGGAGGATGT
GCCTAGGTCTATTTGTGTGTCTTG

Coding sequence (CDS) from alignment at scaffold_2:1485278..1487301-

>mRNA_1201 ID=mRNA_1201|Name=jgi.p|Nanoce1779_2|575727|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_2:1485278..1487301- (Nannochloropsis oceanica)
ATGGATAAAAAGGTGATAGGCTGCGAGGCTCAGGCCTGCAGGTTCCCAGG
CAAAGGGGGTGGAGGCCACGGCAGAAGCAGGAATGAGAGGACCAACCTCA
ATTGCAGTAAACCGCTTTCTTTCTCTGCTCACGCCGTCTTTCTCGTCGGT
GATGTTGTCGTTGTATTCATCCGTCTCATTTATACTTGTGTTTCGGGCGC
CGCTCTGCACATAGTGTGTGTGAGGAATGGTTCTCCGCTGCTCTTTCAGG
CCGCGGTGATGTCGGAGCAGGGTCTCGAAGCTGACCAAGTGAGTACAGGT
AAGGGCCCGGGCGAGGACGGCAGTCACGCGCTCGGCGAAACAGAAGGAAT
TCGATGGCTGGTGCATGTGTACTTTTCCAAGGGCGGAGGAAGGCGGTGGT
GGTGGAGGGAGGGGCGGTGCCATGAGCAGCAGCGCCAGCAGGACGCCTAT
CACGTAGCCCATTTCCACCACCGCAGCCGCTGCATCCTCCACCGACTCCT
CTTCCATCATTTGCCCTCTCCTTGTTACAATCCTAGGTACCAAGGCCTCT
ACTGCTTCCAGCACCGACATAAGAATGGCCTGCGCTTCTTTTCCCGTCAA
TCGCCGTTCCTTTCCCTTCCCATCCTCCTCCTCTTCCACGTCTCCTTTCT
CTTCCTCCTCCTCTTCCTCCCTTTCCCCGTCCTCTCCCTCCTCCATCGCA
GCCAGCGCCTTGACAGCTTCTTCCCGCCATACCCGACAAATCGAGTCAAG
GAAGCTTTTGCGTCGCGGAGCAGGAATGACAGCAAGCGCAGGCGGCATCT
GTGCTACGAGCCAAGGGACGAATGA

Synonyms

Publications