jgi.p|Nanoce1779_2|575636, mRNA_1179 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575636
Unique NamemRNA_1179
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1081
Alignment locationscaffold_2:1427381..1428461 -

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Properties
Property NameValue
TranscriptId575722
TrackFilteredModels2
ProteinId575636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1427381..1428461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575636gene_1179Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575636mRNA_1179-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1179CDS_1179Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1179 ID=mRNA_1179|Name=jgi.p|Nanoce1779_2|575636|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp
CCCTCCCTCCCTCCCTCCCTCCCAGATAGTCGGAGAAGTCAATGGCGAGC
CTGTCTGTCTGTTGTGTAGACGTGCATTCAACTCGTGGGACCAGTGGCGA
AAACACGAGGCCAAAAGCGCCCTTCACGCTGAAAATCTGGCCAAACAATT
GGCGGAAGGCGTGATGCTACAGCAGCAGCAGCAGTATCGAGATCGGGCGG
AGGAGAGGAGACAATTGTACGGACAGGACGATAGACCCAAGAGTCTAAAG
GAGGGAGAAGGACGGGATCGAGGGAGGGGAGGAGGGCGAGGAGGAGGACG
TGAGAGGGAGCGGCGGCGAGACGACCGAGACCGAGACCGAGACCAAAGGA
AGGAAGAAAGCAGGGACGCAGAGAGGAGGAAGACGGATGTGGAGACGGCA
GGGGTGGACAAACCATTGGGAGAGGGGAATGTGGGACATCAAATGCTGAG
GTCGTTAGGCTGGAAGGAGGGGGAGGGCCTGGGAAGGGATAAGGGGGGGA
TCACGGAGCCTGTACGAGCAGACCAGGCGCTCTTGTCAGGGAGCAAGAGT
GGGGTGGGTGCTGGTGGCGGAGGGCTGGAGGGGAGGAGGGGAGGGGGGAG
GAGGCCGTCGGCGAGGGAGGTGTACGATTCGAAAGAGGTGCAGAAGGCGA
TGATGCGGGCAAGGTACGAATCGGTCGGGGGAAAGGTGGAGTGAGAGACA
GGAGGTAGAAAGGGGAAAATGGGATTGAAAGGTAAAAAAGACGGGATTGT
AGAGAGGGTGTACAGCAATACTTGCATACAGTGACATGTGCAAAGAAGGA
GAAGGAAATGGAGAAGAACAAGAAGTAGAAGAAATTGGCAGGTGAACGCC
GAAAACGCACCTTCTAAGTTTCACCGCATTATACCTCTCTGCTTTTTCCG
TCTTATTTTTGTGTCCCCTTCTATGTATCAAGTCTTTGTGTTTTGGATTT
TGTACTGAACATGTGCTTATACACTTCCTCCCTCACCCTCCTCCCTTCCT
CAACCCCCTCTTCCTCTCCCCCTTCCGCTCCTTCCCCTGCTCTTCTTCCT
CGTCTGTGAAAGCCCTCAATGCCTCCCACAT
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protein sequence of jgi.p|Nanoce1779_2|575636

>mRNA_1179-protein ID=mRNA_1179-protein|Name=jgi.p|Nanoce1779_2|575636|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MLQQQQQYRDRAEERRQLYGQDDRPKSLKEGEGRDRGRGGGRGGGRERER
RRDDRDRDRDQRKEESRDAERRKTDVETAGVDKPLGEGNVGHQMLRSLGW
KEGEGLGRDKGGITEPVRADQALLSGSKSGVGAGGGGLEGRRGGGRRPSA
REVYDSKEVQKAMMRARYESVGGKVE*
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mRNA from alignment at scaffold_2:1427381..1428461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1179 ID=mRNA_1179|Name=jgi.p|Nanoce1779_2|575636|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp|location=Sequence derived from alignment at scaffold_2:1427381..1428461- (Nannochloropsis oceanica)
CCCTCCCTCCCTCCCTCCCTCCCAGATAGTCGGAGAAGTCAATGGCGAGC
CTGTCTGTCTGTTGTGTAGACGTGCATTCAACTCGTGGGACCAGTGGCGA
AAACACGAGGCCAAAAGCGCCCTTCACGCTGAAAATCTGGCCAAACAATT
GGCGGAAGGCGTGATGCTACAGCAGCAGCAGCAGTATCGAGATCGGGCGG
AGGAGAGGAGACAATTGTACGGACAGGACGATAGACCCAAGAGTCTAAAG
GAGGGAGAAGGACGGGATCGAGGGAGGGGAGGAGGGCGAGGAGGAGGACG
TGAGAGGGAGCGGCGGCGAGACGACCGAGACCGAGACCGAGACCAAAGGA
AGGAAGAAAGCAGGGACGCAGAGAGGAGGAAGACGGATGTGGAGACGGCA
GGGGTGGACAAACCATTGGGAGAGGGGAATGTGGGACATCAAATGCTGAG
GTCGTTAGGCTGGAAGGAGGGGGAGGGCCTGGGAAGGGATAAGGGGGGGA
TCACGGAGCCTGTACGAGCAGACCAGGCGCTCTTGTCAGGGAGCAAGAGT
GGGGTGGGTGCTGGTGGCGGAGGGCTGGAGGGGAGGAGGGGAGGGGGGAG
GAGGCCGTCGGCGAGGGAGGTGTACGATTCGAAAGAGGTGCAGAAGGCGA
TGATGCGGGCAAGGTACGAATCGGTCGGGGGAAAGGTGGAGTGAGAGACA
GGAGGTAGAAAGGGGAAAATGGGATTGAAAGGTAAAAAAGACGGGATTGT
AGAGAGGGTGTACAGCAATACTTGCATACAGTGACATGTGCAAAGAAGGA
GAAGGAAATGGAGAAGAACAAGAAGTAGAAGAAATTGGCAGGTGAACGCC
GAAAACGCACCTTCTAAGTTTCACCGCATTATACCTCTCTGCTTTTTCCG
TCTTATTTTTGTGTCCCCTTCTATGTATCAAGTCTTTGTGTTTTGGATTT
TGTACTGAACATGTGCTTATACACTTCCTCCCTCACCCTCCTCCCTTCCT
CAACCCCCTCTTCCTCTCCCCCTTCCGCTCCTTCCCCTGCTCTTCTTCCT
CGTCTGTGAAAGCCCTCAATGCCTCCCACAT
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Coding sequence (CDS) from alignment at scaffold_2:1427381..1428461-

>mRNA_1179 ID=mRNA_1179|Name=jgi.p|Nanoce1779_2|575636|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_2:1427381..1428461- (Nannochloropsis oceanica)
ATGCTACAGCAGCAGCAGCAGTATCGAGATCGGGCGGAGGAGAGGAGACA
ATTGTACGGACAGGACGATAGACCCAAGAGTCTAAAGGAGGGAGAAGGAC
GGGATCGAGGGAGGGGAGGAGGGCGAGGAGGAGGACGTGAGAGGGAGCGG
CGGCGAGACGACCGAGACCGAGACCGAGACCAAAGGAAGGAAGAAAGCAG
GGACGCAGAGAGGAGGAAGACGGATGTGGAGACGGCAGGGGTGGACAAAC
CATTGGGAGAGGGGAATGTGGGACATCAAATGCTGAGGTCGTTAGGCTGG
AAGGAGGGGGAGGGCCTGGGAAGGGATAAGGGGGGGATCACGGAGCCTGT
ACGAGCAGACCAGGCGCTCTTGTCAGGGAGCAAGAGTGGGGTGGGTGCTG
GTGGCGGAGGGCTGGAGGGGAGGAGGGGAGGGGGGAGGAGGCCGTCGGCG
AGGGAGGTGTACGATTCGAAAGAGGTGCAGAAGGCGATGATGCGGGCAAG
GTACGAATCGGTCGGGGGAAAGGTGGAGTGA
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Synonyms
Publications