jgi.p|Nanoce1779_2|562994, mRNA_1176 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562994
Unique NamemRNA_1176
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length411
Alignment locationscaffold_2:1421876..1422286 -

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Properties
Property NameValue
TranscriptId563080
TrackFilteredModels2
ProteinId562994
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1421876..1422286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562994gene_1176Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1176CDS_1176Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562994mRNA_1176-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1176 ID=mRNA_1176|Name=jgi.p|Nanoce1779_2|562994|organism=Nannochloropsis oceanica|type=mRNA|length=411bp
ATGAATGAGCGGGGAGGTAGAGAGGTGAGAGAGGCCCAGAAGCAGCAGGA
GGTCGAGGATGAAGAGGAAATGGAGGTAGTTGTGGAGGAGACGGAGGGGG
AGAGGACAGAGAGGTTGGCTTTGGCGAACGATTTCAACAAGGTTTTGTTC
TATGTGGCCGCTGGGGGGGAGACGGTACGCCGGCTGTTGCGGAGCGCGAC
GCAGGGATCGTTCACGCGCTGGGATTTAATAGGATGCGAGGAGGACATGC
GAGCCATGGTGCAGATATTGGTAAGTGGGATGCAGGCGGCTCAAGGTAGG
GGGTATGGACGAGGAACAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGGGG
AGGAGACCTTAGTATTGAGGTTGAGGAAGCAGGGCTGAGTAGAGGCAAAG
GCGCGTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|562994

>mRNA_1176-protein ID=mRNA_1176-protein|Name=jgi.p|Nanoce1779_2|562994|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MNERGGREVREAQKQQEVEDEEEMEVVVEETEGERTERLALANDFNKVLF
YVAAGGETVRRLLRSATQGSFTRWDLIGCEEDMRAMVQILVSGMQAAQGR
GYGRGTGGGGGGGGGGGGDLSIEVEEAGLSRGKGAL*
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mRNA from alignment at scaffold_2:1421876..1422286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1176 ID=mRNA_1176|Name=jgi.p|Nanoce1779_2|562994|organism=Nannochloropsis oceanica|type=mRNA|length=411bp|location=Sequence derived from alignment at scaffold_2:1421876..1422286- (Nannochloropsis oceanica)
ATGAATGAGCGGGGAGGTAGAGAGGTGAGAGAGGCCCAGAAGCAGCAGGA
GGTCGAGGATGAAGAGGAAATGGAGGTAGTTGTGGAGGAGACGGAGGGGG
AGAGGACAGAGAGGTTGGCTTTGGCGAACGATTTCAACAAGGTTTTGTTC
TATGTGGCCGCTGGGGGGGAGACGGTACGCCGGCTGTTGCGGAGCGCGAC
GCAGGGATCGTTCACGCGCTGGGATTTAATAGGATGCGAGGAGGACATGC
GAGCCATGGTGCAGATATTGGTAAGTGGGATGCAGGCGGCTCAAGGTAGG
GGGTATGGACGAGGAACAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGGGG
AGGAGACCTTAGTATTGAGGTTGAGGAAGCAGGGCTGAGTAGAGGCAAAG
GCGCGTTGTAA
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Coding sequence (CDS) from alignment at scaffold_2:1421876..1422286-

>mRNA_1176 ID=mRNA_1176|Name=jgi.p|Nanoce1779_2|562994|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_2:1421876..1422286- (Nannochloropsis oceanica)
ATGAATGAGCGGGGAGGTAGAGAGGTGAGAGAGGCCCAGAAGCAGCAGGA
GGTCGAGGATGAAGAGGAAATGGAGGTAGTTGTGGAGGAGACGGAGGGGG
AGAGGACAGAGAGGTTGGCTTTGGCGAACGATTTCAACAAGGTTTTGTTC
TATGTGGCCGCTGGGGGGGAGACGGTACGCCGGCTGTTGCGGAGCGCGAC
GCAGGGATCGTTCACGCGCTGGGATTTAATAGGATGCGAGGAGGACATGC
GAGCCATGGTGCAGATATTGGTAAGTGGGATGCAGGCGGCTCAAGGTAGG
GGGTATGGACGAGGAACAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGGGG
AGGAGACCTTAGTATTGAGGTTGAGGAAGCAGGGCTGAGTAGAGGCAAAG
GCGCGTTGTAA
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Synonyms
Publications