jgi.p|Nanoce1779_2|155075, mRNA_1188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|155075
Unique NamemRNA_1188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length994
Alignment locationscaffold_2:1450620..1451613 +

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Properties
Property NameValue
TranscriptId155161
TrackFilteredModels2
ProteinId155075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1450620..1451613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155075gene_1188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|155075mRNA_1188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1188CDS_1188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1188 ID=mRNA_1188|Name=jgi.p|Nanoce1779_2|155075|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
GAACTTGCCTCTCGCGCCGGTGCAGGTGTTAGTCCTAGAGGCTTATCGGA
TGGCCGGGGCCAGGGCAGCGCTGGCAGGGGGGGAGGAAGTGGAGGAGGAG
GAGGAAGAGAAGGAGGAGGATGAAAGGGGCGTGGGAATTTCCGGTAATGC
TGCAAATTACCTTTCATGCGAGGGTACCAGTAGTGCAGTCTCCTTCCCCT
CCTTCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCGTCCTCT
TCGGCTGCTGCTGGTCGGCACTTTTTGAGCGCAAGTCACCTCTCTCTCGC
CTTTACTGGCATCCTTTCCATTATCACTGCCGTGATTCTTCCTCTTCTCT
ACAACGAAATGATCCTCCCACCTTCCCAAGAAGCCGACAGCTTTCCCTCC
CCTTCTCTGCGTCGACAGACTCTGGTCTTTGCCTCTCTCCTCCTCACCCA
CCCCCTTCTGGCCCTACACCTTCACAATCCCTTCCGTCCCTCCTCCTTCT
CCCTCGGCTGCCCCGATGAGACGGGAATGCAAGGAAAGTTGTTGTGGCCA
CCCTCTTTAGTCTGGTTGTTGGTGGTCTGCCTCTTCCTCTGGCTCGTGGC
ATCAGATCGGCACATTCAGGCGGTCTTCGGCTTTGTCCCCTTGGGACGGG
AATTGTGGGGTGCGGTAGGCCTGTCTGCAGTAGGAGGGACGACGGTTTGG
ATGGAGGTGGGGAAATGTGGAATCTGGTGCGTGGGAAGGCAGAGGAGAGT
GAGGTGGGGGGGTGGGAGGGAGCGAGGGAGCGCGGGAGGGAGGAGGAAGA
GAGGATATGGAACCATGCGGGGGCGGGGAAGTGGTGAAGGAGAGGAAGGA
GAAAGAGGAAGAGGAAGCGTTAATCTTGATGGTGGCGGTGGTAGTAGAAT
AGAAACTCGTGACTTGGAAGAGCAAGCACCGTTGCTGGTGGGGAGATAGG
GAGGAAGAAGTCGCCAGAGGCACAGCGCGGGGGAGAGAGAGGAT
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protein sequence of jgi.p|Nanoce1779_2|155075

>mRNA_1188-protein ID=mRNA_1188-protein|Name=jgi.p|Nanoce1779_2|155075|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MAGARAALAGGEEVEEEEEEKEEDERGVGISGNAANYLSCEGTSSAVSFP
SFSSFSSSSSSSSLSSSSAAAGRHFLSASHLSLAFTGILSIITAVILPLL
YNEMILPPSQEADSFPSPSLRRQTLVFASLLLTHPLLALHLHNPFRPSSF
SLGCPDETGMQGKLLWPPSLVWLLVVCLFLWLVASDRHIQAVFGFVPLGR
ELWGAVGLSAVGGTTVWMEVGKCGIWCVGRQRRVRWGGGRERGSAGGRRK
RGYGTMRGRGSGEGEEGERGRGSVNLDGGGGSRIETRDLEEQAPLLVGR*
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mRNA from alignment at scaffold_2:1450620..1451613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1188 ID=mRNA_1188|Name=jgi.p|Nanoce1779_2|155075|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at scaffold_2:1450620..1451613+ (Nannochloropsis oceanica)
GAACTTGCCTCTCGCGCCGGTGCAGGTGTTAGTCCTAGAGGCTTATCGGA
TGGCCGGGGCCAGGGCAGCGCTGGCAGGGGGGGAGGAAGTGGAGGAGGAG
GAGGAAGAGAAGGAGGAGGATGAAAGGGGCGTGGGAATTTCCGGTAATGC
TGCAAATTACCTTTCATGCGAGGGTACCAGTAGTGCAGTCTCCTTCCCCT
CCTTCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCGTCCTCT
TCGGCTGCTGCTGGTCGGCACTTTTTGAGCGCAAGTCACCTCTCTCTCGC
CTTTACTGGCATCCTTTCCATTATCACTGCCGTGATTCTTCCTCTTCTCT
ACAACGAAATGATCCTCCCACCTTCCCAAGAAGCCGACAGCTTTCCCTCC
CCTTCTCTGCGTCGACAGACTCTGGTCTTTGCCTCTCTCCTCCTCACCCA
CCCCCTTCTGGCCCTACACCTTCACAATCCCTTCCGTCCCTCCTCCTTCT
CCCTCGGCTGCCCCGATGAGACGGGAATGCAAGGAAAGTTGTTGTGGCCA
CCCTCTTTAGTCTGGTTGTTGGTGGTCTGCCTCTTCCTCTGGCTCGTGGC
ATCAGATCGGCACATTCAGGCGGTCTTCGGCTTTGTCCCCTTGGGACGGG
AATTGTGGGGTGCGGTAGGCCTGTCTGCAGTAGGAGGGACGACGGTTTGG
ATGGAGGTGGGGAAATGTGGAATCTGGTGCGTGGGAAGGCAGAGGAGAGT
GAGGTGGGGGGGTGGGAGGGAGCGAGGGAGCGCGGGAGGGAGGAGGAAGA
GAGGATATGGAACCATGCGGGGGCGGGGAAGTGGTGAAGGAGAGGAAGGA
GAAAGAGGAAGAGGAAGCGTTAATCTTGATGGTGGCGGTGGTAGTAGAAT
AGAAACTCGTGACTTGGAAGAGCAAGCACCGTTGCTGGTGGGGAGATAGG
GAGGAAGAAGTCGCCAGAGGCACAGCGCGGGGGAGAGAGAGGAT
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Coding sequence (CDS) from alignment at scaffold_2:1450620..1451613+

>mRNA_1188 ID=mRNA_1188|Name=jgi.p|Nanoce1779_2|155075|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_2:1450620..1451613+ (Nannochloropsis oceanica)
ATGGCCGGGGCCAGGGCAGCGCTGGCAGGGGGGGAGGAAGTGGAGGAGGA
GGAGGAAGAGAAGGAGGAGGATGAAAGGGGCGTGGGAATTTCCGGTAATG
CTGCAAATTACCTTTCATGCGAGGGTACCAGTAGTGCAGTCTCCTTCCCC
TCCTTCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTGTCGTCCTC
TTCGGCTGCTGCTGGTCGGCACTTTTTGAGCGCAAGTCACCTCTCTCTCG
CCTTTACTGGCATCCTTTCCATTATCACTGCCGTGATTCTTCCTCTTCTC
TACAACGAAATGATCCTCCCACCTTCCCAAGAAGCCGACAGCTTTCCCTC
CCCTTCTCTGCGTCGACAGACTCTGGTCTTTGCCTCTCTCCTCCTCACCC
ACCCCCTTCTGGCCCTACACCTTCACAATCCCTTCCGTCCCTCCTCCTTC
TCCCTCGGCTGCCCCGATGAGACGGGAATGCAAGGAAAGTTGTTGTGGCC
ACCCTCTTTAGTCTGGTTGTTGGTGGTCTGCCTCTTCCTCTGGCTCGTGG
CATCAGATCGGCACATTCAGGCGGTCTTCGGCTTTGTCCCCTTGGGACGG
GAATTGTGGGGTGCGGTAGGCCTGTCTGCAGTAGGAGGGACGACGGTTTG
GATGGAGGTGGGGAAATGTGGAATCTGGTGCGTGGGAAGGCAGAGGAGAG
TGAGGTGGGGGGGTGGGAGGGAGCGAGGGAGCGCGGGAGGGAGGAGGAAG
AGAGGATATGGAACCATGCGGGGGCGGGGAAGTGGTGAAGGAGAGGAAGG
AGAAAGAGGAAGAGGAAGCGTTAATCTTGATGGTGGCGGTGGTAGTAGAA
TAGAAACTCGTGACTTGGAAGAGCAAGCACCGTTGCTGGTGGGGAGATAG
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Synonyms
Publications