jgi.p|Nanoce1779_2|575857, mRNA_12 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575857
Unique Name	mRNA_12
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1966
Alignment location	scaffold_3:35576..38308 +

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Properties


Property Name	Value
TranscriptId	575943
Track	FilteredModels2
ProteinId	575857

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:35576..38308 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575857	gene_12	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575857	mRNA_12-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12	CDS_12	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:35576..38308+
coding sequence from alignment at scaffold_3:35576..38308+

mRNA sequence

>mRNA_12 ID=mRNA_12|Name=jgi.p|Nanoce1779_2|575857|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp
ACAGCCATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCAC
CACCATGGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTC
TGGTCCACGCTGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTCACA
CTTAGCAGGACGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTATCCA
TATGGACCGGATCACGGATTGGGGCAATGCTACCGTTGTATACCCTGGGG
TCATTCTTCCAATGGGAGGTCACGATCATGAGGACGAACACCAGCACGAG
GACGAACATGGCCACGAAGAAGGCCCGGCCGCCTTCCGCAGTGGCAATAT
CAGGCCCCGCATCTGGAAAAATTCTATTTCTAACAAGCCCCAGCTTGAGC
ATGAAGAACACATGGTCTATTATACCATCCCCAAGTCGTATGCCTCCTCT
TTACCAGGACCCGGGAAGCGAATATTATGTCCTTCAAGGATTTGGGATGA
CTGCCGCTGTACCTTTTCTCCTTCCCTCCCTCGGGTTTCTCCCTCTTGCC
CGCCTTGGACCCTGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCAT
AGTTTCAAGATGTCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCT
TGAGTTCGATGTAGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTT
GCTGGGAGCCGGATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGG
AGGGAGGGCGTACATTGTGCGATTAATTGATGTACAGGTTTGTCCAAATT
CCGAACAATCTGAGGGATCCGTTGATTAATTTTTCCGTTCCATGAAGTTG
GCATGTCCAAGGTAAGTATACTGAAAGAGGGGAAGAGGAGAGCTTGTTGG
ATGAAGAATCTGCGTCTTGGCTAGGCCCGATTGGGGTATTGCTCTTGGTA
CGAATATGTGAGAGTAATTAACAAGACGGAGTGAGTGGTGATTTGAGAAG
GGAAGGGCTTAAGTTCAGGAGGGATAAACATGCACAAGGAAAGCGTAAAA
GGAAAACGTGCATCGGCGAAGCTCAGCGCCGAGGATACGTGAAACAGCAA
CTTTCGTGGGACTATAGATTTACATTAAGCATCACGCTGATCCTTTGAGC
ATGATGGTAAATGGGTCAGAGAGGAAGCAGGCGAAGACATTGAAATTCCT
ATGCCTCATATCTCTCATTTCCTTCCATTCCTTCACAGATTGACCTCTTC
GGTAAAATTGGTGTCGACAGGCACGATCATTAGCTTACGTAGCCCCCAAA
GCTTGCTCCGGGGCAATAAACTTCGCTAGTGTGTCGGGGGCGTTTTTTCC
CTTTGTTTATGATCGAGGATTTTAAAAGATGGAAAATAAAAGGTTACGAT
TGGGGAGGCCACAGGTGGCGGCTGCTTCCCTGAGCTAGTCACAAGCAAGA
GTTTCTTAATGTTGGTAAACCTTTCGCGGGCCAAAAATGTAATGCCTTAG
AAATGTGTCGATTTGAGTGTTGAGTGAGGACTATCGGTCTTTGCGTACGA
CTAAGGGATGGGAGTGTGGAGGCGTTTCTGTTTCTGTCCCAAGGGCCTTC
TCTCGAGGCTTCGCGCACAAAATGACCCATGAGCGTGATAGACGAAAAAT
CCGCCAATGTCTATACATGTCGCGTACACAGTCACAGTACATTTATATTT
CTTGTTCGCGTTTATGAAGCTTAAATTCTAATGAGATCACACGTCGGACG
ACTACCGGCATCATCTAGTCAATCGTCAGTCATCTTTGGCCCTTCGATTA
TGCATGACAAGTATAATTGTCGTCGTAGTCGTCCTTTTTACTTTTTTGGG
GTTTTATCACCATTACGAGCCTTGCCACCGACATGATGGCATCTACTTCT
ACCATAATGTGAGCACCAAACTAAGCCCATCCCGTATGACGGGGTAGCTG
CCGGCATCAGCCCCAC

protein sequence of jgi.p|Nanoce1779_2|575857

>mRNA_12-protein ID=mRNA_12-protein|Name=jgi.p|Nanoce1779_2|575857|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MLASSSSKLAGKFITTMALLQYLLVLVSLACLVHADCPPDGAITATVTLS
RTRVRRGKVFHITIHMDRITDWGNATVVYPGVILPMGGHDHEDEHQHEDE
HGHEEGPAAFRSGNIRPRIWKNSISNKPQLEHEEHMVYYTIPKSYASSLP
GPGKRILCPSRIWDDCRCTFSPSLPRVSPSCPPWTLGPKTKRTGAARHSF
KMSILVRKYAEDEELEFDVGVWDGIGHEKTLCWEPDDHVHVRRGKEGGRE
GVHCAIN*

mRNA from alignment at scaffold_3:35576..38308+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12 ID=mRNA_12|Name=jgi.p|Nanoce1779_2|575857|organism=Nannochloropsis oceanica|type=mRNA|length=2733bp|location=Sequence derived from alignment at scaffold_3:35576..38308+ (Nannochloropsis oceanica)
ACAGCCATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCAC
CACCATGGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTC
TGGTACGTAATTACCAGGCTTCTTTTGTCGTATTTGTCTTTTATTCCAAA
CACAACCATACACTGTCTTCAATTGTTGCCGCCTTCGGCAAATCCCTCTA
TCCTTAGTCCTTATCTGGAGTCTATGGCCTCCAAGGGATCCATCACATGT
TATTCTATGGGGAAAATTATGAGAACTCTTAAACATGTAAATATCCCCTC
CCATCCTCCCTCCTTCCTTCCCTTCCACTTGTAGGTCCACGCTGACTGCC
CTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGCAGGACGCGAGTA
AGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGACCGGATCACGGA
TTGGGGCAATGCTACCGTTGTATACCCTGGGGTAGGTGAAGTGTGAAGGA
AGATGGTAGCAAGGGAGGGGGTGACAGGAGTGCTTTGGGAAGAGGCAGGT
AGACATGCTTAAGGGATACAGATAGGAGGTGGGATGCACATATGCATGTG
AGCCCGACAGTGGAAGACGTCCTGACCACCCTCCTGGTCATATTCTCCCA
CATTACCTTTCCCTTTTTCTTCCCGAACCCTTTTTTCCACCACCTATCAC
TCCTCCTGCCCTAAACTCGTATTTTTCTTATTTACTGCCTCCTCGTTCAC
CACGCAGGTCATTCTTCCAATGGGAGGTCACGATCATGAGGACGAACACC
AGCACGAGGACGAACATGGCCACGAAGAAGGCCCGGCCGCCTTCCGCAGT
GGCAATATCAGGCCCCGCATCTGGAAAAATTCTATTTCTAACAAGCCCCA
GCTTGAGCATGAAGAACACATGGTCTATTATACCATCCCCAAGTCGTATG
CCTCCTCTTTACCAGGACCCGGGTAAGCGCTTTTATCCTTTCCTCCCTCT
CCCCTTCCCTCCTTCCCTGCATCATTCCCCTTTCCCAGCGAATATTTCGG
AATCTTCCTTGATCAACCTTACTTGTTTTCGGTAGGAAGCGAATATTATG
TCCTTCAAGGATTTGGGATGACTGCCGCTGTACCTTTTCTCCTTCCCTCC
CTCGGGTTTCTCCCTCTTGCCCGCCTTGGTCCGTCATCCTTCCCTCCCAA
TTATTCATACGCTTGGAGAAGTTCTGTACCAGTGCCCAAGACCTAAAAAG
TGGACAAGCTCTCCCCGTGTCCTTAGTTCCTCCTCTCTTTCCCCATCATT
CATTCCAAATTTCTCTCTTTTTAGGACCCTGGGGCCCAAAACCAAAAGGA
CAGGGGCGGCAAGGCATAGTTTCAAGATGTCTATCTTAGTGAGAAAGTAC
GCGGAAGACGAGGAGCTTGAGTTCGATGTAGGCGTGTGGGATGGCATCGG
CCATGAAAAGACACTTTGCTGGGAGCCGGATGATCATGTGCATGTAAGGA
GAGGGAAAGAAGGAGGGAGGGAGGGCGTACATTGTGCGATTAATTGATGT
ACAGGTTTGTCCAAATTCCGAACAATCTGAGGGATCCGTTGATTAATTTT
TCCGTTCCATGAAGTTGGCATGTCCAAGGTAAGTATACTGAAAGAGGGGA
AGAGGAGAGCTTGTTGGATGAAGAATCTGCGTCTTGGCTAGGCCCGATTG
GGGTATTGCTCTTGGTACGAATATGTGAGAGTAATTAACAAGACGGAGTG
AGTGGTGATTTGAGAAGGGAAGGGCTTAAGTTCAGGAGGGATAAACATGC
ACAAGGAAAGCGTAAAAGGAAAACGTGCATCGGCGAAGCTCAGCGCCGAG
GATACGTGAAACAGCAACTTTCGTGGGACTATAGATTTACATTAAGCATC
ACGCTGATCCTTTGAGCATGATGGTAAATGGGTCAGAGAGGAAGCAGGCG
AAGACATTGAAATTCCTATGCCTCATATCTCTCATTTCCTTCCATTCCTT
CACAGATTGACCTCTTCGGTAAAATTGGTGTCGACAGGCACGATCATTAG
CTTACGTAGCCCCCAAAGCTTGCTCCGGGGCAATAAACTTCGCTAGTGTG
TCGGGGGCGTTTTTTCCCTTTGTTTATGATCGAGGATTTTAAAAGATGGA
AAATAAAAGGTTACGATTGGGGAGGCCACAGGTGGCGGCTGCTTCCCTGA
GCTAGTCACAAGCAAGAGTTTCTTAATGTTGGTAAACCTTTCGCGGGCCA
AAAATGTAATGCCTTAGAAATGTGTCGATTTGAGTGTTGAGTGAGGACTA
TCGGTCTTTGCGTACGACTAAGGGATGGGAGTGTGGAGGCGTTTCTGTTT
CTGTCCCAAGGGCCTTCTCTCGAGGCTTCGCGCACAAAATGACCCATGAG
CGTGATAGACGAAAAATCCGCCAATGTCTATACATGTCGCGTACACAGTC
ACAGTACATTTATATTTCTTGTTCGCGTTTATGAAGCTTAAATTCTAATG
AGATCACACGTCGGACGACTACCGGCATCATCTAGTCAATCGTCAGTCAT
CTTTGGCCCTTCGATTATGCATGACAAGTATAATTGTCGTCGTAGTCGTC
CTTTTTACTTTTTTGGGGTTTTATCACCATTACGAGCCTTGCCACCGACA
TGATGGCATCTACTTCTACCATAATGTGAGCACCAAACTAAGCCCATCCC
GTATGACGGGGTAGCTGCCGGCATCAGCCCCAC

Coding sequence (CDS) from alignment at scaffold_3:35576..38308+

>mRNA_12 ID=mRNA_12|Name=jgi.p|Nanoce1779_2|575857|organism=Nannochloropsis oceanica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_3:35576..38308+ (Nannochloropsis oceanica)
ATGCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCACCACCAT
GGCACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTCTGGTCC
ACGCTGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGC
AGGACGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGA
CCGGATCACGGATTGGGGCAATGCTACCGTTGTATACCCTGGGGTCATTC
TTCCAATGGGAGGTCACGATCATGAGGACGAACACCAGCACGAGGACGAA
CATGGCCACGAAGAAGGCCCGGCCGCCTTCCGCAGTGGCAATATCAGGCC
CCGCATCTGGAAAAATTCTATTTCTAACAAGCCCCAGCTTGAGCATGAAG
AACACATGGTCTATTATACCATCCCCAAGTCGTATGCCTCCTCTTTACCA
GGACCCGGGAAGCGAATATTATGTCCTTCAAGGATTTGGGATGACTGCCG
CTGTACCTTTTCTCCTTCCCTCCCTCGGGTTTCTCCCTCTTGCCCGCCTT
GGACCCTGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCATAGTTTC
AAGATGTCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTT
CGATGTAGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTTGCTGGG
AGCCGGATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAG
GGCGTACATTGTGCGATTAATTGAATGCTTGCCTCGTCCTCTTCCAAGCT
GGCTGGGAAGTTCATCACCACCATGGCACTGCTGCAATACCTTCTCGTCC
TGGTCTCCTTGGCTTGTCTGGTCCACGCTGACTGCCCTCCCGACGGCGCC
ATTACGGCCACGGTCACACTTAGCAGGACGCGAGTAAGGCGAGGAAAAGT
CTTCCATATCACTATCCATATGGACCGGATCACGGATTGGGGCAATGCTA
CCGTTGTATACCCTGGGGTCATTCTTCCAATGGGAGGTCACGATCATGAG
GACGAACACCAGCACGAGGACGAACATGGCCACGAAGAAGGCCCGGCCGC
CTTCCGCAGTGGCAATATCAGGCCCCGCATCTGGAAAAATTCTATTTCTA
ACAAGCCCCAGCTTGAGCATGAAGAACACATGGTCTATTATACCATCCCC
AAGTCGTATGCCTCCTCTTTACCAGGACCCGGGAAGCGAATATTATGTCC
TTCAAGGATTTGGGATGACTGCCGCTGTACCTTTTCTCCTTCCCTCCCTC
GGGTTTCTCCCTCTTGCCCGCCTTGGACCCTGGGGCCCAAAACCAAAAGG
ACAGGGGCGGCAAGGCATAGTTTCAAGATGTCTATCTTAGTGAGAAAGTA
CGCGGAAGACGAGGAGCTTGAGTTCGATGTAGGCGTGTGGGATGGCATCG
GCCATGAAAAGACACTTTGCTGGGAGCCGGATGATCATGTGCATGTAAGG
AGAGGGAAAGAAGGAGGGAGGGAGGGCGTACATTGTGCGATTAATTGAAT
GCTTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCACCACCATGG
CACTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTCTGGTCCAC
GCTGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGCAG
GACGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGACC
GGATCACGGATTGGGGCAATGCTACCGTTGTATACCCTGGGGTCATTCTT
CCAATGGGAGGTCACGATCATGAGGACGAACACCAGCACGAGGACGAACA
TGGCCACGAAGAAGGCCCGGCCGCCTTCCGCAGTGGCAATATCAGGCCCC
GCATCTGGAAAAATTCTATTTCTAACAAGCCCCAGCTTGAGCATGAAGAA
CACATGGTCTATTATACCATCCCCAAGTCGTATGCCTCCTCTTTACCAGG
ACCCGGGAAGCGAATATTATGTCCTTCAAGGATTTGGGATGACTGCCGCT
GTACCTTTTCTCCTTCCCTCCCTCGGGTTTCTCCCTCTTGCCCGCCTTGG
ACCCTGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCATAGTTTCAA
GATGTCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTTCG
ATGTAGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTTGCTGGGAG
CCGGATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAGGG
CGTACATTGTGCGATTAATTGAATGCTTGCCTCGTCCTCTTCCAAGCTGG
CTGGGAAGTTCATCACCACCATGGCACTGCTGCAATACCTTCTCGTCCTG
GTCTCCTTGGCTTGTCTGGTCCACGCTGACTGCCCTCCCGACGGCGCCAT
TACGGCCACGGTCACACTTAGCAGGACGCGAGTAAGGCGAGGAAAAGTCT
TCCATATCACTATCCATATGGACCGGATCACGGATTGGGGCAATGCTACC
GTTGTATACCCTGGGGTCATTCTTCCAATGGGAGGTCACGATCATGAGGA
CGAACACCAGCACGAGGACGAACATGGCCACGAAGAAGGCCCGGCCGCCT
TCCGCAGTGGCAATATCAGGCCCCGCATCTGGAAAAATTCTATTTCTAAC
AAGCCCCAGCTTGAGCATGAAGAACACATGGTCTATTATACCATCCCCAA
GTCGTATGCCTCCTCTTTACCAGGACCCGGGAAGCGAATATTATGTCCTT
CAAGGATTTGGGATGACTGCCGCTGTACCTTTTCTCCTTCCCTCCCTCGG
GTTTCTCCCTCTTGCCCGCCTTGGACCCTGGGGCCCAAAACCAAAAGGAC
AGGGGCGGCAAGGCATAGTTTCAAGATGTCTATCTTAGTGAGAAAGTACG
CGGAAGACGAGGAGCTTGAGTTCGATGTAGGCGTGTGGGATGGCATCGGC
CATGAAAAGACACTTTGCTGGGAGCCGGATGATCATGTGCATGTAAGGAG
AGGGAAAGAAGGAGGGAGGGAGGGCGTACATTGTGCGATTAATTGAATGC
TTGCCTCGTCCTCTTCCAAGCTGGCTGGGAAGTTCATCACCACCATGGCA
CTGCTGCAATACCTTCTCGTCCTGGTCTCCTTGGCTTGTCTGGTCCACGC
TGACTGCCCTCCCGACGGCGCCATTACGGCCACGGTCACACTTAGCAGGA
CGCGAGTAAGGCGAGGAAAAGTCTTCCATATCACTATCCATATGGACCGG
ATCACGGATTGGGGCAATGCTACCGTTGTATACCCTGGGGTCATTCTTCC
AATGGGAGGTCACGATCATGAGGACGAACACCAGCACGAGGACGAACATG
GCCACGAAGAAGGCCCGGCCGCCTTCCGCAGTGGCAATATCAGGCCCCGC
ATCTGGAAAAATTCTATTTCTAACAAGCCCCAGCTTGAGCATGAAGAACA
CATGGTCTATTATACCATCCCCAAGTCGTATGCCTCCTCTTTACCAGGAC
CCGGGAAGCGAATATTATGTCCTTCAAGGATTTGGGATGACTGCCGCTGT
ACCTTTTCTCCTTCCCTCCCTCGGGTTTCTCCCTCTTGCCCGCCTTGGAC
CCTGGGGCCCAAAACCAAAAGGACAGGGGCGGCAAGGCATAGTTTCAAGA
TGTCTATCTTAGTGAGAAAGTACGCGGAAGACGAGGAGCTTGAGTTCGAT
GTAGGCGTGTGGGATGGCATCGGCCATGAAAAGACACTTTGCTGGGAGCC
GGATGATCATGTGCATGTAAGGAGAGGGAAAGAAGGAGGGAGGGAGGGCG
TACATTGTGCGATTAATTGA

Synonyms

Publications