jgi.p|Nanoce1779_2|622430, mRNA_1192 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622430
Unique Name	mRNA_1192
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	960
Alignment location	scaffold_2:1457498..1459445 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622516
Track	FilteredModels2
ProteinId	622430

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1457498..1459445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622430	gene_1192	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622430	mRNA_1192-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1192	CDS_1192	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1457498..1459445+
coding sequence from alignment at scaffold_2:1457498..1459445+

mRNA sequence

>mRNA_1192 ID=mRNA_1192|Name=jgi.p|Nanoce1779_2|622430|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGGAAGAAGGAGAACCAGAAGCACAACGAGCCGGTCTGAAGGCTGCGCG
TGCCTTGGTGGTGCTTGGTCTTATTACCGCCCGCGAGTGCAAACACCTCC
TATCGGCCCTCTCTTTCACCAAAACCCCTCCTTCGCCCCCTCCCCTCCAT
TCTTCCCAACCCCCCGCCGTTCCTACTTCCCCCTATCACTCTTCTGGAAA
AACTGTCTCTCCTCCTCCCCCTCCTCCTCCTCGACGTCTGGATCCCATTA
GTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGGACGCACACCTTCTGCTTC
CCTCCTTTGGGGGGGGGGGTAGGGAGGGAGGGAGGGAAAGAGGAAGGGTG
TGAGGTGGTTTACAACGTGAGGTCTTTGTGTGAATATCTGGTCGCCACGG
GTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGATTGAGGGGGAGGACGTG
CAGGCGCTGGCGAACAAGCTGGTGCTGCTCGGGGAGAGTGAGATGAAGGA
CAACTTGTGGGCTGCTTTTGCCTCGCCTGACCGTGCAGCGCTCTTGCGGG
AGCGTATGGATCTATTGGAGGGTCTCGACCGATGCGTAGGGGAGGTGGTG
ACAGAAATGCTGCGTGTGGTGGAGGGAGGGATGACGGCAGCCGTCTCGGC
GGCCGACGGCGAGGTGCGCCTGTGCATGCTCTTGCCCCATTTCGAGCACT
TCTTCAACCAGCTGGTGCAGGCGGATGAGATCTACGCCCTACAGTGCATC
GACCAGTACATTCGTGTGCTCAACGGCCCTCCGACCTACCCTACGAGCGA
CGCCCGAGGCCTCCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAAGGAGA
GGGATTTGGCGCGAAAGGTGGAGAGGAAGCGGAGGAAGCAGCAGAAGCAA
CAACACGAACAGCAGCAGCAGCCAGAAAGGAGGGGATGGATGGGGAGATG
GCTTGGATGA

protein sequence of jgi.p|Nanoce1779_2|622430

>mRNA_1192-protein ID=mRNA_1192-protein|Name=jgi.p|Nanoce1779_2|622430|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MEEGEPEAQRAGLKAARALVVLGLITARECKHLLSALSFTKTPPSPPPLH
SSQPPAVPTSPYHSSGKTVSPPPPPPPRRLDPISLEPLCEVEGGTHTFCF
PPLGGGVGREGGKEEGCEVVYNVRSLCEYLVATGQFVEPTSRRAIEGEDV
QALANKLVLLGESEMKDNLWAAFASPDRAALLRERMDLLEGLDRCVGEVV
TEMLRVVEGGMTAAVSAADGEVRLCMLLPHFEHFFNQLVQADEIYALQCI
DQYIRVLNGPPTYPTSDARGLLSACLSFLRDKERDLARKVERKRRKQQKQ
QHEQQQQPERRGWMGRWLG*

mRNA from alignment at scaffold_2:1457498..1459445+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1192 ID=mRNA_1192|Name=jgi.p|Nanoce1779_2|622430|organism=Nannochloropsis oceanica|type=mRNA|length=1948bp|location=Sequence derived from alignment at scaffold_2:1457498..1459445+ (Nannochloropsis oceanica)
ATGGAAGAAGGAGAACCAGAAGCACAACGAGCCGGTCTGAAGGCTGCGCG
TGCCTTGGTGGTGCTTGGTCTTATTACCGCCCGCGAGTGCAAACACCTCC
TATCGGCCCTCTCTTTCACCAAAACCCCTCCTTCGCCCCCTCCCCTCCAT
TCTTCCCAACCCCCCGCCGTTCCTACTTCCCCCTATCACTCTTCTGGAAA
AACTGTCTCTCCTCCTCCCCCTCCTCCTCCTCGACGTCTGGATCCCATTA
GTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGGACGCACACCTTCTGCTTC
CCTCCTTTGGGGGGGGGGGTAGGGAGGGAGGGAGGGAAAGAGGAAGGGTG
TGAGGTGGTTTACAACGTGAGGTCTTTGTGTGAATATCTGGTCGCCACGG
GTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGATTGAGGGGGAGGACGTG
CAGGTAAGGAGGGAGGGAGGGGGAAAGGGAGGGAAGAAGGGAGGATGGCT
TGGACGCCGGGCACATGTTCTAGAGAGGCGTTATTAAATGATGCATATTC
TACAGGCGCTGGCGAACAAGCTGGTGCTGCTCGGGGAGAGTGAGATGAAG
GACAACTTGTGGGCTGCTTTTGCCTCGCCTGACCGGTACGCGAGGGAGGG
AGAAAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGCGGCAG
ACACTTGAGGAAGAAAAATGCGCGCCTTGTCTTTATCGCCCTCCTTTTCC
TCCCTCCCTCCTTCCCCTCTCTTCTAATTGCTTTTCCGACTGGAGCGCAT
GGAGCTCACCACCTTGCCAAGCCTGTCCCTCACCTCCCTCCCTCCCTCCC
ACCCTCCCTCCCTTCTTCCCTCTCAATCGATGTACGTCCTCCCTCCTTCC
CTCCTCAGTGCAGCGCTCTTGCGGGAGCGTATGGATCTATTGGAGGGTCT
CGACCGATGCGTAGGGGAGGTGGTGACAGAAATGCTGCGTGTGGTGGAGG
GAGGGATGACGGCAGGTAGGGGGAGAGGGCGGGAGGGAGGGAGGGAAGGG
AGATGGGAGAGAGGCGTGGAGGGGCCAGGAACTTGCAGGCGACGAGCAAT
CAACTGTATGACGACCCTCGTCTTTCCTTCTGTCATTTCACTCGTCCTCT
TCCTTCCTTCCTCCCTCCCTCCCTCTCTCCCTCCTTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCACTTGCGCCCTAGCCGTCTCGGCGGCCGACGGCGA
GGTGCGCCTGTGCATGCTCTTGCCCCATTTCGAGCACTTCTTCAACCAGG
TCCACTCGCTTCCCTCTTCTCCCTCCCTCCCTCTCTCCCTCTCTCCCTCC
CTCCCTCTCTCCTTGCTCCGCTTTGACCATCTAGTTGCTCCCCTGACACT
CCATTACCACCTTCTCTCCCTTCCACTTCCCCTTCCTCCCTCCCCTCCGT
CCTTCCAGCTGGTGCAGGCGGATGAGATCTACGCCCTACAGTGCATCGAC
CAGTACATTCGTGTGCTCAAGTAAGGAAGCAGGGAGGGAAGGAGGGAGGG
AGGGAGGGAAGGTGGGTGTGAGAGAGAAGGAGGGAGGAAAGAAGGGAGGT
TGAGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAAGAAGAGGCGGACGAAA
AGTTAAGGGAAAACGCGCGGTGGAGGCTCTCAAATGACACCGTCGTTCTC
CTTTTCCTACGTCCCTCACCCCCTCCCTCCTTCCTTCCCTCCCTCCCTCC
CTCCCTGCAAGCGGCCCTCCGACCTACCCTACGAGCGACGCCCGAGGCCT
CCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAAGGAGAGGGATTTGGCGC
GAAAGGTGGAGAGGAAGCGGAGGAAGCAGCAGAAGCAACAACACGAACAG
CAGCAGCAGCCAGAAAGGAGGGGATGGATGGGGAGATGGCTTGGATGA

Coding sequence (CDS) from alignment at scaffold_2:1457498..1459445+

>mRNA_1192 ID=mRNA_1192|Name=jgi.p|Nanoce1779_2|622430|organism=Nannochloropsis oceanica|type=CDS|length=5760bp|location=Sequence derived from alignment at scaffold_2:1457498..1459445+ (Nannochloropsis oceanica)
ATGGAAGAAGGAGAACCAGAAGCACAACGAGCCGGTCTGAAGGCTGCGCG
TGCCTTGGTGGTGCTTGGTCTTATTACCGCCCGCGAGTGCAAACACCTCC
TATCGGCCCTCTCTTTCACCAAAACCCCTCCTTCGCCCCCTCCCCTCCAT
TCTTCCCAACCCCCCGCCGTTCCTACTTCCCCCTATCACTCTTCTGGAAA
AACTGTCTCTCCTCCTCCCCCTCCTCCTCCTCGACGTCTGGATCCCATTA
GTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGGACGCACACCTTCTGCTTC
CCTCCTTTGGGGGGGGGGGTAGGGAGGGAGGGAGGGAAAGAGGAAGGGTG
TGAGGTGGTTTACAACGTGAGGTCTTTGTGTGAATATCTGGTCGCCACGG
GTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGATTGAGGGGGAGGACGTG
CAGGCGCTGGCGAACAAGCTGGTGCTGCTCGGGGAGAGTGAGATGAAGGA
CAACTTGTGGGCTGCTTTTGCCTCGCCTGACCGTGCAGCGCTCTTGCGGG
AGCGTATGGATCTATTGGAGGGTCTCGACCGATGCGTAGGGGAGGTGGTG
ACAGAAATGCTGCGTGTGGTGGAGGGAGGGATGACGGCAGCCGTCTCGGC
GGCCGACGGCGAGGTGCGCCTGTGCATGCTCTTGCCCCATTTCGAGCACT
TCTTCAACCAGCTGGTGCAGGCGGATGAGATCTACGCCCTACAGTGCATC
GACCAGTACATTCGTGTGCTCAACGGCCCTCCGACCTACCCTACGAGCGA
CGCCCGAGGCCTCCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAAGGAGA
GGGATTTGGCGCGAAAGGTGGAGAGGAAGCGGAGGAAGCAGCAGAAGCAA
CAACACGAACAGCAGCAGCAGCCAGAAAGGAGGGGATGGATGGGGAGATG
GCTTGGATGAATGGAAGAAGGAGAACCAGAAGCACAACGAGCCGGTCTGA
AGGCTGCGCGTGCCTTGGTGGTGCTTGGTCTTATTACCGCCCGCGAGTGC
AAACACCTCCTATCGGCCCTCTCTTTCACCAAAACCCCTCCTTCGCCCCC
TCCCCTCCATTCTTCCCAACCCCCCGCCGTTCCTACTTCCCCCTATCACT
CTTCTGGAAAAACTGTCTCTCCTCCTCCCCCTCCTCCTCCTCGACGTCTG
GATCCCATTAGTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGGACGCACAC
CTTCTGCTTCCCTCCTTTGGGGGGGGGGGTAGGGAGGGAGGGAGGGAAAG
AGGAAGGGTGTGAGGTGGTTTACAACGTGAGGTCTTTGTGTGAATATCTG
GTCGCCACGGGTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGATTGAGGG
GGAGGACGTGCAGGCGCTGGCGAACAAGCTGGTGCTGCTCGGGGAGAGTG
AGATGAAGGACAACTTGTGGGCTGCTTTTGCCTCGCCTGACCGTGCAGCG
CTCTTGCGGGAGCGTATGGATCTATTGGAGGGTCTCGACCGATGCGTAGG
GGAGGTGGTGACAGAAATGCTGCGTGTGGTGGAGGGAGGGATGACGGCAG
CCGTCTCGGCGGCCGACGGCGAGGTGCGCCTGTGCATGCTCTTGCCCCAT
TTCGAGCACTTCTTCAACCAGCTGGTGCAGGCGGATGAGATCTACGCCCT
ACAGTGCATCGACCAGTACATTCGTGTGCTCAACGGCCCTCCGACCTACC
CTACGAGCGACGCCCGAGGCCTCCTGTCGGCCTGCCTCTCCTTCCTCCGC
GACAAGGAGAGGGATTTGGCGCGAAAGGTGGAGAGGAAGCGGAGGAAGCA
GCAGAAGCAACAACACGAACAGCAGCAGCAGCCAGAAAGGAGGGGATGGA
TGGGGAGATGGCTTGGATGAATGGAAGAAGGAGAACCAGAAGCACAACGA
GCCGGTCTGAAGGCTGCGCGTGCCTTGGTGGTGCTTGGTCTTATTACCGC
CCGCGAGTGCAAACACCTCCTATCGGCCCTCTCTTTCACCAAAACCCCTC
CTTCGCCCCCTCCCCTCCATTCTTCCCAACCCCCCGCCGTTCCTACTTCC
CCCTATCACTCTTCTGGAAAAACTGTCTCTCCTCCTCCCCCTCCTCCTCC
TCGACGTCTGGATCCCATTAGTCTTGAGCCGCTGTGTGAGGTGGAAGGAG
GGACGCACACCTTCTGCTTCCCTCCTTTGGGGGGGGGGGTAGGGAGGGAG
GGAGGGAAAGAGGAAGGGTGTGAGGTGGTTTACAACGTGAGGTCTTTGTG
TGAATATCTGGTCGCCACGGGTCAGTTCGTGGAGCCCACGAGCCGGAGAG
CGATTGAGGGGGAGGACGTGCAGGCGCTGGCGAACAAGCTGGTGCTGCTC
GGGGAGAGTGAGATGAAGGACAACTTGTGGGCTGCTTTTGCCTCGCCTGA
CCGTGCAGCGCTCTTGCGGGAGCGTATGGATCTATTGGAGGGTCTCGACC
GATGCGTAGGGGAGGTGGTGACAGAAATGCTGCGTGTGGTGGAGGGAGGG
ATGACGGCAGCCGTCTCGGCGGCCGACGGCGAGGTGCGCCTGTGCATGCT
CTTGCCCCATTTCGAGCACTTCTTCAACCAGCTGGTGCAGGCGGATGAGA
TCTACGCCCTACAGTGCATCGACCAGTACATTCGTGTGCTCAACGGCCCT
CCGACCTACCCTACGAGCGACGCCCGAGGCCTCCTGTCGGCCTGCCTCTC
CTTCCTCCGCGACAAGGAGAGGGATTTGGCGCGAAAGGTGGAGAGGAAGC
GGAGGAAGCAGCAGAAGCAACAACACGAACAGCAGCAGCAGCCAGAAAGG
AGGGGATGGATGGGGAGATGGCTTGGATGAATGGAAGAAGGAGAACCAGA
AGCACAACGAGCCGGTCTGAAGGCTGCGCGTGCCTTGGTGGTGCTTGGTC
TTATTACCGCCCGCGAGTGCAAACACCTCCTATCGGCCCTCTCTTTCACC
AAAACCCCTCCTTCGCCCCCTCCCCTCCATTCTTCCCAACCCCCCGCCGT
TCCTACTTCCCCCTATCACTCTTCTGGAAAAACTGTCTCTCCTCCTCCCC
CTCCTCCTCCTCGACGTCTGGATCCCATTAGTCTTGAGCCGCTGTGTGAG
GTGGAAGGAGGGACGCACACCTTCTGCTTCCCTCCTTTGGGGGGGGGGGT
AGGGAGGGAGGGAGGGAAAGAGGAAGGGTGTGAGGTGGTTTACAACGTGA
GGTCTTTGTGTGAATATCTGGTCGCCACGGGTCAGTTCGTGGAGCCCACG
AGCCGGAGAGCGATTGAGGGGGAGGACGTGCAGGCGCTGGCGAACAAGCT
GGTGCTGCTCGGGGAGAGTGAGATGAAGGACAACTTGTGGGCTGCTTTTG
CCTCGCCTGACCGTGCAGCGCTCTTGCGGGAGCGTATGGATCTATTGGAG
GGTCTCGACCGATGCGTAGGGGAGGTGGTGACAGAAATGCTGCGTGTGGT
GGAGGGAGGGATGACGGCAGCCGTCTCGGCGGCCGACGGCGAGGTGCGCC
TGTGCATGCTCTTGCCCCATTTCGAGCACTTCTTCAACCAGCTGGTGCAG
GCGGATGAGATCTACGCCCTACAGTGCATCGACCAGTACATTCGTGTGCT
CAACGGCCCTCCGACCTACCCTACGAGCGACGCCCGAGGCCTCCTGTCGG
CCTGCCTCTCCTTCCTCCGCGACAAGGAGAGGGATTTGGCGCGAAAGGTG
GAGAGGAAGCGGAGGAAGCAGCAGAAGCAACAACACGAACAGCAGCAGCA
GCCAGAAAGGAGGGGATGGATGGGGAGATGGCTTGGATGAATGGAAGAAG
GAGAACCAGAAGCACAACGAGCCGGTCTGAAGGCTGCGCGTGCCTTGGTG
GTGCTTGGTCTTATTACCGCCCGCGAGTGCAAACACCTCCTATCGGCCCT
CTCTTTCACCAAAACCCCTCCTTCGCCCCCTCCCCTCCATTCTTCCCAAC
CCCCCGCCGTTCCTACTTCCCCCTATCACTCTTCTGGAAAAACTGTCTCT
CCTCCTCCCCCTCCTCCTCCTCGACGTCTGGATCCCATTAGTCTTGAGCC
GCTGTGTGAGGTGGAAGGAGGGACGCACACCTTCTGCTTCCCTCCTTTGG
GGGGGGGGGTAGGGAGGGAGGGAGGGAAAGAGGAAGGGTGTGAGGTGGTT
TACAACGTGAGGTCTTTGTGTGAATATCTGGTCGCCACGGGTCAGTTCGT
GGAGCCCACGAGCCGGAGAGCGATTGAGGGGGAGGACGTGCAGGCGCTGG
CGAACAAGCTGGTGCTGCTCGGGGAGAGTGAGATGAAGGACAACTTGTGG
GCTGCTTTTGCCTCGCCTGACCGTGCAGCGCTCTTGCGGGAGCGTATGGA
TCTATTGGAGGGTCTCGACCGATGCGTAGGGGAGGTGGTGACAGAAATGC
TGCGTGTGGTGGAGGGAGGGATGACGGCAGCCGTCTCGGCGGCCGACGGC
GAGGTGCGCCTGTGCATGCTCTTGCCCCATTTCGAGCACTTCTTCAACCA
GCTGGTGCAGGCGGATGAGATCTACGCCCTACAGTGCATCGACCAGTACA
TTCGTGTGCTCAACGGCCCTCCGACCTACCCTACGAGCGACGCCCGAGGC
CTCCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAAGGAGAGGGATTTGGC
GCGAAAGGTGGAGAGGAAGCGGAGGAAGCAGCAGAAGCAACAACACGAAC
AGCAGCAGCAGCCAGAAAGGAGGGGATGGATGGGGAGATGGCTTGGATGA
ATGGAAGAAGGAGAACCAGAAGCACAACGAGCCGGTCTGAAGGCTGCGCG
TGCCTTGGTGGTGCTTGGTCTTATTACCGCCCGCGAGTGCAAACACCTCC
TATCGGCCCTCTCTTTCACCAAAACCCCTCCTTCGCCCCCTCCCCTCCAT
TCTTCCCAACCCCCCGCCGTTCCTACTTCCCCCTATCACTCTTCTGGAAA
AACTGTCTCTCCTCCTCCCCCTCCTCCTCCTCGACGTCTGGATCCCATTA
GTCTTGAGCCGCTGTGTGAGGTGGAAGGAGGGACGCACACCTTCTGCTTC
CCTCCTTTGGGGGGGGGGGTAGGGAGGGAGGGAGGGAAAGAGGAAGGGTG
TGAGGTGGTTTACAACGTGAGGTCTTTGTGTGAATATCTGGTCGCCACGG
GTCAGTTCGTGGAGCCCACGAGCCGGAGAGCGATTGAGGGGGAGGACGTG
CAGGCGCTGGCGAACAAGCTGGTGCTGCTCGGGGAGAGTGAGATGAAGGA
CAACTTGTGGGCTGCTTTTGCCTCGCCTGACCGTGCAGCGCTCTTGCGGG
AGCGTATGGATCTATTGGAGGGTCTCGACCGATGCGTAGGGGAGGTGGTG
ACAGAAATGCTGCGTGTGGTGGAGGGAGGGATGACGGCAGCCGTCTCGGC
GGCCGACGGCGAGGTGCGCCTGTGCATGCTCTTGCCCCATTTCGAGCACT
TCTTCAACCAGCTGGTGCAGGCGGATGAGATCTACGCCCTACAGTGCATC
GACCAGTACATTCGTGTGCTCAACGGCCCTCCGACCTACCCTACGAGCGA
CGCCCGAGGCCTCCTGTCGGCCTGCCTCTCCTTCCTCCGCGACAAGGAGA
GGGATTTGGCGCGAAAGGTGGAGAGGAAGCGGAGGAAGCAGCAGAAGCAA
CAACACGAACAGCAGCAGCAGCCAGAAAGGAGGGGATGGATGGGGAGATG
GCTTGGATGA

Synonyms

Publications