jgi.p|Nanoce1779_2|575654, mRNA_1184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575654
Unique NamemRNA_1184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length740
Alignment locationscaffold_2:1441798..1443309 -

Link to JBrowse

Properties
Property NameValue
TranscriptId575740
TrackFilteredModels2
ProteinId575654
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1441798..1443309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575654gene_1184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575654mRNA_1184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1184CDS_1184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1184 ID=mRNA_1184|Name=jgi.p|Nanoce1779_2|575654|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
CAGGCAAATTTATCCTCCCGCATCCCCGCCACCCGCCTCAACAACCACTC
ATATACCATGGGTCTTTTCGACGACAAGGGTCGCCTTCTCCAAATCACAT
GGTATGCCTGCATGGCAACCTCGATCGCGTACGTAATTTCAGCCCTGGTC
GTTGCGTCCCGCCTCTCGAAGAGCGAGACCCCTAGTGCGACGGACCCTCA
TGCGTTTGCGGCCATTTGGTCCATGATCCTGTTGGTGTGCATCCTCGTCG
GCGGCACGGTCGTCTTCAAGAGGATCCAGACCCCCATCGCCACGGGTGTA
CTGTTGGGTTGCACGGCCATGTTCTCGCAGATTCAGCTGCTTCTCTTCAC
CATCTTCGAGGCTCGCAGCCGCCAAGCCGAGTCGGCGAGCGAGAAGAGCG
CAGACGGGGCCATCGCGACCTTTGCTTTTTTCCTCTTCCTCATTTTTGGC
ATCTTTTCCCTCTTCCTTTTTATGTGGAGGCAGTACCTACCGACTAGCTC
GAGCCAGTCATCCATGGACAGCTACGCCTAAACGGAAGCAGAATAATGTG
AGTAATAATATGTAATACGAGTAAAGTATACAGCAGCATCCACTCGTGAA
AGGAAGCAGAAAGCATGCGCTGATTCAGACGAGCTGCATGGGGATGGATG
ACTTGTGTGGGGTGTTGGTGCGAGGAAGGGCAAGTGGGAAAAAGAGAGAA
AGGAGGGTGCCATGGGAGGGGGAACTAAGATCCGCAGCGA
back to top

protein sequence of jgi.p|Nanoce1779_2|575654

>mRNA_1184-protein ID=mRNA_1184-protein|Name=jgi.p|Nanoce1779_2|575654|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGLFDDKGRLLQITWYACMATSIAYVISALVVASRLSKSETPSATDPHAF
AAIWSMILLVCILVGGTVVFKRIQTPIATGVLLGCTAMFSQIQLLLFTIF
EARSRQAESASEKSADGAIATFAFFLFLIFGIFSLFLFMWRQYLPTSSSQ
SSMDSYA*
back to top

mRNA from alignment at scaffold_2:1441798..1443309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1184 ID=mRNA_1184|Name=jgi.p|Nanoce1779_2|575654|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_2:1441798..1443309- (Nannochloropsis oceanica)
CAGGCAAATTTATCCTCCCGCATCCCCGCCACCCGCCTCAACAACCACTC
ATATACCATGGGTCTTTTCGACGACAAGGGTCGCCTTCTCCAAATCACAT
GGTATGCCTGCATGGCAACCTCGATCGCGGTAAGTTATTTCTAGCAATAT
CGAGATTCAGACACGAGAGTATGAAATGTGAAATGTCTTGGTAGAATTTT
GTGAAGTGTCGGGCGAGGATCGCTCGCCGTTTACCGGTCAAGCCGTAGGA
GGATGAACAGGCGGGATTGTCAGCCTACCCGTTCATTCTCCCCACTAATT
GCGGAAAGGATGAGAATGCGTGATGCAGGCACATATTGACTACTCATAAT
GTCTCTATTTCTCATCCCTTCCATAACAGTACGTAATTTCAGCCCTGGTC
GTTGCGTCCCGCCTCTCGAAGAGCGAGACCCCTAGTGCGACGGACCCTCA
TGCGTTTGCGGCCATTTGGTCCATGATCCTGTTGGTGTGCATCCTCGTCG
GCGGCACGGTCGTCTTCAAGAGGTATGCAAGGTAGCATTTGCCACGGGTA
GAGAGGGGCAAAGGACGACGGGGATTGTCTTGAGGCTGATGACGATGATA
GCGCTCGTGCCATGGCACGGCAGCTTCCCCGGTCTTTCATTCCATCGCGT
GTGCACATCCATCCACCACCACACCCTTCCCCGTCTCTTGGCTTTGACTC
TTTTCCCTGTTTTCCAGGATCCAGACCCCCATCGCCACGGGTGTACTGTT
GGGTTGCACGGCCATGTTCTCGCAGATTCAGCTGCTTCTCTTCACCATCT
TCGAGGCTCGCAGGTAGAGAGGGCGGGGGGGAAGGACGAGGAGGTGGAAA
AACGAGATGTGCCGGGATACTTCTTTGCATGGACGGATCCTCGCCGCCCT
CTTCTTTTCCCAAAATGTGTTGGTCTTTCAACGAGTGTGCTATTTTTCTC
CATCCTCGTTTCATGTCATATCTCCCTCCTCCCCCTCCTCCCCCTCCTCC
CCGCTGTAGCCGCCAAGCCGAGTCGGCGAGCGAGAAGAGCGCAGACGGGG
CCATCGCGACCTTTGCTTTTTTCCTCTTCCTCATTTTTGGCATCTTTTCC
CTCTTCCTTTTTATGTGGAGGCAGTACCTACCGGTGCGTGCTGCTGCAGG
GAGGGAGGGAGAGAGGGAGGGATGTGGCCTACAGATTCCGACATGTAGAT
TTTTTCGTCGCTCATCCTTCTCTTCGTTCTTTTTCCCTCCTCCCTTCTTC
CTCATTGATTGCAGACTAGCTCGAGCCAGTCATCCATGGACAGCTACGCC
TAAACGGAAGCAGAATAATGTGAGTAATAATATGTAATACGAGTAAAGTA
TACAGCAGCATCCACTCGTGAAAGGAAGCAGAAAGCATGCGCTGATTCAG
ACGAGCTGCATGGGGATGGATGACTTGTGTGGGGTGTTGGTGCGAGGAAG
GGCAAGTGGGAAAAAGAGAGAAAGGAGGGTGCCATGGGAGGGGGAACTAA
GATCCGCAGCGA
back to top

Coding sequence (CDS) from alignment at scaffold_2:1441798..1443309-

>mRNA_1184 ID=mRNA_1184|Name=jgi.p|Nanoce1779_2|575654|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_2:1441798..1443309- (Nannochloropsis oceanica)
ACTAGCTCGAGCCAGTCATCCATGGACAGCTACGCCTAACCGCCAAGCCG
AGTCGGCGAGCGAGAAGAGCGCAGACGGGGCCATCGCGACCTTTGCTTTT
TTCCTCTTCCTCATTTTTGGCATCTTTTCCCTCTTCCTTTTTATGTGGAG
GCAGTACCTACCGGATCCAGACCCCCATCGCCACGGGTGTACTGTTGGGT
TGCACGGCCATGTTCTCGCAGATTCAGCTGCTTCTCTTCACCATCTTCGA
GGCTCGCAGTACGTAATTTCAGCCCTGGTCGTTGCGTCCCGCCTCTCGAA
GAGCGAGACCCCTAGTGCGACGGACCCTCATGCGTTTGCGGCCATTTGGT
CCATGATCCTGTTGGTGTGCATCCTCGTCGGCGGCACGGTCGTCTTCAAG
AGATGGGTCTTTTCGACGACAAGGGTCGCCTTCTCCAAATCACATGGTAT
GCCTGCATGGCAACCTCGATCGCGACTAGCTCGAGCCAGTCATCCATGGA
CAGCTACGCCTAACCGCCAAGCCGAGTCGGCGAGCGAGAAGAGCGCAGAC
GGGGCCATCGCGACCTTTGCTTTTTTCCTCTTCCTCATTTTTGGCATCTT
TTCCCTCTTCCTTTTTATGTGGAGGCAGTACCTACCGGATCCAGACCCCC
ATCGCCACGGGTGTACTGTTGGGTTGCACGGCCATGTTCTCGCAGATTCA
GCTGCTTCTCTTCACCATCTTCGAGGCTCGCAGTACGTAATTTCAGCCCT
GGTCGTTGCGTCCCGCCTCTCGAAGAGCGAGACCCCTAGTGCGACGGACC
CTCATGCGTTTGCGGCCATTTGGTCCATGATCCTGTTGGTGTGCATCCTC
GTCGGCGGCACGGTCGTCTTCAAGAGATGGGTCTTTTCGACGACAAGGGT
CGCCTTCTCCAAATCACATGGTATGCCTGCATGGCAACCTCGATCGCGAC
TAGCTCGAGCCAGTCATCCATGGACAGCTACGCCTAACCGCCAAGCCGAG
TCGGCGAGCGAGAAGAGCGCAGACGGGGCCATCGCGACCTTTGCTTTTTT
CCTCTTCCTCATTTTTGGCATCTTTTCCCTCTTCCTTTTTATGTGGAGGC
AGTACCTACCGGATCCAGACCCCCATCGCCACGGGTGTACTGTTGGGTTG
CACGGCCATGTTCTCGCAGATTCAGCTGCTTCTCTTCACCATCTTCGAGG
CTCGCAGTACGTAATTTCAGCCCTGGTCGTTGCGTCCCGCCTCTCGAAGA
GCGAGACCCCTAGTGCGACGGACCCTCATGCGTTTGCGGCCATTTGGTCC
ATGATCCTGTTGGTGTGCATCCTCGTCGGCGGCACGGTCGTCTTCAAGAG
ATGGGTCTTTTCGACGACAAGGGTCGCCTTCTCCAAATCACATGGTATGC
CTGCATGGCAACCTCGATCGCGACTAGCTCGAGCCAGTCATCCATGGACA
GCTACGCCTAACCGCCAAGCCGAGTCGGCGAGCGAGAAGAGCGCAGACGG
GGCCATCGCGACCTTTGCTTTTTTCCTCTTCCTCATTTTTGGCATCTTTT
CCCTCTTCCTTTTTATGTGGAGGCAGTACCTACCGGATCCAGACCCCCAT
CGCCACGGGTGTACTGTTGGGTTGCACGGCCATGTTCTCGCAGATTCAGC
TGCTTCTCTTCACCATCTTCGAGGCTCGCAGTACGTAATTTCAGCCCTGG
TCGTTGCGTCCCGCCTCTCGAAGAGCGAGACCCCTAGTGCGACGGACCCT
CATGCGTTTGCGGCCATTTGGTCCATGATCCTGTTGGTGTGCATCCTCGT
CGGCGGCACGGTCGTCTTCAAGAGATGGGTCTTTTCGACGACAAGGGTCG
CCTTCTCCAAATCACATGGTATGCCTGCATGGCAACCTCGATCGCGACTA
GCTCGAGCCAGTCATCCATGGACAGCTACGCCTAACCGCCAAGCCGAGTC
GGCGAGCGAGAAGAGCGCAGACGGGGCCATCGCGACCTTTGCTTTTTTCC
TCTTCCTCATTTTTGGCATCTTTTCCCTCTTCCTTTTTATGTGGAGGCAG
TACCTACCGGATCCAGACCCCCATCGCCACGGGTGTACTGTTGGGTTGCA
CGGCCATGTTCTCGCAGATTCAGCTGCTTCTCTTCACCATCTTCGAGGCT
CGCAGTACGTAATTTCAGCCCTGGTCGTTGCGTCCCGCCTCTCGAAGAGC
GAGACCCCTAGTGCGACGGACCCTCATGCGTTTGCGGCCATTTGGTCCAT
GATCCTGTTGGTGTGCATCCTCGTCGGCGGCACGGTCGTCTTCAAGAGAT
GGGTCTTTTCGACGACAAGGGTCGCCTTCTCCAAATCACATGGTATGCCT
GCATGGCAACCTCGATCGCG
back to top
Synonyms
Publications