jgi.p|Nanoce1779_2|155057, mRNA_1187 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|155057
Unique Name	mRNA_1187
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1762
Alignment location	scaffold_2:1448078..1450126 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	155143
Track	FilteredModels2
ProteinId	155057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1448078..1450126 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|155057	gene_1187	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|155057	mRNA_1187-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1187	CDS_1187	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1448078..1450126+
coding sequence from alignment at scaffold_2:1448078..1450126+

mRNA sequence

>mRNA_1187 ID=mRNA_1187|Name=jgi.p|Nanoce1779_2|155057|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
GGGCGAGGGTGGGATTGAGGGAGGGGGACGGGGTGGGGGCGATGGAGAAG
CTGGCGTTGATGGAGGCGGTGGTCTTAAACAGAGCGGGAACGCTAACAGA
GGCTGTACCTACCTTTCACTCTCTCTCTGTGATGCTCGGCCAGGGTGGGT
CGCGGGCGTGGGGAGGACAGGTGGGAGGACTGGAAGGACTGAAGGCCTTG
ATGAGGCCCCGGTGGCAGACGCGGCGAAGGATGTCTCCTTCCAGCCAAGT
GGAAGGGAAGGGGAGGAAAGAGGGAGGGAAGGAGGGGGAGGACGATAGTG
AGGCAGAGGAGGAGGAGGACAGAAACCGCTTATTGGAGCTGCTGCAGGGC
TGGCTGATGACGTCCAGCTTGGGAGATGACGCCATGCGGAAAGAGCAGCA
CCACCGTCGAAATCGCCGCCTGGATAGGAGAAAAAGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGACTGCTACTCTCATCTTCCCACGACCCGGGAAAGC
ATGGTCCATATCCTTGGAGACATGCTCAATCTCGATAAAGAGTGGGAAGG
ACTTCATCCCTTCGACCAAGCCCTCTTCTCCGCCTTAGCCTCCTCCTCCC
CGGCCTCCCTCCCTCCCTCCTCGCCCCCCCTCACTTCTCCCTCCTCCGCC
TTCTCCCCTGTATTCCACCACGAGCCGCCTCCACCCACGCCGGCGTTGTC
CTTGCAGCCACCCTGTCACACCACCTCCCTCCCGACCAGCACCAGCACCA
CCGCCAGCACCTTTAGCGACAATGTGGACCCCGGGCATGTTCAGCTCACT
CCCCCTTCTGCCCCTCCCGCCCGCACTCCCTCCCTCCCTCCACGCCCCAC
CGACCTGCCTCCGGCGATAGTGTCGATGATTCTAGGAAAAATAAGGGGGG
AGGCGCGCCTGGTCTCATACGCTCCTTTCGATCCGCAGGCGGGGTTCGAG
GCAAGGACGTTCGCATGGAAGGAGGACGGGAGGGAGGGAGAGGGAGAAGG
AGGAGGAGGAGGAGGAGGGAAAGTGGTGTACAAAACATTTTTTCGCGCCA
CCCCGGAGGCATTGCTAGCACGGTGTGAGGAGGTGGGAGGGGAGGGGGGA
AGCAATGAGGACATGAAGAAGGAGGGCGACCTGCAAAATCGGAGGAGCAG
CAGCAGCAGTAGCAGCAGCAGCAGGAGGCGTCTCACCCCCGCCCTCCGTC
ATGATCTTTATCAAGCTCTAGCTGAGCTGGCAAGTCAGGACGGATGTACG
TTGGTAGGAGTGGCGGTGAAGGAGGAGGATGATACATACGAAGAGCGGCT
CGGGAGGGCGAGGGAGGAGCAGCTGCTGGCTCCTTCCCCCCCTCCCCCTG
ACATGCCTTTGCCAGCCGGAGAAAAGAAGGGAAAGGAGGGACAGAAGGGG
GAGAGTAAGGAGGAGACAGAGGATGAAGAAGGGAAGGAGGAAGGGGGACA
GCCGCAGCTTTCTCGCACGGGGAGTTGGGATTACTATCCTGCGGTTCCCC
CCTCTCTCCGTGGAGGGGGAGGGCGGGAGGTCAGTGGAAGAGGGGGCAGA
GGAGTAGGAGACGAGAGGAGAGAGATGTCGGTCATAGGTGGTGTGTGCGC
CGGAGGTGCAAGGCCCCCTTCTCTCGCTGATTTTACATGAGGAAGCAAAG
GTGTCAGTGATCTGCCGGGCGTCAGGTCAGGATCGAGTGCAGGTGGTTCA
GGCGTTAGAAGATGGGGAGAGGGAAGGGAGGGAAGGAGGGAGGGAGGGAG
GGAGAAGGGTGG

protein sequence of jgi.p|Nanoce1779_2|155057

>mRNA_1187-protein ID=mRNA_1187-protein|Name=jgi.p|Nanoce1779_2|155057|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MEKLALMEAVVLNRAGTLTEAVPTFHSLSVMLGQGGSRAWGGQVGGLEGL
KALMRPRWQTRRRMSPSSQVEGKGRKEGGKEGEDDSEAEEEEDRNRLLEL
LQGWLMTSSLGDDAMRKEQHHRRNRRLDRRKRGGGGGGGGGDCYSHLPTT
RESMVHILGDMLNLDKEWEGLHPFDQALFSALASSSPASLPPSSPPLTSP
SSAFSPVFHHEPPPPTPALSLQPPCHTTSLPTSTSTTASTFSDNVDPGHV
QLTPPSAPPARTPSLPPRPTDLPPAIVSMILGKIRGEARLVSYAPFDPQA
GFEARTFAWKEDGREGEGEGGGGGGGKVVYKTFFRATPEALLARCEEVGG
EGGSNEDMKKEGDLQNRRSSSSSSSSSRRRLTPALRHDLYQALAELASQD
GCTLVGVAVKEEDDTYEERLGRAREEQLLAPSPPPPDMPLPAGEKKGKEG
QKGESKEETEDEEGKEEGGQPQLSRTGSWDYYPAVPPSLRGGGGREVSGR
GGRGVGDERREMSVIGGVCAGGARPPSLADFT*

mRNA from alignment at scaffold_2:1448078..1450126+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1187 ID=mRNA_1187|Name=jgi.p|Nanoce1779_2|155057|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at scaffold_2:1448078..1450126+ (Nannochloropsis oceanica)
GGGCGAGGGTGGGATTGAGGGAGGGGGACGGGGTGGGGGCGATGGAGAAG
CTGGCGTTGATGGAGGCGGTGGTCTTAAACAGAGCGGGAACGCTAACAGA
GGCTGTACCTACCTTTCACTCTCTCTCTGTGATGCTCGGCCAGGGTGGGT
CGCGGGCGTGGGGAGGACAGGTGGGAGGACTGGAAGGACTGAAGGCCTTG
ATGAGGCCCCGGTGGCAGACGCGGCGAAGGATGTCTCCTTCCAGCCAAGT
GGAAGGGAAGGGGAGGAAAGAGGGAGGGAAGGAGGGGGAGGACGATAGTG
AGGCAGAGGAGGAGGAGGACAGAAACCGCTTATTGGAGCTGCTGCAGGGC
TGGCTGATGACGTCCAGCTTGGGAGATGACGCCATGCGGAAAGAGCAGCA
CCACCGTCGAAATCGCCGCCTGGATAGGAGAAAAAGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGACTGCTACTCTCATCTTCCCACGACCCGGGAAAGC
ATGGTCCATATCCTTGGAGACATGCTCAATCTCGATAAAGAGTGGGAAGG
ACTTCATCCCTTCGACCAAGCCCTCTTCTCCGCCTTAGCCTCCTCCTCCC
CGGCCTCCCTCCCTCCCTCCTCGCCCCCCCTCACTTCTCCCTCCTCCGCC
TTCTCCCCTGTATTCCACCACGAGCCGCCTCCACCCACGCCGGCGTTGTC
CTTGCAGCCACCCTGTCACACCACCTCCCTCCCGACCAGCACCAGCACCA
CCGCCAGCACCTTTAGCGACAATGTGGACCCCGGGCATGTTCAGCTCACT
CCCCCTTCTGCCCCTCCCGCCCGCACTCCCTCCCTCCCTCCACGCCCCAC
CGACCTGCCTCCGGCGATAGTGTCGATGATTCTAGGAAAAATAAGGGGGG
AGGCGCGCCTGGTCTCATACGCTCCTTTCGATCCGCAGGCGGGGTTCGAG
GCAAGGACGTTCGCATGGAAGGAGGACGGGAGGGAGGGAGAGGGAGAAGG
AGGAGGAGGAGGAGGAGGGAAAGTGGTGTACAAAACATTTTTTCGCGCCA
CCCCGGAGGCATTGCTAGCACGGTGTGAGGAGGTGGGAGGGGAGGGGGGA
AGCAATGAGGACATGAAGAAGGAGGGCGACCTGCAAAATCGGAGGAGCAG
CAGCAGCAGTAGCAGCAGCAGCAGGAGGCGTCTCACCCCCGCCCTCCGTC
ATGATCTTTATCAAGCTCTAGCTGAGCTGGCAAGTCAGGACGGATGTACG
TTGGTAGGAGTGGCGGTGAAGGAGGAGGATGATACATACGAAGAGCGGCT
CGGGAGGGCGAGGGAGGAGCAGCTGCTGGCTCCTTCCCCCCCTCCCCCTG
ACATGCCTTTGCCAGCCGGAGAAAAGAAGGGAAAGGAGGGACAGAAGGGG
GAGAGTAAGGAGGAGACAGAGGATGAAGAAGGGAAGGAGGAAGGGGGACA
GCCGCAGCTTTCTCGCACGGGGAGTTGGGATTACTATCCTGCGGTTCCCC
CCTCTCTCCGTGGAGGGGGAGGGCGGGAGGTCAGTGGAAGAGGGGGCAGA
GGAGTAGGAGACGAGAGGAGAGAGATGTCGGTCATAGGTGGAGTGGGTGC
GAGCTTGGTGAGGGCGACGCCTGAGCGCTTGAAGGGGGCAAGACTTCTGG
GAATGTGCGCCTTTGTCCACCCCCTCGTGGAGGGGGTGAAAGAGGCGGTG
CAGGGTTTGAAAGGGAGCGAGGGAGAGAGGGAGGGGAGGAGGAGAAGGAG
AAGAAGAGGGAGGAGGAGGAAGGTGGTGTTGGTGACGGGAGAGGGGAAGG
AAGCGGCGGAGGCTCTGGGGAGGAAGGTGGGATTGGTGGAGGAGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGTGGTGTGTGCGCCGGAGGTGCAAGG
CCCCCTTCTCTCGCTGATTTTACATGAGGAAGCAAAGGTGTCAGTGATCT
GCCGGGCGTCAGGTCAGGATCGAGTGCAGGTGGTTCAGGCGTTAGAAGAT
GGGGAGAGGGAAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGAAGGGTGG

Coding sequence (CDS) from alignment at scaffold_2:1448078..1450126+

>mRNA_1187 ID=mRNA_1187|Name=jgi.p|Nanoce1779_2|155057|organism=Nannochloropsis oceanica|type=CDS|length=3198bp|location=Sequence derived from alignment at scaffold_2:1448078..1450126+ (Nannochloropsis oceanica)
ATGGAGAAGCTGGCGTTGATGGAGGCGGTGGTCTTAAACAGAGCGGGAAC
GCTAACAGAGGCTGTACCTACCTTTCACTCTCTCTCTGTGATGCTCGGCC
AGGGTGGGTCGCGGGCGTGGGGAGGACAGGTGGGAGGACTGGAAGGACTG
AAGGCCTTGATGAGGCCCCGGTGGCAGACGCGGCGAAGGATGTCTCCTTC
CAGCCAAGTGGAAGGGAAGGGGAGGAAAGAGGGAGGGAAGGAGGGGGAGG
ACGATAGTGAGGCAGAGGAGGAGGAGGACAGAAACCGCTTATTGGAGCTG
CTGCAGGGCTGGCTGATGACGTCCAGCTTGGGAGATGACGCCATGCGGAA
AGAGCAGCACCACCGTCGAAATCGCCGCCTGGATAGGAGAAAAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGACTGCTACTCTCATCTTCCCACGACC
CGGGAAAGCATGGTCCATATCCTTGGAGACATGCTCAATCTCGATAAAGA
GTGGGAAGGACTTCATCCCTTCGACCAAGCCCTCTTCTCCGCCTTAGCCT
CCTCCTCCCCGGCCTCCCTCCCTCCCTCCTCGCCCCCCCTCACTTCTCCC
TCCTCCGCCTTCTCCCCTGTATTCCACCACGAGCCGCCTCCACCCACGCC
GGCGTTGTCCTTGCAGCCACCCTGTCACACCACCTCCCTCCCGACCAGCA
CCAGCACCACCGCCAGCACCTTTAGCGACAATGTGGACCCCGGGCATGTT
CAGCTCACTCCCCCTTCTGCCCCTCCCGCCCGCACTCCCTCCCTCCCTCC
ACGCCCCACCGACCTGCCTCCGGCGATAGTGTCGATGATTCTAGGAAAAA
TAAGGGGGGAGGCGCGCCTGGTCTCATACGCTCCTTTCGATCCGCAGGCG
GGGTTCGAGGCAAGGACGTTCGCATGGAAGGAGGACGGGAGGGAGGGAGA
GGGAGAAGGAGGAGGAGGAGGAGGAGGGAAAGTGGTGTACAAAACATTTT
TTCGCGCCACCCCGGAGGCATTGCTAGCACGGTGTGAGGAGGTGGGAGGG
GAGGGGGGAAGCAATGAGGACATGAAGAAGGAGGGCGACCTGCAAAATCG
GAGGAGCAGCAGCAGCAGTAGCAGCAGCAGCAGGAGGCGTCTCACCCCCG
CCCTCCGTCATGATCTTTATCAAGCTCTAGCTGAGCTGGCAAGTCAGGAC
GGATGTACGTTGGTAGGAGTGGCGGTGAAGGAGGAGGATGATACATACGA
AGAGCGGCTCGGGAGGGCGAGGGAGGAGCAGCTGCTGGCTCCTTCCCCCC
CTCCCCCTGACATGCCTTTGCCAGCCGGAGAAAAGAAGGGAAAGGAGGGA
CAGAAGGGGGAGAGTAAGGAGGAGACAGAGGATGAAGAAGGGAAGGAGGA
AGGGGGACAGCCGCAGCTTTCTCGCACGGGGAGTTGGGATTACTATCCTG
CGGTTCCCCCCTCTCTCCGTGGAGGGGGAGGGCGGGAGGTCAGTGGAAGA
GGGGGCAGAGGAGTAGGAGACGAGAGGAGAGAGATGTCGGTCATAGGTGG
TGTGTGCGCCGGAGGTGCAAGGCCCCCTTCTCTCGCTGATTTTACATGAA
TGGAGAAGCTGGCGTTGATGGAGGCGGTGGTCTTAAACAGAGCGGGAACG
CTAACAGAGGCTGTACCTACCTTTCACTCTCTCTCTGTGATGCTCGGCCA
GGGTGGGTCGCGGGCGTGGGGAGGACAGGTGGGAGGACTGGAAGGACTGA
AGGCCTTGATGAGGCCCCGGTGGCAGACGCGGCGAAGGATGTCTCCTTCC
AGCCAAGTGGAAGGGAAGGGGAGGAAAGAGGGAGGGAAGGAGGGGGAGGA
CGATAGTGAGGCAGAGGAGGAGGAGGACAGAAACCGCTTATTGGAGCTGC
TGCAGGGCTGGCTGATGACGTCCAGCTTGGGAGATGACGCCATGCGGAAA
GAGCAGCACCACCGTCGAAATCGCCGCCTGGATAGGAGAAAAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGACTGCTACTCTCATCTTCCCACGACCC
GGGAAAGCATGGTCCATATCCTTGGAGACATGCTCAATCTCGATAAAGAG
TGGGAAGGACTTCATCCCTTCGACCAAGCCCTCTTCTCCGCCTTAGCCTC
CTCCTCCCCGGCCTCCCTCCCTCCCTCCTCGCCCCCCCTCACTTCTCCCT
CCTCCGCCTTCTCCCCTGTATTCCACCACGAGCCGCCTCCACCCACGCCG
GCGTTGTCCTTGCAGCCACCCTGTCACACCACCTCCCTCCCGACCAGCAC
CAGCACCACCGCCAGCACCTTTAGCGACAATGTGGACCCCGGGCATGTTC
AGCTCACTCCCCCTTCTGCCCCTCCCGCCCGCACTCCCTCCCTCCCTCCA
CGCCCCACCGACCTGCCTCCGGCGATAGTGTCGATGATTCTAGGAAAAAT
AAGGGGGGAGGCGCGCCTGGTCTCATACGCTCCTTTCGATCCGCAGGCGG
GGTTCGAGGCAAGGACGTTCGCATGGAAGGAGGACGGGAGGGAGGGAGAG
GGAGAAGGAGGAGGAGGAGGAGGAGGGAAAGTGGTGTACAAAACATTTTT
TCGCGCCACCCCGGAGGCATTGCTAGCACGGTGTGAGGAGGTGGGAGGGG
AGGGGGGAAGCAATGAGGACATGAAGAAGGAGGGCGACCTGCAAAATCGG
AGGAGCAGCAGCAGCAGTAGCAGCAGCAGCAGGAGGCGTCTCACCCCCGC
CCTCCGTCATGATCTTTATCAAGCTCTAGCTGAGCTGGCAAGTCAGGACG
GATGTACGTTGGTAGGAGTGGCGGTGAAGGAGGAGGATGATACATACGAA
GAGCGGCTCGGGAGGGCGAGGGAGGAGCAGCTGCTGGCTCCTTCCCCCCC
TCCCCCTGACATGCCTTTGCCAGCCGGAGAAAAGAAGGGAAAGGAGGGAC
AGAAGGGGGAGAGTAAGGAGGAGACAGAGGATGAAGAAGGGAAGGAGGAA
GGGGGACAGCCGCAGCTTTCTCGCACGGGGAGTTGGGATTACTATCCTGC
GGTTCCCCCCTCTCTCCGTGGAGGGGGAGGGCGGGAGGTCAGTGGAAGAG
GGGGCAGAGGAGTAGGAGACGAGAGGAGAGAGATGTCGGTCATAGGTGGT
GTGTGCGCCGGAGGTGCAAGGCCCCCTTCTCTCGCTGATTTTACATGA

Synonyms

Publications