jgi.p|Nanoce1779_2|575679, mRNA_1193 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575679
Unique NamemRNA_1193
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1138
Alignment locationscaffold_2:1459479..1460616 -

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Properties
Property NameValue
TranscriptId575765
TrackFilteredModels2
ProteinId575679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1459479..1460616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575679gene_1193Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575679mRNA_1193-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1193CDS_1193Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1193 ID=mRNA_1193|Name=jgi.p|Nanoce1779_2|575679|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp
CGTTTCATTTGTTTACTTTTCGTGTTGGTGAGTGTTGTTCTGTCGGGGAC
AAGAGACGAGGTCTATTGAAGGAGGAGGAGGCAGAGGAGGAGGAGGAGGC
CTTAGAAAGGACTTTGTCGGTATCAATTGTCGTGGTTGACGGAGGGGAGG
AAGGCAAAGAATGTCATTTGACATACGCATGGCGTTTACCAGAAGCTCTC
TGTGGATGTCCGATGCATCTCTTGGGTATGCCCTTCCTTGTTTCCCTTTA
TTTCCTTTTTTATCTTCACTTCCTTCTATCGTCTTCTTTTTAATTCCTCT
TCTCTTCTTTCTCCTCCTTTGCCAGTTACTTTCCTGCTTTGACCCTCCTT
ATTATTCCGCCCTCTTTTTTCCCCTCCCTTCTCTTCTCTTTTCTTTGCCA
TCATATTCGATGTCCTCCTCGTGGGTGTTTATTCATTGTTTGACAAAAGA
GAATTCGTTTCGTGTGTGCGTTGCTTGTTTTGCTCTACGAGAAGGATTTG
TGTCGTGTGTGCGTTGCTTATTCATTGTTTTGTCAGGAGAGTTTGTTTCG
TGAACTGCATTGCTAATTAATTGGCTGATTAGGAGGATTTGTATTGTGAT
CTGCATTGCTTATCTTATGTCCGGGATTGGCCGGAGGGGTGGGGCTGTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGACGTGGTGGTAGTGGTAATGATGATACTTGTAGTATTTGTAGCGGTAG
TGGTTGGCCATCTCCTCCTTCGTCCCTTCCATAGAGAGCATGCTACTACG
CACTTGAGTGTGTTTACACGCACACACACACACACACACACACATATATA
TATATATACATATGCAGATGTGTCGAGGAGCTGGAGCTGTCTTCATGTCC
CCCTGCCTTGGCGTCTGCATGCGTCTCCGTCTCTTAACCCTCCTTTAAAC
CTGCTCTCCGTCTTCTTTTTCCAATCCCGGAATTTCTCCCATCACATAGA
TTCATTCATCTATCCCCTCTTTTTTCTCATCTCCCCCCTCCCCCCACTCC
TTCCATCCCCCTCCTCTTCTTCCCTCTTATTCTATTCCTCTATATACACA
CAAGCAACCTTCGCGCCTCTATCTCCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|575679

>mRNA_1193-protein ID=mRNA_1193-protein|Name=jgi.p|Nanoce1779_2|575679|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MSFDIRMAFTRSSLWMSDASLGYALPCFPLFPFLSSLPSIVFFLIPLLFF
LLLCQLLSCFDPPYYSALFFPLPSLLFSLPSYSMSSSWVFIHCLTKENSF
RVCVACFALREGFVSCVRCLFIVLSGEFVS*
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mRNA from alignment at scaffold_2:1459479..1460616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1193 ID=mRNA_1193|Name=jgi.p|Nanoce1779_2|575679|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp|location=Sequence derived from alignment at scaffold_2:1459479..1460616- (Nannochloropsis oceanica)
CGTTTCATTTGTTTACTTTTCGTGTTGGTGAGTGTTGTTCTGTCGGGGAC
AAGAGACGAGGTCTATTGAAGGAGGAGGAGGCAGAGGAGGAGGAGGAGGC
CTTAGAAAGGACTTTGTCGGTATCAATTGTCGTGGTTGACGGAGGGGAGG
AAGGCAAAGAATGTCATTTGACATACGCATGGCGTTTACCAGAAGCTCTC
TGTGGATGTCCGATGCATCTCTTGGGTATGCCCTTCCTTGTTTCCCTTTA
TTTCCTTTTTTATCTTCACTTCCTTCTATCGTCTTCTTTTTAATTCCTCT
TCTCTTCTTTCTCCTCCTTTGCCAGTTACTTTCCTGCTTTGACCCTCCTT
ATTATTCCGCCCTCTTTTTTCCCCTCCCTTCTCTTCTCTTTTCTTTGCCA
TCATATTCGATGTCCTCCTCGTGGGTGTTTATTCATTGTTTGACAAAAGA
GAATTCGTTTCGTGTGTGCGTTGCTTGTTTTGCTCTACGAGAAGGATTTG
TGTCGTGTGTGCGTTGCTTATTCATTGTTTTGTCAGGAGAGTTTGTTTCG
TGAACTGCATTGCTAATTAATTGGCTGATTAGGAGGATTTGTATTGTGAT
CTGCATTGCTTATCTTATGTCCGGGATTGGCCGGAGGGGTGGGGCTGTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGACGTGGTGGTAGTGGTAATGATGATACTTGTAGTATTTGTAGCGGTAG
TGGTTGGCCATCTCCTCCTTCGTCCCTTCCATAGAGAGCATGCTACTACG
CACTTGAGTGTGTTTACACGCACACACACACACACACACACACATATATA
TATATATACATATGCAGATGTGTCGAGGAGCTGGAGCTGTCTTCATGTCC
CCCTGCCTTGGCGTCTGCATGCGTCTCCGTCTCTTAACCCTCCTTTAAAC
CTGCTCTCCGTCTTCTTTTTCCAATCCCGGAATTTCTCCCATCACATAGA
TTCATTCATCTATCCCCTCTTTTTTCTCATCTCCCCCCTCCCCCCACTCC
TTCCATCCCCCTCCTCTTCTTCCCTCTTATTCTATTCCTCTATATACACA
CAAGCAACCTTCGCGCCTCTATCTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_2:1459479..1460616-

>mRNA_1193 ID=mRNA_1193|Name=jgi.p|Nanoce1779_2|575679|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_2:1459479..1460616- (Nannochloropsis oceanica)
ATGTCATTTGACATACGCATGGCGTTTACCAGAAGCTCTCTGTGGATGTC
CGATGCATCTCTTGGGTATGCCCTTCCTTGTTTCCCTTTATTTCCTTTTT
TATCTTCACTTCCTTCTATCGTCTTCTTTTTAATTCCTCTTCTCTTCTTT
CTCCTCCTTTGCCAGTTACTTTCCTGCTTTGACCCTCCTTATTATTCCGC
CCTCTTTTTTCCCCTCCCTTCTCTTCTCTTTTCTTTGCCATCATATTCGA
TGTCCTCCTCGTGGGTGTTTATTCATTGTTTGACAAAAGAGAATTCGTTT
CGTGTGTGCGTTGCTTGTTTTGCTCTACGAGAAGGATTTGTGTCGTGTGT
GCGTTGCTTATTCATTGTTTTGTCAGGAGAGTTTGTTTCGTGA
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Synonyms
Publications