jgi.p|Nanoce1779_2|576285, mRNA_119 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576285
Unique NamemRNA_119
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1088
Alignment locationscaffold_3:318798..319885 +

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Properties
Property NameValue
TranscriptId576371
TrackFilteredModels2
ProteinId576285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:318798..319885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576285gene_119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576285mRNA_119-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_119CDS_119Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_119 ID=mRNA_119|Name=jgi.p|Nanoce1779_2|576285|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp
GAAAGCGAGACGGCAGCAGCAGCGGCGGCAGCAGCGGCAGCCGCAAAGGC
AGCGAATGCAGCAGCCGAGGCGAGGCGACGATACCTGGCGCACTTCTTCG
AAGAGATAATTTTGTTTGTCGACATCCGTCATGCCGTCACGGGCAAGTCT
CTCATTTCCATGGCTGTACCTTTGACCTTGGCCAATGTTCGCAAACTCTT
CAAGGCAGACATGCGCTTGGCGGGGCATTACGACGGAATAGATGTGCAGG
AGACGTTTTTGGTGCCGGGAGTAGAATTGGATCTCGATGACAATGAGGCG
CAGGCCTTTATGGCAGCAGTAACGGAGGGAGAGCAGAATGAGAATATGGA
AGAGGGGGTTAGTAATGCCAGATTTGGTGCCATCGCGGGGTTAAGGTTTG
AATTCTCGCTTTTTCACCGAAAGGCTAAGACCATGGCACTGTTGGGTCGG
GGGCAGGCGGATTTGGATAGGCGCTTGAATGGGTACGGACCTCGGTTTGT
AGCTGCTGATGATGAAACAGAAGCGGCCAATAATCAGACGAAGGTGCAAG
AAGGACGATTTTTTGGAGAGGGTGCTGAGTTCTTGTGCGCTGTTCCCCTT
TTTGCCTGGATTTTTGCCTCGTCATCCTCTTCGATGTCGGCGGTGGTTAA
AGGCGGAGAGGGAGAGGCTGCAAGGAGGAGTCGACATCGTGTGACATTGG
ATGCTTTAGCAATTGAAGTACATTATGTCGATACGGCTGATACGTCGGTG
CGGCCCCAGGATGAGCTCTTGGAATGCTTGTATCAGATCGTAAAGAAGGA
GTTAGTGTGGGTGTAAGAGGGACAAATGTGTGAATACATTGAGAATGCTG
GACGATGGAGAAGAGGAAGATGAATGTGGCGGAGATGAAAACGATATTTC
TATTACCTTTATTCAATCATGTATGATGCATATTTAATTCTGCGGATAAA
TTCGTATTGGCGAGTGGGTGGGCGGAGATGTACGAGCAAAGAAGGGCAGC
TATGGCAGCATCAAGCATCAAGAACCATTCCTACTCTTAACCGAGAAAAG
TTTTAGAAGAACAGATAAAGAAGCAACACAAATTTTGC
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protein sequence of jgi.p|Nanoce1779_2|576285

>mRNA_119-protein ID=mRNA_119-protein|Name=jgi.p|Nanoce1779_2|576285|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MAVPLTLANVRKLFKADMRLAGHYDGIDVQETFLVPGVELDLDDNEAQAF
MAAVTEGEQNENMEEGVSNARFGAIAGLRFEFSLFHRKAKTMALLGRGQA
DLDRRLNGYGPRFVAADDETEAANNQTKVQEGRFFGEGAEFLCAVPLFAW
IFASSSSSMSAVVKGGEGEAARRSRHRVTLDALAIEVHYVDTADTSVRPQ
DELLECLYQIVKKELVWV*
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mRNA from alignment at scaffold_3:318798..319885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_119 ID=mRNA_119|Name=jgi.p|Nanoce1779_2|576285|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp|location=Sequence derived from alignment at scaffold_3:318798..319885+ (Nannochloropsis oceanica)
GAAAGCGAGACGGCAGCAGCAGCGGCGGCAGCAGCGGCAGCCGCAAAGGC
AGCGAATGCAGCAGCCGAGGCGAGGCGACGATACCTGGCGCACTTCTTCG
AAGAGATAATTTTGTTTGTCGACATCCGTCATGCCGTCACGGGCAAGTCT
CTCATTTCCATGGCTGTACCTTTGACCTTGGCCAATGTTCGCAAACTCTT
CAAGGCAGACATGCGCTTGGCGGGGCATTACGACGGAATAGATGTGCAGG
AGACGTTTTTGGTGCCGGGAGTAGAATTGGATCTCGATGACAATGAGGCG
CAGGCCTTTATGGCAGCAGTAACGGAGGGAGAGCAGAATGAGAATATGGA
AGAGGGGGTTAGTAATGCCAGATTTGGTGCCATCGCGGGGTTAAGGTTTG
AATTCTCGCTTTTTCACCGAAAGGCTAAGACCATGGCACTGTTGGGTCGG
GGGCAGGCGGATTTGGATAGGCGCTTGAATGGGTACGGACCTCGGTTTGT
AGCTGCTGATGATGAAACAGAAGCGGCCAATAATCAGACGAAGGTGCAAG
AAGGACGATTTTTTGGAGAGGGTGCTGAGTTCTTGTGCGCTGTTCCCCTT
TTTGCCTGGATTTTTGCCTCGTCATCCTCTTCGATGTCGGCGGTGGTTAA
AGGCGGAGAGGGAGAGGCTGCAAGGAGGAGTCGACATCGTGTGACATTGG
ATGCTTTAGCAATTGAAGTACATTATGTCGATACGGCTGATACGTCGGTG
CGGCCCCAGGATGAGCTCTTGGAATGCTTGTATCAGATCGTAAAGAAGGA
GTTAGTGTGGGTGTAAGAGGGACAAATGTGTGAATACATTGAGAATGCTG
GACGATGGAGAAGAGGAAGATGAATGTGGCGGAGATGAAAACGATATTTC
TATTACCTTTATTCAATCATGTATGATGCATATTTAATTCTGCGGATAAA
TTCGTATTGGCGAGTGGGTGGGCGGAGATGTACGAGCAAAGAAGGGCAGC
TATGGCAGCATCAAGCATCAAGAACCATTCCTACTCTTAACCGAGAAAAG
TTTTAGAAGAACAGATAAAGAAGCAACACAAATTTTGC
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Coding sequence (CDS) from alignment at scaffold_3:318798..319885+

>mRNA_119 ID=mRNA_119|Name=jgi.p|Nanoce1779_2|576285|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_3:318798..319885+ (Nannochloropsis oceanica)
ATGGCTGTACCTTTGACCTTGGCCAATGTTCGCAAACTCTTCAAGGCAGA
CATGCGCTTGGCGGGGCATTACGACGGAATAGATGTGCAGGAGACGTTTT
TGGTGCCGGGAGTAGAATTGGATCTCGATGACAATGAGGCGCAGGCCTTT
ATGGCAGCAGTAACGGAGGGAGAGCAGAATGAGAATATGGAAGAGGGGGT
TAGTAATGCCAGATTTGGTGCCATCGCGGGGTTAAGGTTTGAATTCTCGC
TTTTTCACCGAAAGGCTAAGACCATGGCACTGTTGGGTCGGGGGCAGGCG
GATTTGGATAGGCGCTTGAATGGGTACGGACCTCGGTTTGTAGCTGCTGA
TGATGAAACAGAAGCGGCCAATAATCAGACGAAGGTGCAAGAAGGACGAT
TTTTTGGAGAGGGTGCTGAGTTCTTGTGCGCTGTTCCCCTTTTTGCCTGG
ATTTTTGCCTCGTCATCCTCTTCGATGTCGGCGGTGGTTAAAGGCGGAGA
GGGAGAGGCTGCAAGGAGGAGTCGACATCGTGTGACATTGGATGCTTTAG
CAATTGAAGTACATTATGTCGATACGGCTGATACGTCGGTGCGGCCCCAG
GATGAGCTCTTGGAATGCTTGTATCAGATCGTAAAGAAGGAGTTAGTGTG
GGTGTAA
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Synonyms
Publications