jgi.p|Nanoce1779_2|575644, mRNA_1181 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575644
Unique NamemRNA_1181
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1505
Alignment locationscaffold_2:1433427..1435181 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575730
TrackFilteredModels2
ProteinId575644
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1433427..1435181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575644gene_1181Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575644mRNA_1181-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1181CDS_1181Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1181 ID=mRNA_1181|Name=jgi.p|Nanoce1779_2|575644|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
ATACTTCTTCTCCGGGAACCCATGTAAGAGATATGGATAGAGGAGGGAGA
ATGGCATGGATGAAGAGGAAATTGTATGCCTTCTAGCCAATATACAGAGG
CACTTGTCTGTCATTCTCTTTCTCACACGCCCCTCCCTTCCCTCCCCACC
GATCTCCCCGTCATACCGCGCTCCCGATTCCCCTCCCGCCCTTTCCCACA
CGGACTCAGACGTGTACGCACTGTACGACAACCTTCTGTCCCTCCTTCAA
ACCCGAGGACAAACCAAAGGTCATCGCATCTCCACCCTCCTCGTCACCTA
CCCCCCACTCCCCGACGCCCTGCTTGCCGATCCCCAAGCCGCCTTTGCAC
ACATCGCCAGCGACGTACAGCAGCAAATCTGGACCTACGAACGCGCGCGT
CCCTCTCCCTCACCTTCTCACACCCTCTTGGTCGGGCACTCTTTCGGGGC
CTACATCGCCAACCTCCTCCTCCCCCACCTGACGCCGTCCCCCGCCGCCT
CCATCTACCTCTTCCCCTTCCTCTCCGAACCGACCTGGCGAGGCAAACTT
CAACTTGCGCTCGCGGATCAGGCCTACCGCCAAACGCCCCTCCTAGGCCG
GGCCCTTCATGGGATGACCACTCGGCTCTTCGATTGGCTCCTTTACTTCG
TTTCCTCCCCAGCCAAGCGGCGTAACCTCCCCCCACGCACGGACCCAGCC
ACGCTCCACGCCATCTTGCGGGTCGCGGCGTGTGAGCGGGCGGAAATTGG
GGGAAAAGGGCCGGACTTATCGCATGTCGACATGCACGGGGAGAAGCACG
GGAGCAAGCCGTATTTGGTGTACACGGAGGGGGACGAGTGGAGCCCGAGA
TACGTCTGGGACGCCTGGCCGGAGGAAAGGAGGGTGGATATGAGTCACAT
CCCTCATGCCTTCCCGTGCCAGGAGGCGCACGACGAGGAGGTGTGTGAAA
CCGTGCTGGACATCGTGGGGAGGGTGGTGAGGGGGGAGGAGAGTGAAGGC
GGCGTGAAGGAGAGGGCCAAGTTGTAGATTTGTTGAGGAGAGATAGGGAG
GAGGGGGGAGGAGGGTAAAGGACTGAGGCAGATGGAGATGGAACAGAGAC
TGGAAAGGGGGAAGAGGAGGAAAAGAAACATAGGGTTTGACTGGACAGAG
TGGATGGACAGGCAGCCGAGACAAGTCTCCCCTACTCCATCTCCTTCTTC
TGCTTCCTCTTGTCTTTCTCATTTCGTCTACTTTTTTTCATTTCTTCGAC
TTCTGCGTCTTTTGCCGTCCTTCTTCCTTTGTTCGTTTGTTCCTACAAGA
ATTTACATCCCACTTGTTCCCTCGCTTCTCCTCTCTCTCTTGCTCCCTCC
CTTTACAACCAAGGTCCCTCCCCCCTCTACCTTTGAAGCATAGGAGGATG
GAGGGGAGGGAGGGAGGCAGGCAGAGAGGGAGGGAGGGAGGGAGGGAAGG
CATTCTGACCGTGTTTCACTATTTTTTGCACCTGTGGAAGTCAAAGCCAC
CGCAG
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protein sequence of jgi.p|Nanoce1779_2|575644

>mRNA_1181-protein ID=mRNA_1181-protein|Name=jgi.p|Nanoce1779_2|575644|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MDEEEIVCLLANIQRHLSVILFLTRPSLPSPPISPSYRAPDSPPALSHTD
SDVYALYDNLLSLLQTRGQTKGHRISTLLVTYPPLPDALLADPQAAFAHI
ASDVQQQIWTYERARPSPSPSHTLLVGHSFGAYIANLLLPHLTPSPAASI
YLFPFLSEPTWRGKLQLALADQAYRQTPLLGRALHGMTTRLFDWLLYFVS
SPAKRRNLPPRTDPATLHAILRVAACERAEIGGKGPDLSHVDMHGEKHGS
KPYLVYTEGDEWSPRYVWDAWPEERRVDMSHIPHAFPCQEAHDEEVCETV
LDIVGRVVRGEESEGGVKERAKL*
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mRNA from alignment at scaffold_2:1433427..1435181+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1181 ID=mRNA_1181|Name=jgi.p|Nanoce1779_2|575644|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at scaffold_2:1433427..1435181+ (Nannochloropsis oceanica)
ATACTTCTTCTCCGGGAACCCATGTAAGAGATATGGATAGAGGAGGGAGA
ATGGCATGGATGAAGAGGAAATTGTATGCCTTCTAGCCAATATACAGAGG
CACTTGTCTGTCATTCTCTTTCTCACACGCCCCTCCCTTCCCTCCCCACC
GATCTCCCCGTCATACCGCGCTCCCGATTCCCCTCCCGCCCTTTCCCACA
CGGACTCAGACGTGTACGCACTGTACGACAACCTTCTGTCCCTCCTTCAA
ACCCGAGGACAAACCAAAGGTCATCGCATCTCCACCCTCCTCGTCACCTA
CCCCCCACTCCCCGACGCCCTGCTTGCCGATCCCCAAGCCGCCTTTGCAC
ACATCGCCAGCGACGTACAGCAGCAAATCTGGACCTACGAACGCGCGCGT
CCCTCTCCCTCACCTTCTCACACCCTCTTGGTCGGGCACTCTTTCGGGGC
CTACATCGCCAACCTCCTCCTCCCCCACCTGACGCCGTCCCCCGCCGCCT
CCATCTACCTCTTCCCCTTCCTCTCCGAACCGACCTGGCGAGGCAAACTT
CAACTTGCGCTCGCGGATCAGGCCTACCGCCAAACGCCCCTCCTAGGCCG
GGCCCTTCATGGGATGACCACTCGGCTCTTCGATTGGCTCCTTTACTTCG
TTTCCTCCCCAGCCAAGCGGCGTAACCTCCCCCCACGCACGGACCCAGCC
ACGCTCCACGCCATCTTGCGGGTCGCGGCGTGTGAGCGGGCGGAAATTGG
GGGAAAAGGGCCGGACTTATCGCATGTCGACATGCACGGGGAGAAGCACG
GGAGCAAGCCGTATTTGGTGTACACGGAGGGGGACGAGTGGAGGTGGGTG
TGGGAGGGAGGGAGGAAGGGATGGAGGGAGGGAGGGAGGGAGGAAGGGGT
ATGTAGACCCGGGTCAATGAGGCGTAGTTCTGCAGGAGACAGGTGAACAG
TCTTTCCTTCAACATCTTCCCCCCGTGTCTTATTGCCTCCCGCCGGGGCA
GGTAACATCGCTCGTTCTCCTTGCATTGCCTTGTCCTCCATGCCACACTC
ACTCACCTATATTACCGGCTGACCGCCCCCCCCCCCCCCACAGCCCGAGA
TACGTCTGGGACGCCTGGCCGGAGGAAAGGAGGGTGGATATGAGTCACAT
CCCTCATGCCTTCCCGTGCCAGGAGGCGCACGACGAGGAGGTGTGTGAAA
CCGTGCTGGACATCGTGGGGAGGGTGGTGAGGGGGGAGGAGAGTGAAGGC
GGCGTGAAGGAGAGGGCCAAGTTGTAGATTTGTTGAGGAGAGATAGGGAG
GAGGGGGGAGGAGGGTAAAGGACTGAGGCAGATGGAGATGGAACAGAGAC
TGGAAAGGGGGAAGAGGAGGAAAAGAAACATAGGGTTTGACTGGACAGAG
TGGATGGACAGGCAGCCGAGACAAGTCTCCCCTACTCCATCTCCTTCTTC
TGCTTCCTCTTGTCTTTCTCATTTCGTCTACTTTTTTTCATTTCTTCGAC
TTCTGCGTCTTTTGCCGTCCTTCTTCCTTTGTTCGTTTGTTCCTACAAGA
ATTTACATCCCACTTGTTCCCTCGCTTCTCCTCTCTCTCTTGCTCCCTCC
CTTTACAACCAAGGTCCCTCCCCCCTCTACCTTTGAAGCATAGGAGGATG
GAGGGGAGGGAGGGAGGCAGGCAGAGAGGGAGGGAGGGAGGGAGGGAAGG
CATTCTGACCGTGTTTCACTATTTTTTGCACCTGTGGAAGTCAAAGCCAC
CGCAG
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Coding sequence (CDS) from alignment at scaffold_2:1433427..1435181+

>mRNA_1181 ID=mRNA_1181|Name=jgi.p|Nanoce1779_2|575644|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_2:1433427..1435181+ (Nannochloropsis oceanica)
ATGGATGAAGAGGAAATTGTATGCCTTCTAGCCAATATACAGAGGCACTT
GTCTGTCATTCTCTTTCTCACACGCCCCTCCCTTCCCTCCCCACCGATCT
CCCCGTCATACCGCGCTCCCGATTCCCCTCCCGCCCTTTCCCACACGGAC
TCAGACGTGTACGCACTGTACGACAACCTTCTGTCCCTCCTTCAAACCCG
AGGACAAACCAAAGGTCATCGCATCTCCACCCTCCTCGTCACCTACCCCC
CACTCCCCGACGCCCTGCTTGCCGATCCCCAAGCCGCCTTTGCACACATC
GCCAGCGACGTACAGCAGCAAATCTGGACCTACGAACGCGCGCGTCCCTC
TCCCTCACCTTCTCACACCCTCTTGGTCGGGCACTCTTTCGGGGCCTACA
TCGCCAACCTCCTCCTCCCCCACCTGACGCCGTCCCCCGCCGCCTCCATC
TACCTCTTCCCCTTCCTCTCCGAACCGACCTGGCGAGGCAAACTTCAACT
TGCGCTCGCGGATCAGGCCTACCGCCAAACGCCCCTCCTAGGCCGGGCCC
TTCATGGGATGACCACTCGGCTCTTCGATTGGCTCCTTTACTTCGTTTCC
TCCCCAGCCAAGCGGCGTAACCTCCCCCCACGCACGGACCCAGCCACGCT
CCACGCCATCTTGCGGGTCGCGGCGTGTGAGCGGGCGGAAATTGGGGGAA
AAGGGCCGGACTTATCGCATGTCGACATGCACGGGGAGAAGCACGGGAGC
AAGCCGTATTTGGTGTACACGGAGGGGGACGAGTGGAGCCCGAGATACGT
CTGGGACGCCTGGCCGGAGGAAAGGAGGGTGGATATGAGTCACATCCCTC
ATGCCTTCCCGTGCCAGGAGGCGCACGACGAGGAGGTGTGTGAAACCGTG
CTGGACATCGTGGGGAGGGTGGTGAGGGGGGAGGAGAGTGAAGGCGGCGT
GAAGGAGAGGGCCAAGTTGTAGATGGATGAAGAGGAAATTGTATGCCTTC
TAGCCAATATACAGAGGCACTTGTCTGTCATTCTCTTTCTCACACGCCCC
TCCCTTCCCTCCCCACCGATCTCCCCGTCATACCGCGCTCCCGATTCCCC
TCCCGCCCTTTCCCACACGGACTCAGACGTGTACGCACTGTACGACAACC
TTCTGTCCCTCCTTCAAACCCGAGGACAAACCAAAGGTCATCGCATCTCC
ACCCTCCTCGTCACCTACCCCCCACTCCCCGACGCCCTGCTTGCCGATCC
CCAAGCCGCCTTTGCACACATCGCCAGCGACGTACAGCAGCAAATCTGGA
CCTACGAACGCGCGCGTCCCTCTCCCTCACCTTCTCACACCCTCTTGGTC
GGGCACTCTTTCGGGGCCTACATCGCCAACCTCCTCCTCCCCCACCTGAC
GCCGTCCCCCGCCGCCTCCATCTACCTCTTCCCCTTCCTCTCCGAACCGA
CCTGGCGAGGCAAACTTCAACTTGCGCTCGCGGATCAGGCCTACCGCCAA
ACGCCCCTCCTAGGCCGGGCCCTTCATGGGATGACCACTCGGCTCTTCGA
TTGGCTCCTTTACTTCGTTTCCTCCCCAGCCAAGCGGCGTAACCTCCCCC
CACGCACGGACCCAGCCACGCTCCACGCCATCTTGCGGGTCGCGGCGTGT
GAGCGGGCGGAAATTGGGGGAAAAGGGCCGGACTTATCGCATGTCGACAT
GCACGGGGAGAAGCACGGGAGCAAGCCGTATTTGGTGTACACGGAGGGGG
ACGAGTGGAGCCCGAGATACGTCTGGGACGCCTGGCCGGAGGAAAGGAGG
GTGGATATGAGTCACATCCCTCATGCCTTCCCGTGCCAGGAGGCGCACGA
CGAGGAGGTGTGTGAAACCGTGCTGGACATCGTGGGGAGGGTGGTGAGGG
GGGAGGAGAGTGAAGGCGGCGTGAAGGAGAGGGCCAAGTTGTAG
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Synonyms
Publications