jgi.p|Nanoce1779_2|576289, mRNA_120 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576289
Unique Name	mRNA_120
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1675
Alignment location	scaffold_3:320397..322071 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576375
Track	FilteredModels2
ProteinId	576289

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:320397..322071 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576289	gene_120	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576289	mRNA_120-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_120	CDS_120	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:320397..322071-
coding sequence from alignment at scaffold_3:320397..322071-

mRNA sequence

>mRNA_120 ID=mRNA_120|Name=jgi.p|Nanoce1779_2|576289|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp
ACAGAACAAGAGGGACTCGCTCCGTGTGCACTGCAGCCCTTCGTCAGTCT
GTCCCACCACCCAGCACAGACAGCATTATCACCATCGACATCCACGTCGC
TTAGGCCACACGACCAAGATGGCAGCCAATCAAGACTATAACAACCTGTT
TGGGAGCTCCGACGAGGAGAGCAGTGGTGAGGAAGAGGCTGAAGAGGTGG
AGCAGCAGCGACAGAAGCCCGCGACAAACTCAGCGCCCGCTCAAGCGGCT
GCCTCTTCCGCCGCGGCTGCAGGCGGGGACGCCAGCAGTAGCAGTGAAGA
CGAGAGCAGTGACGACGAGGACGAACGTCTCTCGGCCAAGAAGCGTTTAC
AGAAAAAAGGCGTGCCCTTAGCATCTTTGTCGTCGGACGAAAGCGAGAGC
GAGGATGAGGAAGCAGCAGCAGCAGCAACCGCTTCCCGGCCTCCCCCCAA
GGCCCGCACCACAGGCAACGATGCCTTGAAGCGAGCCACGGCTGACTTTG
ACGACGAGGAAGAGGAAGAAGAGGACCACGCGCGTAAATCCCAGACACTC
CCAGATTTGAGCAGCGATGGGAGCAGTAGCAGCAGCAGTAGTAGTGGGGA
GAGTGACTCGTCGGATGATGAGGGGGACTCACGCCGACGGAAGAAGGGGG
CGCTCAAGAAGAAGTCGATGAAGACGAAGAGCAACATGATTAAGAAAAAG
ATCAAGGCCTCTAAGTCTAGGAAGGAGCGGGTTGGTCGCGAAGACGGAGA
CGGGGAGGAGGACGACGGTGCCGGGAGGAGCAGCAGCCAAGGCGGTGGAG
GAGGGGGTGATGCTCGTCGGGTCGGACGAGAACTGACGGTGGTGGAACAG
GCATTGGCGTCTTTCAAGCGGAATCGGTCGCAGAAGTTGCCGGATAAACA
GGTGCAAGAAATGACCCAGCGATTGATTGATGTGATGGAGGTGGCGGCAA
AGGAAGACAGGCAGGCCATGATGCACAACAAGCCCGCGATACAGAAACTC
AAGAGTTTGACCGAGGTTCTGGATTTGTTGAAGAGCAAGCATCTACAGGG
TGCCTTGGTGGATAATGGGCAGGTGCTGGGCTTGATCAAGCAGTGGCTGC
AACCGCTGCCGGATAAGAGCTTGCCATTGTTCGCTGTGCGCACGCCGCTG
ATTGATTATCTGCTGACTGCACGGGTGGAGGTGCACCGGCTCAAGGAGAG
CGGAGTAGGCCGCGTCATCCAGCAGCTGAAAAAACACCCGGAGGAGACGG
TGGAGAACAAGGCGAAGCTTACGGAGATCGTCGATAATTGGTCCCGCCTT
ATCACGGGCAAGGGCACCACCTTGAAGAGCCGGACGAGCGAGGAGGAGAT
GGAGGGCCGGGAGGCACGGCAGGCCCAGCAGGCCAAGGCAAACGCAGGAG
GAGGGGGCTTTATCATGTCGACGACGGCGCGGGGGGTGGTGATCCCGATC
CGGACGGGCTTCAACTTCAAGAAGGTGGCCTTGACATTTCGGGAGGAATT
TGATAGGGGGCAGGGGAAGGAGGACGAGGCTATGGAGGTGAACGAGCGGG
AGCCTGGTAGGGAAGGGGGGGCAGAGAGTCGGACCAGCCGGGTACGAAAG
GCTTTGAAGGACATGGGGAGGGGGGGGTAGCAAAAAGTTGAGGCATGAGA
GCGTGCGGCATGGCCATTAGAGAGA

protein sequence of jgi.p|Nanoce1779_2|576289

>mRNA_120-protein ID=mRNA_120-protein|Name=jgi.p|Nanoce1779_2|576289|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MAANQDYNNLFGSSDEESSGEEEAEEVEQQRQKPATNSAPAQAAASSAAA
AGGDASSSSEDESSDDEDERLSAKKRLQKKGVPLASLSSDESESEDEEAA
AAATASRPPPKARTTGNDALKRATADFDDEEEEEEDHARKSQTLPDLSSD
GSSSSSSSSGESDSSDDEGDSRRRKKGALKKKSMKTKSNMIKKKIKASKS
RKERVGREDGDGEEDDGAGRSSSQGGGGGGDARRVGRELTVVEQALASFK
RNRSQKLPDKQVQEMTQRLIDVMEVAAKEDRQAMMHNKPAIQKLKSLTEV
LDLLKSKHLQGALVDNGQVLGLIKQWLQPLPDKSLPLFAVRTPLIDYLLT
ARVEVHRLKESGVGRVIQQLKKHPEETVENKAKLTEIVDNWSRLITGKGT
TLKSRTSEEEMEGREARQAQQAKANAGGGGFIMSTTARGVVIPIRTGFNF
KKVALTFREEFDRGQGKEDEAMEVNEREPGREGGAESRTSRVRKALKDMG
RGG*

mRNA from alignment at scaffold_3:320397..322071-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_120 ID=mRNA_120|Name=jgi.p|Nanoce1779_2|576289|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp|location=Sequence derived from alignment at scaffold_3:320397..322071- (Nannochloropsis oceanica)
ACAGAACAAGAGGGACTCGCTCCGTGTGCACTGCAGCCCTTCGTCAGTCT
GTCCCACCACCCAGCACAGACAGCATTATCACCATCGACATCCACGTCGC
TTAGGCCACACGACCAAGATGGCAGCCAATCAAGACTATAACAACCTGTT
TGGGAGCTCCGACGAGGAGAGCAGTGGTGAGGAAGAGGCTGAAGAGGTGG
AGCAGCAGCGACAGAAGCCCGCGACAAACTCAGCGCCCGCTCAAGCGGCT
GCCTCTTCCGCCGCGGCTGCAGGCGGGGACGCCAGCAGTAGCAGTGAAGA
CGAGAGCAGTGACGACGAGGACGAACGTCTCTCGGCCAAGAAGCGTTTAC
AGAAAAAAGGCGTGCCCTTAGCATCTTTGTCGTCGGACGAAAGCGAGAGC
GAGGATGAGGAAGCAGCAGCAGCAGCAACCGCTTCCCGGCCTCCCCCCAA
GGCCCGCACCACAGGCAACGATGCCTTGAAGCGAGCCACGGCTGACTTTG
ACGACGAGGAAGAGGAAGAAGAGGACCACGCGCGTAAATCCCAGACACTC
CCAGATTTGAGCAGCGATGGGAGCAGTAGCAGCAGCAGTAGTAGTGGGGA
GAGTGACTCGTCGGATGATGAGGGGGACTCACGCCGACGGAAGAAGGGGG
CGCTCAAGAAGAAGTCGATGAAGACGAAGAGCAACATGATTAAGAAAAAG
ATCAAGGCCTCTAAGTCTAGGAAGGAGCGGGTTGGTCGCGAAGACGGAGA
CGGGGAGGAGGACGACGGTGCCGGGAGGAGCAGCAGCCAAGGCGGTGGAG
GAGGGGGTGATGCTCGTCGGGTCGGACGAGAACTGACGGTGGTGGAACAG
GCATTGGCGTCTTTCAAGCGGAATCGGTCGCAGAAGTTGCCGGATAAACA
GGTGCAAGAAATGACCCAGCGATTGATTGATGTGATGGAGGTGGCGGCAA
AGGAAGACAGGCAGGCCATGATGCACAACAAGCCCGCGATACAGAAACTC
AAGAGTTTGACCGAGGTTCTGGATTTGTTGAAGAGCAAGCATCTACAGGG
TGCCTTGGTGGATAATGGGCAGGTGCTGGGCTTGATCAAGCAGTGGCTGC
AACCGCTGCCGGATAAGAGCTTGCCATTGTTCGCTGTGCGCACGCCGCTG
ATTGATTATCTGCTGACTGCACGGGTGGAGGTGCACCGGCTCAAGGAGAG
CGGAGTAGGCCGCGTCATCCAGCAGCTGAAAAAACACCCGGAGGAGACGG
TGGAGAACAAGGCGAAGCTTACGGAGATCGTCGATAATTGGTCCCGCCTT
ATCACGGGCAAGGGCACCACCTTGAAGAGCCGGACGAGCGAGGAGGAGAT
GGAGGGCCGGGAGGCACGGCAGGCCCAGCAGGCCAAGGCAAACGCAGGAG
GAGGGGGCTTTATCATGTCGACGACGGCGCGGGGGGTGGTGATCCCGATC
CGGACGGGCTTCAACTTCAAGAAGGTGGCCTTGACATTTCGGGAGGAATT
TGATAGGGGGCAGGGGAAGGAGGACGAGGCTATGGAGGTGAACGAGCGGG
AGCCTGGTAGGGAAGGGGGGGCAGAGAGTCGGACCAGCCGGGTACGAAAG
GCTTTGAAGGACATGGGGAGGGGGGGGTAGCAAAAAGTTGAGGCATGAGA
GCGTGCGGCATGGCCATTAGAGAGA

Coding sequence (CDS) from alignment at scaffold_3:320397..322071-

>mRNA_120 ID=mRNA_120|Name=jgi.p|Nanoce1779_2|576289|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_3:320397..322071- (Nannochloropsis oceanica)
ATGGCAGCCAATCAAGACTATAACAACCTGTTTGGGAGCTCCGACGAGGA
GAGCAGTGGTGAGGAAGAGGCTGAAGAGGTGGAGCAGCAGCGACAGAAGC
CCGCGACAAACTCAGCGCCCGCTCAAGCGGCTGCCTCTTCCGCCGCGGCT
GCAGGCGGGGACGCCAGCAGTAGCAGTGAAGACGAGAGCAGTGACGACGA
GGACGAACGTCTCTCGGCCAAGAAGCGTTTACAGAAAAAAGGCGTGCCCT
TAGCATCTTTGTCGTCGGACGAAAGCGAGAGCGAGGATGAGGAAGCAGCA
GCAGCAGCAACCGCTTCCCGGCCTCCCCCCAAGGCCCGCACCACAGGCAA
CGATGCCTTGAAGCGAGCCACGGCTGACTTTGACGACGAGGAAGAGGAAG
AAGAGGACCACGCGCGTAAATCCCAGACACTCCCAGATTTGAGCAGCGAT
GGGAGCAGTAGCAGCAGCAGTAGTAGTGGGGAGAGTGACTCGTCGGATGA
TGAGGGGGACTCACGCCGACGGAAGAAGGGGGCGCTCAAGAAGAAGTCGA
TGAAGACGAAGAGCAACATGATTAAGAAAAAGATCAAGGCCTCTAAGTCT
AGGAAGGAGCGGGTTGGTCGCGAAGACGGAGACGGGGAGGAGGACGACGG
TGCCGGGAGGAGCAGCAGCCAAGGCGGTGGAGGAGGGGGTGATGCTCGTC
GGGTCGGACGAGAACTGACGGTGGTGGAACAGGCATTGGCGTCTTTCAAG
CGGAATCGGTCGCAGAAGTTGCCGGATAAACAGGTGCAAGAAATGACCCA
GCGATTGATTGATGTGATGGAGGTGGCGGCAAAGGAAGACAGGCAGGCCA
TGATGCACAACAAGCCCGCGATACAGAAACTCAAGAGTTTGACCGAGGTT
CTGGATTTGTTGAAGAGCAAGCATCTACAGGGTGCCTTGGTGGATAATGG
GCAGGTGCTGGGCTTGATCAAGCAGTGGCTGCAACCGCTGCCGGATAAGA
GCTTGCCATTGTTCGCTGTGCGCACGCCGCTGATTGATTATCTGCTGACT
GCACGGGTGGAGGTGCACCGGCTCAAGGAGAGCGGAGTAGGCCGCGTCAT
CCAGCAGCTGAAAAAACACCCGGAGGAGACGGTGGAGAACAAGGCGAAGC
TTACGGAGATCGTCGATAATTGGTCCCGCCTTATCACGGGCAAGGGCACC
ACCTTGAAGAGCCGGACGAGCGAGGAGGAGATGGAGGGCCGGGAGGCACG
GCAGGCCCAGCAGGCCAAGGCAAACGCAGGAGGAGGGGGCTTTATCATGT
CGACGACGGCGCGGGGGGTGGTGATCCCGATCCGGACGGGCTTCAACTTC
AAGAAGGTGGCCTTGACATTTCGGGAGGAATTTGATAGGGGGCAGGGGAA
GGAGGACGAGGCTATGGAGGTGAACGAGCGGGAGCCTGGTAGGGAAGGGG
GGGCAGAGAGTCGGACCAGCCGGGTACGAAAGGCTTTGAAGGACATGGGG
AGGGGGGGGTAG

Synonyms

Publications