jgi.p|Nanoce1779_2|668110, mRNA_1189 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668110
Unique NamemRNA_1189
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length935
Alignment locationscaffold_2:1452249..1453464 -

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Properties
Property NameValue
TranscriptId668196
TrackFilteredModels2
ProteinId668110
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1452249..1453464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668110gene_1189Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668110mRNA_1189-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1189CDS_1189Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1189 ID=mRNA_1189|Name=jgi.p|Nanoce1779_2|668110|organism=Nannochloropsis oceanica|type=mRNA|length=935bp
GAGGAGTACTGCAACTTGTGCGGTACGTGAAACAGCAGTCGCAGCAGCGG
CAGGGATGAAGGGAGGGAGGGATTTTTGACTGACATGACACCCCGACCCA
AGAAGGTGTTTTGACTGACATGACACCCCGACCCGTGAATGGCACGACAG
GCGAAAAGGGCCACCGGCAATTTGAATGCCCCACGCGACACAATACCAAG
GTGAAGATGGTGAACGTGAAGTGCGCCATCTGCGGGGACACGTCGCATCC
TACACGGGACTGTCGCATGGGCGGCCAAGCCGGAGCCCAAGGCGGGAACA
AGGAAGTTCTAGATCAAGAATATCTCAATTTCATGGCCGAGCTCGGCGAG
GGGCCCCCTCCCTCCTCCTCCTCCTCCTCCTCAAGTGCTCCTCCCCCCCG
CCCTTCCCCTCGTCAGGAATCTCCGGCCCCTCCCTCAGCGCCCGCCTTGT
CTTCCTCCTCGTCCTCTTCCTCCTCGTCCTCCTCCTCCTACTACGGCGCA
CAAAAGACAGCAGGCGAGGCAGGTCACTCTGCGCCCCAGCACCACCAGCA
GCAGCAGCCAAGTGCTGCCTCCTCTCCTTACTATCGAACATCAGAAGCAG
CAGTAGGGACAACAGCAGCAGCCACAGGAGCTGCAGCCGGAGGGACGTAC
GCTTACTCTACCAACCACCACAATCCTTATTCTGCTGCTCCTGCTGCCTC
GTATGGAGGGAACTCTTTGGGAGGATACGACTACTCCACTTTCTACAGTC
AACAAGCCGCGGCTGCCTCTTACTACACACAACCGTACCAGCACCAGCAC
CAGCACCAGCACCAGCAATACATGTATGCCGCCTACCCTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCTCGGGTCCGGGGGGGCTGCCCCCTCCCC
CGCCCCCGCCACCGCCACCGCCTGAGACGGCCTAG
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protein sequence of jgi.p|Nanoce1779_2|668110

>mRNA_1189-protein ID=mRNA_1189-protein|Name=jgi.p|Nanoce1779_2|668110|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MTPRPVNGTTGEKGHRQFECPTRHNTKVKMVNVKCAICGDTSHPTRDCRM
GGQAGAQGGNKEVLDQEYLNFMAELGEGPPPSSSSSSSSAPPPRPSPRQE
SPAPPSAPALSSSSSSSSSSSSSYYGAQKTAGEAGHSAPQHHQQQQPSAA
SSPYYRTSEAAVGTTAAATGAAAGGTYAYSTNHHNPYSAAPAASYGGNSL
GGYDYSTFYSQQAAAASYYTQPYQHQHQHQHQQYMYAAYPPPPPPPPPPP
PSGPGGLPPPPPPPPPPPETA*
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mRNA from alignment at scaffold_2:1452249..1453464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1189 ID=mRNA_1189|Name=jgi.p|Nanoce1779_2|668110|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp|location=Sequence derived from alignment at scaffold_2:1452249..1453464- (Nannochloropsis oceanica)
GAGGAGTACTGCAACTTGTGCGGTACGTGAAACAGCAGTCGCAGCAGCGG
CAGGGATGAAGGGAGGGAGGGAGGGAGGGAGGGGTGAGACAACAAGCTCA
GGAGAAGGGGAGGGAGGGAGGGAAGGAGGGATTTTTGACTGACATGACAC
CCCGACCCAAGAAGGTGTTTTGACTGACATGACACCCCGACCCGTGAATG
GCACGACAGGCGAAAAGGGCCACCGGCAATTTGAATGCCCCACGCGACAC
AATACCAAGGTAGTTTCCGTTCGCTCTCTTTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCACCCACAAACCCGAACATGGAAGTCCTCACCCCTCCGT
CCCTCCCTCCCTCCCTTCTCCAGGTGAAGATGGTGAACGTGAAGTGCGCC
ATCTGCGGGGACACGTCGCATCCTACACGGGACTGTCGCATGGGCGGCCA
AGCCGGAGGTAAGGATGGGAAAACAGAAAAGAGAAGGATGGAAGGGTGAA
TGACGAAATTGGCATGCACAAACAGGGCCCTAATCATCCCTTTCCTCCAT
CCCTCCCTCCCTCCAGCCCAAGGCGGGAACAAGGAAGTTCTAGATCAAGA
ATATCTCAATTTCATGGCCGAGCTCGGCGAGGGGCCCCCTCCCTCCTCCT
CCTCCTCCTCCTCAAGTGCTCCTCCCCCCCGCCCTTCCCCTCGTCAGGAA
TCTCCGGCCCCTCCCTCAGCGCCCGCCTTGTCTTCCTCCTCGTCCTCTTC
CTCCTCGTCCTCCTCCTCCTACTACGGCGCACAAAAGACAGCAGGCGAGG
CAGGTCACTCTGCGCCCCAGCACCACCAGCAGCAGCAGCCAAGTGCTGCC
TCCTCTCCTTACTATCGAACATCAGAAGCAGCAGTAGGGACAACAGCAGC
AGCCACAGGAGCTGCAGCCGGAGGGACGTACGCTTACTCTACCAACCACC
ACAATCCTTATTCTGCTGCTCCTGCTGCCTCGTATGGAGGGAACTCTTTG
GGAGGATACGACTACTCCACTTTCTACAGTCAACAAGCCGCGGCTGCCTC
TTACTACACACAACCGTACCAGCACCAGCACCAGCACCAGCACCAGCAAT
ACATGTATGCCGCCTACCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCT
CCCTCGGGTCCGGGGGGGCTGCCCCCTCCCCCGCCCCCGCCACCGCCACC
GCCTGAGACGGCCTAG
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Coding sequence (CDS) from alignment at scaffold_2:1452249..1453464-

>mRNA_1189 ID=mRNA_1189|Name=jgi.p|Nanoce1779_2|668110|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_2:1452249..1453464- (Nannochloropsis oceanica)
CCCAAGGCGGGAACAAGGAAGTTCTAGATCAAGAATATCTCAATTTCATG
GCCGAGCTCGGCGAGGGGCCCCCTCCCTCCTCCTCCTCCTCCTCCTCAAG
TGCTCCTCCCCCCCGCCCTTCCCCTCGTCAGGAATCTCCGGCCCCTCCCT
CAGCGCCCGCCTTGTCTTCCTCCTCGTCCTCTTCCTCCTCGTCCTCCTCC
TCCTACTACGGCGCACAAAAGACAGCAGGCGAGGCAGGTCACTCTGCGCC
CCAGCACCACCAGCAGCAGCAGCCAAGTGCTGCCTCCTCTCCTTACTATC
GAACATCAGAAGCAGCAGTAGGGACAACAGCAGCAGCCACAGGAGCTGCA
GCCGGAGGGACGTACGCTTACTCTACCAACCACCACAATCCTTATTCTGC
TGCTCCTGCTGCCTCGTATGGAGGGAACTCTTTGGGAGGATACGACTACT
CCACTTTCTACAGTCAACAAGCCGCGGCTGCCTCTTACTACACACAACCG
TACCAGCACCAGCACCAGCACCAGCACCAGCAATACATGTATGCCGCCTA
CCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCGGGTCCGGGGG
GGCTGCCCCCTCCCCCGCCCCCGCCACCGCCACCGCCTGAGACGGCCTAG
GTGAAGATGGTGAACGTGAAGTGCGCCATCTGCGGGGACACGTCGCATCC
TACACGGGACTGTCGCATGGGCGGCCAAGCCGGAGATGACACCCCGACCC
GTGAATGGCACGACAGGCGAAAAGGGCCACCGGCAATTTGAATGCCCCAC
GCGACACAATACCAAGCCCAAGGCGGGAACAAGGAAGTTCTAGATCAAGA
ATATCTCAATTTCATGGCCGAGCTCGGCGAGGGGCCCCCTCCCTCCTCCT
CCTCCTCCTCCTCAAGTGCTCCTCCCCCCCGCCCTTCCCCTCGTCAGGAA
TCTCCGGCCCCTCCCTCAGCGCCCGCCTTGTCTTCCTCCTCGTCCTCTTC
CTCCTCGTCCTCCTCCTCCTACTACGGCGCACAAAAGACAGCAGGCGAGG
CAGGTCACTCTGCGCCCCAGCACCACCAGCAGCAGCAGCCAAGTGCTGCC
TCCTCTCCTTACTATCGAACATCAGAAGCAGCAGTAGGGACAACAGCAGC
AGCCACAGGAGCTGCAGCCGGAGGGACGTACGCTTACTCTACCAACCACC
ACAATCCTTATTCTGCTGCTCCTGCTGCCTCGTATGGAGGGAACTCTTTG
GGAGGATACGACTACTCCACTTTCTACAGTCAACAAGCCGCGGCTGCCTC
TTACTACACACAACCGTACCAGCACCAGCACCAGCACCAGCACCAGCAAT
ACATGTATGCCGCCTACCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCT
CCCTCGGGTCCGGGGGGGCTGCCCCCTCCCCCGCCCCCGCCACCGCCACC
GCCTGAGACGGCCTAGGTGAAGATGGTGAACGTGAAGTGCGCCATCTGCG
GGGACACGTCGCATCCTACACGGGACTGTCGCATGGGCGGCCAAGCCGGA
GATGACACCCCGACCCGTGAATGGCACGACAGGCGAAAAGGGCCACCGGC
AATTTGAATGCCCCACGCGACACAATACCAAGCCCAAGGCGGGAACAAGG
AAGTTCTAGATCAAGAATATCTCAATTTCATGGCCGAGCTCGGCGAGGGG
CCCCCTCCCTCCTCCTCCTCCTCCTCCTCAAGTGCTCCTCCCCCCCGCCC
TTCCCCTCGTCAGGAATCTCCGGCCCCTCCCTCAGCGCCCGCCTTGTCTT
CCTCCTCGTCCTCTTCCTCCTCGTCCTCCTCCTCCTACTACGGCGCACAA
AAGACAGCAGGCGAGGCAGGTCACTCTGCGCCCCAGCACCACCAGCAGCA
GCAGCCAAGTGCTGCCTCCTCTCCTTACTATCGAACATCAGAAGCAGCAG
TAGGGACAACAGCAGCAGCCACAGGAGCTGCAGCCGGAGGGACGTACGCT
TACTCTACCAACCACCACAATCCTTATTCTGCTGCTCCTGCTGCCTCGTA
TGGAGGGAACTCTTTGGGAGGATACGACTACTCCACTTTCTACAGTCAAC
AAGCCGCGGCTGCCTCTTACTACACACAACCGTACCAGCACCAGCACCAG
CACCAGCACCAGCAATACATGTATGCCGCCTACCCTCCCCCTCCCCCTCC
CCCTCCCCCTCCCCCTCCCTCGGGTCCGGGGGGGCTGCCCCCTCCCCCGC
CCCCGCCACCGCCACCGCCTGAGACGGCCTAGGTGAAGATGGTGAACGTG
AAGTGCGCCATCTGCGGGGACACGTCGCATCCTACACGGGACTGTCGCAT
GGGCGGCCAAGCCGGAGATGACACCCCGACCCGTGAATGGCACGACAGGC
GAAAAGGGCCACCGGCAATTTGAATGCCCCACGCGACACAATACCAAG
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Synonyms
Publications