jgi.p|Nanoce1779_2|575658, mRNA_1185 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575658
Unique NamemRNA_1185
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1002
Alignment locationscaffold_2:1443858..1445074 +

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Properties
Property NameValue
TranscriptId575744
TrackFilteredModels2
ProteinId575658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1443858..1445074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575658gene_1185Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575658mRNA_1185-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1185CDS_1185Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Nanoce1779_2|575658|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
CAGGCACACCCAGGCTCCTCACGCACACCCCCCGCACGCATTTCAAATGG
CAACCTACCATTCGCTGGTGATCATGGCGTCTGCCTGTCTCCTCGTCTTC
TTGGGTTCGACGATTGAGGCCACGAGCACTACTCATCCGTACGCCTCCTT
TATTCATTTGGCCAGTGTCGGGGCCTGGTTTGGAATCTCGCTCTGGGTAA
CGTTTGTCGCTGGCGTTTTGCTGTACAGGTATCTGCCCCGGCACCTCTTT
GGAGAAGTGCAGAGCAAGATCTTTCCCTATTTCTTCGGCATGTCCTTGGT
CTTCACTTCTCTTGCCCTGGCCTCGTGGGCACATTTGGAAGGGGTCACCG
ACCTCTTGGCCACCGCCAAGAATGGGGGCGAAGACGCGACCGTTCTTTTT
GTCCTAGGCGGCGCCGCCATGCTTTCTGCGCTGCAGCTCGTAGTACTGGG
CCCGTCGGTGACCAAGGCCATGAATGCGCGTAACAAACTGGAGAAGGAAG
AGGGTTTCGCCGACACGACCAGCAAGGAAGGAAGGAGCCCTCAGCTGCTT
GCCTTGGGCAAGAAATTTGCACGCGTCCACGGGATGTCGTCAACCGCTAA
TCTGCTTATTTTCCTGGCAGCAATTATGCATCTCTATGTCCTGTCGTCCA
AGCATGTCACGTTTGCGATTATGGCGCCAGCAGTCAAGGCCAGCTTTTGG
GGATGGTAATGCGGGGTGTGGTGTGGAGATATGGGAATCAAGAGACGGGC
TGTGCAGCGGGAGCTGGTGCGAATTTGCGTGTGAACATTCTGCATGTTTG
TGAATGCACATGTGAGAAAACGCAACCAAGGGAGTGAATAATGTGGTTTA
ATGAATGTCAAAAAGAAAAACAACAAGCAAGCACATGAGCTTAAGCATGA
ATGTGGTGAACGGCTGGGCACACAAGGGCAAGACAAGAAAGATAATCGAA
GAAGATTAAGCGAAAAGCCCAGAGATGAATTAAGAACATAACATTTTTAT
TA
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protein sequence of jgi.p|Nanoce1779_2|575658

>mRNA_1185-protein ID=mRNA_1185-protein|Name=jgi.p|Nanoce1779_2|575658|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MATYHSLVIMASACLLVFLGSTIEATSTTHPYASFIHLASVGAWFGISLW
VTFVAGVLLYRYLPRHLFGEVQSKIFPYFFGMSLVFTSLALASWAHLEGV
TDLLATAKNGGEDATVLFVLGGAAMLSALQLVVLGPSVTKAMNARNKLEK
EEGFADTTSKEGRSPQLLALGKKFARVHGMSSTANLLIFLAAIMHLYVLS
SKHVTFAIMAPAVKASFWGW*
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mRNA from alignment at scaffold_2:1443858..1445074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Nanoce1779_2|575658|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at scaffold_2:1443858..1445074+ (Nannochloropsis oceanica)
CAGGCACACCCAGGCTCCTCACGCACACCCCCCGCACGCATTTCAAATGG
CAACCTACCATTCGCTGGTGATCATGGCGTCTGCCTGTCTCCTCGTCTTC
TTGGGTTCGACGATTGAGGCCACGAGCACTACTCATCCGTACGCCTCCTT
TATTCATTTGGCCAGTGTCGGGGCCTGGTTTGGAATCTCGCTCTGGGTAA
CGTTTGTCGCTGGCGTTTTGCTGTACAGGTATCTGCCCCGGCACCTCTTT
GGAGAAGTGCAGAGCAAGATCTTTCCCTATTTCTTCGGCATGTCCTTGGT
CTTCACTTCTCTTGCCCTGGCCTCGTGGGCACATTTGGAAGGGGTCACCG
ACCTCTTGGCCACCGCCAAGAATGGGGGCGAAGACGCGACCGTTCTTTTT
GTCCTAGGCGGCGCCGCCATGCTTTCTGCGCTGCAGCTCGTAGTACTGGG
CCCGTCGGTGACCAAGGCCATGAATGCGCGTAACAAACTGGAGAAGGTAC
ATACCCATCTACATGTAAAGGAGTTATATTGATTTTTGGGCCATCATCAG
ATGGTATATGGTGCGCTCGATTCTCCACGCTAAAAATTAGGAGGCGTATG
GACATGGCTGTCATTACCATAGACAAGATTGGATTACTAACACTCCTATT
GGTACTCACGCACGAATCTCCCTTCTCACTCCCTTAATCCCTTTTCACGT
CTCTACCACAGGAAGAGGGTTTCGCCGACACGACCAGCAAGGAAGGAAGG
AGCCCTCAGCTGCTTGCCTTGGGCAAGAAATTTGCACGCGTCCACGGGAT
GTCGTCAACCGCTAATCTGCTTATTTTCCTGGCAGCAATTATGCATCTCT
ATGTCCTGTCGTCCAAGCATGTCACGTTTGCGATTATGGCGCCAGCAGTC
AAGGCCAGCTTTTGGGGATGGTAATGCGGGGTGTGGTGTGGAGATATGGG
AATCAAGAGACGGGCTGTGCAGCGGGAGCTGGTGCGAATTTGCGTGTGAA
CATTCTGCATGTTTGTGAATGCACATGTGAGAAAACGCAACCAAGGGAGT
GAATAATGTGGTTTAATGAATGTCAAAAAGAAAAACAACAAGCAAGCACA
TGAGCTTAAGCATGAATGTGGTGAACGGCTGGGCACACAAGGGCAAGACA
AGAAAGATAATCGAAGAAGATTAAGCGAAAAGCCCAGAGATGAATTAAGA
ACATAACATTTTTATTA
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Coding sequence (CDS) from alignment at scaffold_2:1443858..1445074+

>mRNA_1185 ID=mRNA_1185|Name=jgi.p|Nanoce1779_2|575658|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_2:1443858..1445074+ (Nannochloropsis oceanica)
ATGGCAACCTACCATTCGCTGGTGATCATGGCGTCTGCCTGTCTCCTCGT
CTTCTTGGGTTCGACGATTGAGGCCACGAGCACTACTCATCCGTACGCCT
CCTTTATTCATTTGGCCAGTGTCGGGGCCTGGTTTGGAATCTCGCTCTGG
GTAACGTTTGTCGCTGGCGTTTTGCTGTACAGGTATCTGCCCCGGCACCT
CTTTGGAGAAGTGCAGAGCAAGATCTTTCCCTATTTCTTCGGCATGTCCT
TGGTCTTCACTTCTCTTGCCCTGGCCTCGTGGGCACATTTGGAAGGGGTC
ACCGACCTCTTGGCCACCGCCAAGAATGGGGGCGAAGACGCGACCGTTCT
TTTTGTCCTAGGCGGCGCCGCCATGCTTTCTGCGCTGCAGCTCGTAGTAC
TGGGCCCGTCGGTGACCAAGGCCATGAATGCGCGTAACAAACTGGAGAAG
GAAGAGGGTTTCGCCGACACGACCAGCAAGGAAGGAAGGAGCCCTCAGCT
GCTTGCCTTGGGCAAGAAATTTGCACGCGTCCACGGGATGTCGTCAACCG
CTAATCTGCTTATTTTCCTGGCAGCAATTATGCATCTCTATGTCCTGTCG
TCCAAGCATGTCACGTTTGCGATTATGGCGCCAGCAGTCAAGGCCAGCTT
TTGGGGATGGTAAATGGCAACCTACCATTCGCTGGTGATCATGGCGTCTG
CCTGTCTCCTCGTCTTCTTGGGTTCGACGATTGAGGCCACGAGCACTACT
CATCCGTACGCCTCCTTTATTCATTTGGCCAGTGTCGGGGCCTGGTTTGG
AATCTCGCTCTGGGTAACGTTTGTCGCTGGCGTTTTGCTGTACAGGTATC
TGCCCCGGCACCTCTTTGGAGAAGTGCAGAGCAAGATCTTTCCCTATTTC
TTCGGCATGTCCTTGGTCTTCACTTCTCTTGCCCTGGCCTCGTGGGCACA
TTTGGAAGGGGTCACCGACCTCTTGGCCACCGCCAAGAATGGGGGCGAAG
ACGCGACCGTTCTTTTTGTCCTAGGCGGCGCCGCCATGCTTTCTGCGCTG
CAGCTCGTAGTACTGGGCCCGTCGGTGACCAAGGCCATGAATGCGCGTAA
CAAACTGGAGAAGGAAGAGGGTTTCGCCGACACGACCAGCAAGGAAGGAA
GGAGCCCTCAGCTGCTTGCCTTGGGCAAGAAATTTGCACGCGTCCACGGG
ATGTCGTCAACCGCTAATCTGCTTATTTTCCTGGCAGCAATTATGCATCT
CTATGTCCTGTCGTCCAAGCATGTCACGTTTGCGATTATGGCGCCAGCAG
TCAAGGCCAGCTTTTGGGGATGGTAA
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Synonyms
Publications