jgi.p|Nanoce1779_2|575673, mRNA_1191 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575673
Unique NamemRNA_1191
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length423
Alignment locationscaffold_2:1455785..1456632 -

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Properties
Property NameValue
TranscriptId575759
TrackFilteredModels2
ProteinId575673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1455785..1456632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575673gene_1191Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575673mRNA_1191-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1191CDS_1191Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1191 ID=mRNA_1191|Name=jgi.p|Nanoce1779_2|575673|organism=Nannochloropsis oceanica|type=mRNA|length=423bp
CAGGCATGGCGTCCGACGGTGGCAATGCAGACACGTACGCCTACGAGGAG
GAGCAGGAACGAAAGGCCTTGTTGCAGAGTTTGTACGGCCCGATGAAGAC
CTGGTTTCATGGGGGGGAGGCGAGCAGCATCAAGGAGCGCTTCGGACCCT
ACCCTTCGTTTTGGCAAGACCTGCTCACGTGGGAGCACACACGCGTGGTC
CAAAAGTTGTATCTGCGGTGGATGGACACAGGGGCCAGCGGGGAGGACTT
GCTGGGTATCTTGGGAGATACAAAGAAAGAGGTGACAGTGGAAGTGGTCG
AGGCAGCTGCTGGGACGAATGAGGGAGGACAGGCATGTGAATGGGGGAGC
AGGGAATGGAGGGGGGCGCTCGTCTAGCGCCCTGACGGAGGAGCAGCAGC
AGCAGGAAGAGCAGAAGGAGCAG
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protein sequence of jgi.p|Nanoce1779_2|575673

>mRNA_1191-protein ID=mRNA_1191-protein|Name=jgi.p|Nanoce1779_2|575673|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MASDGGNADTYAYEEEQERKALLQSLYGPMKTWFHGGEASSIKERFGPYP
SFWQDLLTWEHTRVVQKLYLRWMDTGASGEDLLGILGDTKKEVTVEVVEA
AAGTNEGGQACEWGSREWRGALV*
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mRNA from alignment at scaffold_2:1455785..1456632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1191 ID=mRNA_1191|Name=jgi.p|Nanoce1779_2|575673|organism=Nannochloropsis oceanica|type=mRNA|length=848bp|location=Sequence derived from alignment at scaffold_2:1455785..1456632- (Nannochloropsis oceanica)
CAGGCATGGCGTCCGACGGTGGCAATGCAGACACGTACGCCTACGAGGAG
GAGCAGGAACGAAAGGCCTTGTTGCAGAGTTTGTACGGCCCGATGAAGAC
CTGGTTTCATGGGGGGGAGGCGAGCAGGTAAAGAGGAAAAGAGGGAGGGG
GCATGTGGAACGGCCACTCGTGCGGGTTGTAGGAAAGGTCGGCGGCTGCT
TGTCATTCGGCTTGTATGGATGTAGCATGCAGCTTGTCTAGTCCGCGGCG
GGAGGAAACCATATGCCTACCTGATGGGATGTCTTCGTATACTCACCCAT
CATCTAGTAACTTATTTTCCATCTCCGTTCATTCATCTTTTCTTGGCTGG
ACACCCACAGCATCAAGGAGCGCTTCGGACCCTACCCTTCGTTTTGGCAA
GACCTGCTCACGTGGGAGCACACACGGTGGGTGGAGTAAGGGGGGTGGGG
GGAGGGGAAGAATTAAAGGGGAAATAAAAGACGTGAAGGGCACGTCATGG
ATTCGATAGGGTATGCTGGAGTGGGTGCCGGTAGTAGGTCCAATCACCTT
ACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGCGTGGTCCAAAAGT
TGTATCTGCGGTGGATGGACACAGGGGCCAGCGGGGAGGACTTGCTGGGT
ATCTTGGGAGATACAAAGAAAGAGGTGACAGTGGAAGTGGTCGAGGCAGC
TGCTGGGACGAATGAGGGAGGGAAGGAGGGAGGGGGGGAGGTAGGGGGGG
AGGACAGGCATGTGAATGGGGGAGCAGGGAATGGAGGGGGGCGCTCGTCT
AGCGCCCTGACGGAGGAGCAGCAGCAGCAGGAAGAGCAGAAGGAGCAG
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Coding sequence (CDS) from alignment at scaffold_2:1455785..1456632-

>mRNA_1191 ID=mRNA_1191|Name=jgi.p|Nanoce1779_2|575673|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_2:1455785..1456632- (Nannochloropsis oceanica)
GGGAGGACAGGCATGTGAATGGGGGAGCAGGGAATGGAGGGGGGCGCTCG
TCTAGCGTGGTCCAAAAGTTGTATCTGCGGTGGATGGACACAGGGGCCAG
CGGGGAGGACTTGCTGGGTATCTTGGGAGATACAAAGAAAGAGGTGACAG
TGGAAGTGGTCGAGGCAGCTGCTGGGACGAATGACATCAAGGAGCGCTTC
GGACCCTACCCTTCGTTTTGGCAAGACCTGCTCACGTGGGAGCACACACG
ATGGCGTCCGACGGTGGCAATGCAGACACGTACGCCTACGAGGAGGAGCA
GGAACGAAAGGCCTTGTTGCAGAGTTTGTACGGCCCGATGAAGACCTGGT
TTCATGGGGGGGAGGCGAGCAGGGGAGGACAGGCATGTGAATGGGGGAGC
AGGGAATGGAGGGGGGCGCTCGTCTAGCGTGGTCCAAAAGTTGTATCTGC
GGTGGATGGACACAGGGGCCAGCGGGGAGGACTTGCTGGGTATCTTGGGA
GATACAAAGAAAGAGGTGACAGTGGAAGTGGTCGAGGCAGCTGCTGGGAC
GAATGACATCAAGGAGCGCTTCGGACCCTACCCTTCGTTTTGGCAAGACC
TGCTCACGTGGGAGCACACACGATGGCGTCCGACGGTGGCAATGCAGACA
CGTACGCCTACGAGGAGGAGCAGGAACGAAAGGCCTTGTTGCAGAGTTTG
TACGGCCCGATGAAGACCTGGTTTCATGGGGGGGAGGCGAGCAGGGGAGG
ACAGGCATGTGAATGGGGGAGCAGGGAATGGAGGGGGGCGCTCGTCTAGC
GTGGTCCAAAAGTTGTATCTGCGGTGGATGGACACAGGGGCCAGCGGGGA
GGACTTGCTGGGTATCTTGGGAGATACAAAGAAAGAGGTGACAGTGGAAG
TGGTCGAGGCAGCTGCTGGGACGAATGACATCAAGGAGCGCTTCGGACCC
TACCCTTCGTTTTGGCAAGACCTGCTCACGTGGGAGCACACACGATGGCG
TCCGACGGTGGCAATGCAGACACGTACGCCTACGAGGAGGAGCAGGAACG
AAAGGCCTTGTTGCAGAGTTTGTACGGCCCGATGAAGACCTGGTTTCATG
GGGGGGAGGCGAGCAGGGGAGGACAGGCATGTGAATGGGGGAGCAGGGAA
TGGAGGGGGGCGCTCGTCTAGCGTGGTCCAAAAGTTGTATCTGCGGTGGA
TGGACACAGGGGCCAGCGGGGAGGACTTGCTGGGTATCTTGGGAGATACA
AAGAAAGAGGTGACAGTGGAAGTGGTCGAGGCAGCTGCTGGGACGAATGA
CATCAAGGAGCGCTTCGGACCCTACCCTTCGTTTTGGCAAGACCTGCTCA
CGTGGGAGCACACACGATGGCGTCCGACGGTGGCAATGCAGACACGTACG
CCTACGAGGAGGAGCAGGAACGAAAGGCCTTGTTGCAGAGTTTGTACGGC
CCGATGAAGACCTGGTTTCATGGGGGGGAGGCGAGCAG
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Synonyms
Publications