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Properties
| Property Name | Value |
|---|
| TranscriptId | 627624 |
| Track | FilteredModels2 |
| ProteinId | 627538 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1428664..1431565 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1180 ID=mRNA_1180|Name=jgi.p|Nanoce1779_2|627538|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp
ATCGACTGAGTATTTCTGTAGGCCAAGTCATGATACAATCTTGTTTTAAT
GAGTCTAGTGCCGATAGATGGTGCGCGGTGAAGCAATGCTCTTGCAAAGG
CCACTTGTCCGAGGAATCCCGTCGATTAATTGAATTAATTGACAACTACT
TTACTAGTCCATTTCTCCGCCAGCTTCCGTTCCTGTTGAGGGAGGGGGCT
GCATTTCGCTCATGGACAAAACCCGAAGGTTACTCGTAAAAATAGAACGA
TGAACTCCTTGTGGATATGCTCAGTGGCCTTACTGCTCGGGCTGGGATTG
GACGATACATGAAAGAAGGGGAGGTCGGCTGGGGTTGCGCTACTATGTTA
TTTACTGCTTGCTTTCTCGCTGTAGCCTCAACGAGCCCACCACAGCACAC
AGGTATTGCTCCGCTGTTTCCAAGGCCTCGGCCGCCTGGGGGATGAGTTC
CAAGCACTCCTCCTCCTACTCCTACTCCTCCTCTTCGTCCCGGAAACGCA
GCCGGAGTCGGAGCCGCAGCCCTCGGCAGGCTTTCGACCGGTGGAGCAAG
AACCGAACACAGTATCAGGGGCAGCGCCGGGGCCGTTCCCCCCCGGACCG
GCGACGCGACCGATCGTATGATCGAGGCCAAGACCATGACAGAAGATACC
GAGAGCTGGACAAGGAAAAGTTCGTCGGCTTCGTCAAGGGCAAGAGCATT
GAACCTCAAGAACGAAGAGGTTCTCGTCCTCGTCCACTCCCACCATTACG
GCCCTTGCCCGTGCCATCCGCCTTGCCCACGACTGCCATACTATTGCGAG
ACCTCACTGCCAGCACGACGGAGGAGATGGTCAAAGAGGCGGTTGCCCGC
TTCTATCCTGGGCAGGTCTCCCTCTTTCCCTCTGCTGAGGAGGAAGATTG
GGGAGGAATAGGGGAAAGAGTGGGGAGGGGGGGGGGAGAGGAAGGAGAAA
AAGAAAGGAAGACGCAGTGTGCAGTGGCGGAGTTTTACTCCACCGACCAC
ACCCAAGCGTTGATGGCGGCGCATGGAGGAGGCGGAGGAGGAGGCGGAGG
ACGGGAAAGTAGAGGGGGGCGGCGGCCCATTATGATCGATTATAACATGG
CAACCATGGAGTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTCACGT
GCTGCCTTGCCCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCGAGAA
GGAGGGAGGGAAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCCCACA
GAAAGTCGAGGGACAAGGACTGGGTTTGTGGGAAATGCCATAAATTGAAT
TACGGTCGACGGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCACTGA
TGCTCTGTACCCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCCAGGC
GGGCCCACGCAGATGAGAGTGAGATTCCGTGTCGCACACTCATAATGAAG
GGGTTGCCGATCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGCAGGG
AGGGTATGGGGTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGCAGCA
GAGGGGGGGCCAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGTGGAC
GGGGCATCTTTCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGGGAGG
GGGGGGGCCTCCGTGCGACCACCAGTGACCAATAATAATGGGGCTTTAGG
CCGTCCACCTCGACGATCGGCACCAGCAGCAGCACCAGCAGTAGCACCAG
CAGTAGCACCAGCACCAGCAGCACCAGCAGCACCAGCAAAACAACGGCCG
GAGTGGCCCCCGACTTTCGAGGACGGTGGAGGTGCTTACACCTACGATGT
GGCAAGCGGGTTTTTTTGGGAGGGGGGCTCGGGATTTTTCCACGACCCGG
TGAGCAAACTGTATTACTCCGTGGGGAAACAGGCTTATTTCAGGTGGGAG
GGGAGGGAGGGAGGGAGGGAGGAAGGGGGAGGGGGAAGGGGAGGGCAGTG
GGTGATGTTTGTGCCGCCGATTCCTGGAAGGGGGGTAGAGACAGAGAGGA
ACAGGGGCAGGAGCAGCAGCCTTGTCAGGAGCTGAAACAGCGGCCGTCTC
AGCGAGGAGAAATTGGAGTCAATTTGGAGGGAGGTAACGGGGAGATGGGA
GTAAAGGGGGAGGAGCGCAAGGAGAAAGATGTGCAGCTTCCCAGGAAGAC
TGTTAAGATCGCTCTCAAGCCAAAGACGACGGCGGGTGGAGGGAGTGGAT
CGAGGCCCTCCGGAGGGGCATGGATGGGTGCTGAGGACGAGGAGCAGGAG
GAGCAGGAGCAGAAGGGCGAAGGGCAGGAGGAGTTGGAGCCTCTAAGGGA
CGAAGAGCAGCAGCAGCAGCAGCAGCAGC back to topprotein sequence of jgi.p|Nanoce1779_2|627538 >mRNA_1180-protein ID=mRNA_1180-protein|Name=jgi.p|Nanoce1779_2|627538|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MSSKHSSSYSYSSSSSRKRSRSRSRSPRQAFDRWSKNRTQYQGQRRGRSP
PDRRRDRSYDRGQDHDRRYRELDKEKFVGFVKGKSIEPQERRGSRPRPLP
PLRPLPVPSALPTTAILLRDLTASTTEEMVKEAVARFYPGQVSLFPSAEE
EDWGGIGERVGRGGGEEGEKERKTQCAVAEFYSTDHTQALMAAHGGGGGG
GGGRESRGGRRPIMIDYNMATMEYCVPPPPSGPPSRAALPLAGGGWGGGK
GEKEGGKWKREEENQLRAHRKSRDKDWVCGKCHKLNYGRREDCCQCKHPK
GTDALYPPHLYEEEGRQARRAHADESEIPCRTLIMKGLPIHSNEASVVQA
LQGGYGVCVTACSLGRDSSRGGASKGTCVVEMSDVDGASFLVRESKRGVS
QGGGGPPCDHQ* back to topmRNA from alignment at scaffold_2:1428664..1431565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1180 ID=mRNA_1180|Name=jgi.p|Nanoce1779_2|627538|organism=Nannochloropsis oceanica|type=mRNA|length=2902bp|location=Sequence derived from alignment at scaffold_2:1428664..1431565- (Nannochloropsis oceanica)
ATCGACTGAGTATTTCTGTAGGCCAAGTCATGATACAATCTTGTTTTAAT
GAGTCTAGTGCCGATAGATGGTGCGCGGTGAAGCAATGCTCTTGCAAAGG
CCACTTGTCCGAGGAATCCCGTCGATTAATTGAATTAATTGACAACTACT
TTACTAGTCCATTTCTCCGCCAGCTTCCGTTCCTGTTGAGGGAGGGGGCT
GCATTTCGCTCATGGACAAAACCCGAAGGTTACTCGTAAAAATAGAACGA
TGAACTCCTTGTGGATATGCTCAGTGGCCTTACTGCTCGGGCTGGGATTG
GACGATACATGAAAGAAGGGGAGGTCGGCTGGGGTTGCGCTACTATGTTA
TTTACTGCTTGCTTTCTCGCTGTAGCCTCAACGAGCCCACCACAGCACAC
AGGTATTGCTCCGCTGTTTCCAAGGCCTCGGCCGCCTGGGGGATGAGTTC
CAAGTAAGTTTGTCCATCCCAATTAGCTCTTTGGTCCCTTCTTTCTACTG
CCTCCTGTCTGTACCCTCCCTCGAGAGTTAATGTTGCCCCCATAAGGAAA
TAAGTAGAAATATGCATGTCGATATAGCAAGGTATGCTACAAAATCTTAG
TCCTCTTGAAGTTAGACTGGCCTTTTTTCCCAGCTCCGCGCGCACCCTCA
TCCTTCTCCTGTCCTTCCTCTTTGCAACCCACAGGCACTCCTCCTCCTAC
TCCTACTCCTCCTCTTCGTCCCGGAAACGCAGCCGGAGTCGGAGCCGCAG
CCCTCGGCAGGCTTTCGACCGGTGGAGCAAGAACCGAACACAGTATCAGG
GGCAGCGCCGGGGCCGTTCCCCCCCGGACCGGCGACGCGACCGATCGTAT
GATCGAGGCCAAGACCATGACAGAAGATACCGAGAGCTGGACAAGGAAAA
GTTCGTCGGCTTCGTCAAGGGCAAGAGCATTGAACCTCAAGAACGAAGAG
GTTCTCGTCCTCGTCCACTCCCACCATTACGGCCCTTGCCCGTGCCATCC
GCCTTGCCCACGACTGCCATACTATTGCGAGACCTCACTGCCAGCACGAC
GGAGGAGATGGTCAAAGAGGCGGTTGCCCGCTTCTATCCTGGGCAGGTCT
CCCTCTTTCCCTCTGCTGAGGAGGAAGATTGGGGAGGAATAGGGGAAAGA
GTGGGGAGGGGGGGGGGAGAGGAAGGAGAAAAAGAAAGGAAGACGCAGTG
TGCAGTGGCGGAGTTTTACTCCACCGACCACACCCAAGCGTTGATGGCGG
CGCATGGAGGAGGCGGAGGAGGAGGCGGAGGACGGGAAAGTAGAGGGGGG
CGGCGGCCCATTATGATCGATTATAACATGGCAACCATGGAGTACTGTGT
GCCCCCTCCTCCTTCGGGCCCTCCCTCACGTGCTGCCTTGCCCCTCGCGG
GAGGGGGGTGGGGAGGAGGGAAGGGCGAGAAGGAGGGAGGGAAATGGAAG
AGGGAAGAGGAGAATCAGCTGCGGGCCCACAGAAAGTCGAGGGACAAGGA
CTGGGTTTGTGGGAAATGCCATAAATTGAATTACGGTCGACGGGAAGATT
GTTGTCAGTGCAAGCACCCAAAGGGCACTGATGCTCTGTACCCTCCCCAT
CTCTACGAGGAAGAGGGCAGGCAGGCCAGGCGGGCCCACGCAGATGAGAG
TGAGATTCCGTGTCGCACACTCATAATGAAGGGGTTGCCGATCCACTCCA
ACGAGGCGTCTGTCGTGCAGGCGCTGCAGGGAGGGTATGGGGTATGTGTT
ACCGCTTGTTCTTTGGGCCGGGACAGCAGCAGAGGGGGGGCCAGCAAAGG
GACGTGTGTCGTGGAAATGAGCGACGTGGACGGGGCATCTTTCCTCGTCA
GAGAGAGTAAGAGGGGTGTGAGTCAGGGAGGGGGGGGGGTAGGCGTAGTC
GTGGAGGGGAGGACGGTCCGGGTTGCATTTGCAACTGATACGTTCGCTTC
CTTGGCCGGAGGGTCGATGTTTCTCGTCGATGGGGCTCAACAATTACCGC
AGCTGCCCCTGCACTCATCAGCACCACTACAGCAGCAGCAGCAGCAGCAG
CCGCCGCCACCGCCGTCAGTGCACGGCATGTCATTACCTCTCCCCCTCCC
TCCGGCATCTGGCTATCCCCCGGGCTTCCCTCCTCCTCTTCCCCTCCCCC
TTCCTCCCTCCCTCTCTGGCGCTCCTCCAGCCTCCGTGCGACCACCAGTG
ACCAATAATAATGGGGCTTTAGGCCGTCCACCTCGACGATCGGCACCAGC
AGCAGCACCAGCAGTAGCACCAGCAGTAGCACCAGCACCAGCAGCACCAG
CAGCACCAGCAAAACAACGGCCGGAGTGGCCCCCGACTTTCGAGGACGGT
GGAGGTGCTTACACCTACGATGTGGCAAGCGGGTTTTTTTGGGAGGGGGG
CTCGGGATTTTTCCACGACCCGGTGAGCAAACTGTATTACTCCGTGGGGA
AACAGGCTTATTTCAGGTGGGAGGGGAGGGAGGGAGGGAGGGAGGAAGGG
GGAGGGGGAAGGGGAGGGCAGTGGGTGATGTTTGTGCCGCCGATTCCTGG
AAGGGGGGTAGAGACAGAGAGGAACAGGGGCAGGAGCAGCAGCCTTGTCA
GGAGCTGAAACAGCGGCCGTCTCAGCGAGGAGAAATTGGAGTCAATTTGG
AGGGAGGTAACGGGGAGATGGGAGTAAAGGGGGAGGAGCGCAAGGAGAAA
GATGTGCAGCTTCCCAGGAAGACTGTTAAGATCGCTCTCAAGCCAAAGAC
GACGGCGGGTGGAGGGAGTGGATCGAGGCCCTCCGGAGGGGCATGGATGG
GTGCTGAGGACGAGGAGCAGGAGGAGCAGGAGCAGAAGGGCGAAGGGCAG
GAGGAGTTGGAGCCTCTAAGGGACGAAGAGCAGCAGCAGCAGCAGCAGCA
GC back to topCoding sequence (CDS) from alignment at scaffold_2:1428664..1431565- >mRNA_1180 ID=mRNA_1180|Name=jgi.p|Nanoce1779_2|627538|organism=Nannochloropsis oceanica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_2:1428664..1431565- (Nannochloropsis oceanica)
CCTCCGTGCGACCACCAGTGAGCACTCCTCCTCCTACTCCTACTCCTCCT
CTTCGTCCCGGAAACGCAGCCGGAGTCGGAGCCGCAGCCCTCGGCAGGCT
TTCGACCGGTGGAGCAAGAACCGAACACAGTATCAGGGGCAGCGCCGGGG
CCGTTCCCCCCCGGACCGGCGACGCGACCGATCGTATGATCGAGGCCAAG
ACCATGACAGAAGATACCGAGAGCTGGACAAGGAAAAGTTCGTCGGCTTC
GTCAAGGGCAAGAGCATTGAACCTCAAGAACGAAGAGGTTCTCGTCCTCG
TCCACTCCCACCATTACGGCCCTTGCCCGTGCCATCCGCCTTGCCCACGA
CTGCCATACTATTGCGAGACCTCACTGCCAGCACGACGGAGGAGATGGTC
AAAGAGGCGGTTGCCCGCTTCTATCCTGGGCAGGTCTCCCTCTTTCCCTC
TGCTGAGGAGGAAGATTGGGGAGGAATAGGGGAAAGAGTGGGGAGGGGGG
GGGGAGAGGAAGGAGAAAAAGAAAGGAAGACGCAGTGTGCAGTGGCGGAG
TTTTACTCCACCGACCACACCCAAGCGTTGATGGCGGCGCATGGAGGAGG
CGGAGGAGGAGGCGGAGGACGGGAAAGTAGAGGGGGGCGGCGGCCCATTA
TGATCGATTATAACATGGCAACCATGGAGTACTGTGTGCCCCCTCCTCCT
TCGGGCCCTCCCTCACGTGCTGCCTTGCCCCTCGCGGGAGGGGGGTGGGG
AGGAGGGAAGGGCGAGAAGGAGGGAGGGAAATGGAAGAGGGAAGAGGAGA
ATCAGCTGCGGGCCCACAGAAAGTCGAGGGACAAGGACTGGGTTTGTGGG
AAATGCCATAAATTGAATTACGGTCGACGGGAAGATTGTTGTCAGTGCAA
GCACCCAAAGGGCACTGATGCTCTGTACCCTCCCCATCTCTACGAGGAAG
AGGGCAGGCAGGCCAGGCGGGCCCACGCAGATGAGAGTGAGATTCCGTGT
CGCACACTCATAATGAAGGGGTTGCCGATCCACTCCAACGAGGCGTCTGT
CGTGCAGGCGCTGCAGGGAGGGTATGGGGTATGTGTTACCGCTTGTTCTT
TGGGCCGGGACAGCAGCAGAGGGGGGGCCAGCAAAGGGACGTGTGTCGTG
GAAATGAGCGACGTGGACGGGGCATCTTTCCTCGTCAGAGAGAGTAAGAG
GGGTGTGAGTCAGGGAGGGGGGGGGATGAGTTCCAACCTCCGTGCGACCA
CCAGTGAGCACTCCTCCTCCTACTCCTACTCCTCCTCTTCGTCCCGGAAA
CGCAGCCGGAGTCGGAGCCGCAGCCCTCGGCAGGCTTTCGACCGGTGGAG
CAAGAACCGAACACAGTATCAGGGGCAGCGCCGGGGCCGTTCCCCCCCGG
ACCGGCGACGCGACCGATCGTATGATCGAGGCCAAGACCATGACAGAAGA
TACCGAGAGCTGGACAAGGAAAAGTTCGTCGGCTTCGTCAAGGGCAAGAG
CATTGAACCTCAAGAACGAAGAGGTTCTCGTCCTCGTCCACTCCCACCAT
TACGGCCCTTGCCCGTGCCATCCGCCTTGCCCACGACTGCCATACTATTG
CGAGACCTCACTGCCAGCACGACGGAGGAGATGGTCAAAGAGGCGGTTGC
CCGCTTCTATCCTGGGCAGGTCTCCCTCTTTCCCTCTGCTGAGGAGGAAG
ATTGGGGAGGAATAGGGGAAAGAGTGGGGAGGGGGGGGGGAGAGGAAGGA
GAAAAAGAAAGGAAGACGCAGTGTGCAGTGGCGGAGTTTTACTCCACCGA
CCACACCCAAGCGTTGATGGCGGCGCATGGAGGAGGCGGAGGAGGAGGCG
GAGGACGGGAAAGTAGAGGGGGGCGGCGGCCCATTATGATCGATTATAAC
ATGGCAACCATGGAGTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTC
ACGTGCTGCCTTGCCCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCG
AGAAGGAGGGAGGGAAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCC
CACAGAAAGTCGAGGGACAAGGACTGGGTTTGTGGGAAATGCCATAAATT
GAATTACGGTCGACGGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCA
CTGATGCTCTGTACCCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCC
AGGCGGGCCCACGCAGATGAGAGTGAGATTCCGTGTCGCACACTCATAAT
GAAGGGGTTGCCGATCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGC
AGGGAGGGTATGGGGTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGC
AGCAGAGGGGGGGCCAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGT
GGACGGGGCATCTTTCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGG
GAGGGGGGGGGATGAGTTCCAACCTCCGTGCGACCACCAGTGAGCACTCC
TCCTCCTACTCCTACTCCTCCTCTTCGTCCCGGAAACGCAGCCGGAGTCG
GAGCCGCAGCCCTCGGCAGGCTTTCGACCGGTGGAGCAAGAACCGAACAC
AGTATCAGGGGCAGCGCCGGGGCCGTTCCCCCCCGGACCGGCGACGCGAC
CGATCGTATGATCGAGGCCAAGACCATGACAGAAGATACCGAGAGCTGGA
CAAGGAAAAGTTCGTCGGCTTCGTCAAGGGCAAGAGCATTGAACCTCAAG
AACGAAGAGGTTCTCGTCCTCGTCCACTCCCACCATTACGGCCCTTGCCC
GTGCCATCCGCCTTGCCCACGACTGCCATACTATTGCGAGACCTCACTGC
CAGCACGACGGAGGAGATGGTCAAAGAGGCGGTTGCCCGCTTCTATCCTG
GGCAGGTCTCCCTCTTTCCCTCTGCTGAGGAGGAAGATTGGGGAGGAATA
GGGGAAAGAGTGGGGAGGGGGGGGGGAGAGGAAGGAGAAAAAGAAAGGAA
GACGCAGTGTGCAGTGGCGGAGTTTTACTCCACCGACCACACCCAAGCGT
TGATGGCGGCGCATGGAGGAGGCGGAGGAGGAGGCGGAGGACGGGAAAGT
AGAGGGGGGCGGCGGCCCATTATGATCGATTATAACATGGCAACCATGGA
GTACTGTGTGCCCCCTCCTCCTTCGGGCCCTCCCTCACGTGCTGCCTTGC
CCCTCGCGGGAGGGGGGTGGGGAGGAGGGAAGGGCGAGAAGGAGGGAGGG
AAATGGAAGAGGGAAGAGGAGAATCAGCTGCGGGCCCACAGAAAGTCGAG
GGACAAGGACTGGGTTTGTGGGAAATGCCATAAATTGAATTACGGTCGAC
GGGAAGATTGTTGTCAGTGCAAGCACCCAAAGGGCACTGATGCTCTGTAC
CCTCCCCATCTCTACGAGGAAGAGGGCAGGCAGGCCAGGCGGGCCCACGC
AGATGAGAGTGAGATTCCGTGTCGCACACTCATAATGAAGGGGTTGCCGA
TCCACTCCAACGAGGCGTCTGTCGTGCAGGCGCTGCAGGGAGGGTATGGG
GTATGTGTTACCGCTTGTTCTTTGGGCCGGGACAGCAGCAGAGGGGGGGC
CAGCAAAGGGACGTGTGTCGTGGAAATGAGCGACGTGGACGGGGCATCTT
TCCTCGTCAGAGAGAGTAAGAGGGGTGTGAGTCAGGGAGGGGGGGGGATG
AGTTCCAA back to top
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