jgi.p|Nanoce1779_2|668114, mRNA_1198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668114
Unique NamemRNA_1198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1544
Alignment locationscaffold_2:1478292..1480171 -

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Properties
Property NameValue
TranscriptId668200
TrackFilteredModels2
ProteinId668114
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1478292..1480171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668114gene_1198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668114mRNA_1198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1198CDS_1198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1198 ID=mRNA_1198|Name=jgi.p|Nanoce1779_2|668114|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
AGATCCACTACGACGCCGTGTATCCCCGTCTTCCACTTCTCACCTACCCC
ATTGTGTTACCCTCCGAAATGGAACACCACCTCTCTGCCGCCGAGCTCCC
TGTCCTGGACCGCGAGGAAGTAAACATGAGCGACCTGGACGAGGACGAGG
AGCAACTTCCCCACTTGGTCCATGCACCTTTCTTGGGCCTGCGCGGACTG
GGTCTGTCCCCACTCTATCACCACCGGCATGCCCAACTTTCGCACGGGGG
CCACCCGAGCCCGCACGACCCTAACAAACGGCACACATGGACGACGGAGG
AGGACCGCCGCTTGAAGGAGCTGGTGCACACAGTGGGCCCTAAGAAGTGG
GGCATCATTTCGACGCATTTCAATAACCGCAACGCCAAGCAGTGCCACCA
GCGCTGGCATTACGTGCTCAAGCCCTGCATCACCCGCGAGCCATGGACGG
AGGAGGAGGACCAAGCAATCATGCAGTACCAGATTCAAATCGGCAATAAA
TGGTCTCATATCGCCAAATACCTCTCGGGCCGCACGGGCTATGCCATCCG
CAACCGCTACAACTTCTTGCAGAAGCGACTGCTCGAGGAGAATCAGCGCC
ACTTCCGTCCTTTTCTCGGCCCGCCCGTAGCCTTGCACATGTACGCGGCA
GCAGCAGCGGCAACAGCAGTGGCGTCTGGAGAGAAAGAGAGACCGGGAAG
GCAAGGGAGAGATATAGCGGTGCAGCAGAATGAGGGGAGGCGGCGGGGGC
GGGACGAGGAGATGGAGGACGAGGAGGACGGAGTACCCATGATGGAGGAG
GAGGAAGAGGAGGACGACGACGAAGAAGAGGAGGAAGAAGAAAACGTAGG
AGTGGCTAAGGACGATCGCGCGCACCCGCCCACGCTGTTGGATCCTTTGC
CGGTGCCTGCAGGCTGGTCACCCGCTATGGCGGCCACCTCGTCCCAATTA
ACTTCTTCCGCTCCCTCCTTCCCCTTCTCCTCCACTTCCATCGCCCCGCA
GCAGCTAACAATGCCTCCATGCATTCCCACATCCTCCCCCGCTCCAGACA
CTACCAACTCCACGTCAAGCAGCGTCGCCATGTCCTCCGATCCCGCTCTC
ATCGTGCACGCCTCTGTCTCTGCGCAAGCGCCCTCCTTCATCTCCACCTC
CAACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCTTCACGGCACGT
GCAAGGCGGGCCCGGCGGCGGCTGCTGGCTTTTCCTCCTCCCTGTCCTCG
GTACAGTCAGGAAAAGGAGTTGGGGGAGGAGGGGCTGATTTTCACGAGCA
GCAGTACCACGAGCAGCAGAAGAATGGCTCGCACTCATCGTTTGAGAATG
CTGTCTTTGCCAATTTGGAGCTGATGGCGACGGCGGCAGGGCAACAGCAG
CAGGTGCCAGTCCCCACCCCGGCACCGACGCCGAGAACGATCACGGGCGT
TAATATAAACACGATGACGCAGACCCGGGAGGGAAAGGGGGAGATGCGGA
TGGGGAAGACTGCGGAGGAAGGGCAGCAGCAGGGGGAGGTATAG
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protein sequence of jgi.p|Nanoce1779_2|668114

>mRNA_1198-protein ID=mRNA_1198-protein|Name=jgi.p|Nanoce1779_2|668114|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MEHHLSAAELPVLDREEVNMSDLDEDEEQLPHLVHAPFLGLRGLGLSPLY
HHRHAQLSHGGHPSPHDPNKRHTWTTEEDRRLKELVHTVGPKKWGIISTH
FNNRNAKQCHQRWHYVLKPCITREPWTEEEDQAIMQYQIQIGNKWSHIAK
YLSGRTGYAIRNRYNFLQKRLLEENQRHFRPFLGPPVALHMYAAAAAATA
VASGEKERPGRQGRDIAVQQNEGRRRGRDEEMEDEEDGVPMMEEEEEEDD
DEEEEEEENVGVAKDDRAHPPTLLDPLPVPAGWSPAMAATSSQLTSSAPS
FPFSSTSIAPQQLTMPPCIPTSSPAPDTTNSTSSSVAMSSDPALIVHASV
SAQAPSFISTSNPSSSSSSSSSALHGTCKAGPAAAAGFSSSLSSVQSGKG
VGGGGADFHEQQYHEQQKNGSHSSFENAVFANLELMATAAGQQQQVPVPT
PAPTPRTITGVNINTMTQTREGKGEMRMGKTAEEGQQQGEV*
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mRNA from alignment at scaffold_2:1478292..1480171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1198 ID=mRNA_1198|Name=jgi.p|Nanoce1779_2|668114|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp|location=Sequence derived from alignment at scaffold_2:1478292..1480171- (Nannochloropsis oceanica)
AGATCCACTACGACGCCGTGTATCCCCGTCTTCCACTTCTCACCTACCCC
ATTGTGTTACCCTCCGAAATGGAACACCACCTCTCTGCCGCCGAGCTCCC
TGTCCTGGACCGCGAGGAAGTAAACATGAGCGACCTGGACGAGGACGAGG
AGGTACACAACCAAATTACCACTTCAAAACCCTACAACACCACAAATCAA
GGTCCCGCGTCGATAACGCCGAACTTGGCACCACTTCCCGCCAAAGCCCA
GCCCCCGGTTTACCTGCAACAGCAGGCAGAGCCTTTCATCCGTCCGCGTC
TTGAACAGCAGCAGGCAGCCATGCCCATGAACCTGCCCCCCCCCCCTCCA
CACCATCTGGAATGGTTCCACCACGCCCATGCCCAAGCCGCCGCCGCTGC
CTCTGCCGCGACTGGCCACTACCCACTAGGCCCTCCTCCTCCTCCTCTTC
CTCCCTCTTCAGCGCAACCTCACCAACAACCATCACAGCAACTTCCCCAC
TTGGTCCATGCACCTTTCTTGGGCCTGCGCGGACTGGGTCTGTCCCCACT
CTATCACCACCGGCATGCCCAACTTTCGCACGGGGGCCACCCGAGCCCGC
ACGACCCTAACAAACGGCACACATGGACGACGGAGGAGGACCGCCGCTTG
AAGGAGCTGGTGCACACAGTGGGCCCTAAGAAGTGGGGCATCATTTCGAC
GCATTTCAATAACCGCAACGCCAAGCAGTGCCACCAGCGCTGGCATTACG
TGCTCAAGCCCTGCATCACCCGCGAGCCATGGACGGAGGAGGAGGACCAA
GCAATCATGCAGTACCAGATTCAAATCGGCAATAAATGGTCTCATATCGC
CAAATACCTCTCGGGCCGCACGGGCTATGCCATCCGCAACCGCTACAACT
TCTTGCAGAAGCGACTGCTCGAGGAGAATCAGCGCCACTTCCGTCCTTTT
CTCGGCCCGCCCGTAGCCTTGCACATGTACGCGGCAGCAGCAGCGGCAAC
AGCAGTGGCGTCTGGAGAGAAAGAGAGACCGGGAAGGCAAGGGAGAGATA
TAGCGGTGCAGCAGAATGAGGGGAGGCGGCGGGGGCGGGACGAGGAGATG
GAGGACGAGGAGGACGGAGTACCCATGATGGAGGAGGAGGAAGAGGAGGA
CGACGACGAAGAAGAGGAGGAAGAAGAAAACGTAGGAGTGGCTAAGGACG
ATCGCGCGCACCCGCCCACGCTGTTGGATCCTTTGCCGGTGCCTGCAGGC
TGGTCACCCGCTATGGCGGCCACCTCGTCCCAATTAACTTCTTCCGCTCC
CTCCTTCCCCTTCTCCTCCACTTCCATCGCCCCGCAGCAGCTAACAATGC
CTCCATGCATTCCCACATCCTCCCCCGCTCCAGACACTACCAACTCCACG
TCAAGCAGCGTCGCCATGTCCTCCGATCCCGCTCTCATCGTGCACGCCTC
TGTCTCTGCGCAAGCGCCCTCCTTCATCTCCACCTCCAACCCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCGCCCTTCACGGCACGTGCAAGGCGGGCCCG
GCGGCGGCTGCTGGCTTTTCCTCCTCCCTGTCCTCGGTACAGTCAGGAAA
AGGAGTTGGGGGAGGAGGGGCTGATTTTCACGAGCAGCAGTACCACGAGC
AGCAGAAGAATGGCTCGCACTCATCGTTTGAGAATGCTGTCTTTGCCAAT
TTGGAGCTGATGGCGACGGCGGCAGGGCAACAGCAGCAGGTGCCAGTCCC
CACCCCGGCACCGACGCCGAGAACGATCACGGGCGTTAATATAAACACGA
TGACGCAGACCCGGGAGGGAAAGGGGGAGATGCGGATGGGGAAGACTGCG
GAGGAAGGGCAGCAGCAGGGGGAGGTATAG
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Coding sequence (CDS) from alignment at scaffold_2:1478292..1480171-

>mRNA_1198 ID=mRNA_1198|Name=jgi.p|Nanoce1779_2|668114|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_2:1478292..1480171- (Nannochloropsis oceanica)
CAACTTCCCCACTTGGTCCATGCACCTTTCTTGGGCCTGCGCGGACTGGG
TCTGTCCCCACTCTATCACCACCGGCATGCCCAACTTTCGCACGGGGGCC
ACCCGAGCCCGCACGACCCTAACAAACGGCACACATGGACGACGGAGGAG
GACCGCCGCTTGAAGGAGCTGGTGCACACAGTGGGCCCTAAGAAGTGGGG
CATCATTTCGACGCATTTCAATAACCGCAACGCCAAGCAGTGCCACCAGC
GCTGGCATTACGTGCTCAAGCCCTGCATCACCCGCGAGCCATGGACGGAG
GAGGAGGACCAAGCAATCATGCAGTACCAGATTCAAATCGGCAATAAATG
GTCTCATATCGCCAAATACCTCTCGGGCCGCACGGGCTATGCCATCCGCA
ACCGCTACAACTTCTTGCAGAAGCGACTGCTCGAGGAGAATCAGCGCCAC
TTCCGTCCTTTTCTCGGCCCGCCCGTAGCCTTGCACATGTACGCGGCAGC
AGCAGCGGCAACAGCAGTGGCGTCTGGAGAGAAAGAGAGACCGGGAAGGC
AAGGGAGAGATATAGCGGTGCAGCAGAATGAGGGGAGGCGGCGGGGGCGG
GACGAGGAGATGGAGGACGAGGAGGACGGAGTACCCATGATGGAGGAGGA
GGAAGAGGAGGACGACGACGAAGAAGAGGAGGAAGAAGAAAACGTAGGAG
TGGCTAAGGACGATCGCGCGCACCCGCCCACGCTGTTGGATCCTTTGCCG
GTGCCTGCAGGCTGGTCACCCGCTATGGCGGCCACCTCGTCCCAATTAAC
TTCTTCCGCTCCCTCCTTCCCCTTCTCCTCCACTTCCATCGCCCCGCAGC
AGCTAACAATGCCTCCATGCATTCCCACATCCTCCCCCGCTCCAGACACT
ACCAACTCCACGTCAAGCAGCGTCGCCATGTCCTCCGATCCCGCTCTCAT
CGTGCACGCCTCTGTCTCTGCGCAAGCGCCCTCCTTCATCTCCACCTCCA
ACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCTTCACGGCACGTGC
AAGGCGGGCCCGGCGGCGGCTGCTGGCTTTTCCTCCTCCCTGTCCTCGGT
ACAGTCAGGAAAAGGAGTTGGGGGAGGAGGGGCTGATTTTCACGAGCAGC
AGTACCACGAGCAGCAGAAGAATGGCTCGCACTCATCGTTTGAGAATGCT
GTCTTTGCCAATTTGGAGCTGATGGCGACGGCGGCAGGGCAACAGCAGCA
GGTGCCAGTCCCCACCCCGGCACCGACGCCGAGAACGATCACGGGCGTTA
ATATAAACACGATGACGCAGACCCGGGAGGGAAAGGGGGAGATGCGGATG
GGGAAGACTGCGGAGGAAGGGCAGCAGCAGGGGGAGGTATAGATGGAACA
CCACCTCTCTGCCGCCGAGCTCCCTGTCCTGGACCGCGAGGAAGTAAACA
TGAGCGACCTGGACGAGGACGAGGAGCAACTTCCCCACTTGGTCCATGCA
CCTTTCTTGGGCCTGCGCGGACTGGGTCTGTCCCCACTCTATCACCACCG
GCATGCCCAACTTTCGCACGGGGGCCACCCGAGCCCGCACGACCCTAACA
AACGGCACACATGGACGACGGAGGAGGACCGCCGCTTGAAGGAGCTGGTG
CACACAGTGGGCCCTAAGAAGTGGGGCATCATTTCGACGCATTTCAATAA
CCGCAACGCCAAGCAGTGCCACCAGCGCTGGCATTACGTGCTCAAGCCCT
GCATCACCCGCGAGCCATGGACGGAGGAGGAGGACCAAGCAATCATGCAG
TACCAGATTCAAATCGGCAATAAATGGTCTCATATCGCCAAATACCTCTC
GGGCCGCACGGGCTATGCCATCCGCAACCGCTACAACTTCTTGCAGAAGC
GACTGCTCGAGGAGAATCAGCGCCACTTCCGTCCTTTTCTCGGCCCGCCC
GTAGCCTTGCACATGTACGCGGCAGCAGCAGCGGCAACAGCAGTGGCGTC
TGGAGAGAAAGAGAGACCGGGAAGGCAAGGGAGAGATATAGCGGTGCAGC
AGAATGAGGGGAGGCGGCGGGGGCGGGACGAGGAGATGGAGGACGAGGAG
GACGGAGTACCCATGATGGAGGAGGAGGAAGAGGAGGACGACGACGAAGA
AGAGGAGGAAGAAGAAAACGTAGGAGTGGCTAAGGACGATCGCGCGCACC
CGCCCACGCTGTTGGATCCTTTGCCGGTGCCTGCAGGCTGGTCACCCGCT
ATGGCGGCCACCTCGTCCCAATTAACTTCTTCCGCTCCCTCCTTCCCCTT
CTCCTCCACTTCCATCGCCCCGCAGCAGCTAACAATGCCTCCATGCATTC
CCACATCCTCCCCCGCTCCAGACACTACCAACTCCACGTCAAGCAGCGTC
GCCATGTCCTCCGATCCCGCTCTCATCGTGCACGCCTCTGTCTCTGCGCA
AGCGCCCTCCTTCATCTCCACCTCCAACCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCGCCCTTCACGGCACGTGCAAGGCGGGCCCGGCGGCGGCTGCT
GGCTTTTCCTCCTCCCTGTCCTCGGTACAGTCAGGAAAAGGAGTTGGGGG
AGGAGGGGCTGATTTTCACGAGCAGCAGTACCACGAGCAGCAGAAGAATG
GCTCGCACTCATCGTTTGAGAATGCTGTCTTTGCCAATTTGGAGCTGATG
GCGACGGCGGCAGGGCAACAGCAGCAGGTGCCAGTCCCCACCCCGGCACC
GACGCCGAGAACGATCACGGGCGTTAATATAAACACGATGACGCAGACCC
GGGAGGGAAAGGGGGAGATGCGGATGGGGAAGACTGCGGAGGAAGGGCAG
CAGCAGGGGGAGGTATAGATGGAACACCACCTCTCTGCCGCCGAGCTCCC
TGTCCTGGACCGCGAGGAAGTAAACATGAGCGACCTGGACGAGGACGAGG
AG
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Synonyms
Publications