jgi.p|Nanoce1779_2|575626, mRNA_1175 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575626
Unique Name	mRNA_1175
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1640
Alignment location	scaffold_2:1419699..1421534 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575712
Track	FilteredModels2
ProteinId	575626

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1419699..1421534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575626	gene_1175	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575626	mRNA_1175-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1175	CDS_1175	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1419699..1421534+
coding sequence from alignment at scaffold_2:1419699..1421534+

mRNA sequence

>mRNA_1175 ID=mRNA_1175|Name=jgi.p|Nanoce1779_2|575626|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
ATTCAGAGAGGTGGGTTTCCTCCTAGCTTGCGACAGTTCCATATGCTAAT
TTCCTCATAGCTATCCTACAAACCTAGAACTATGTCCTCGTAGAGTCCAG
ATCGCGAGGCGCTGTGGGATCCCCCACCGACCGCCCATACGAGACGGAAG
GAGGGCGGGTCGGGTGTTCGTTTGGCTGCAGCCTGGCTGGGAAAGTAAGC
GACAAGGTGTCTTTCCTCATTGCAGAAATAGCAACTCTTTCGATTCGGGT
GACGACTCCAATTCCTGACCGTCTCCTGAGTATAGATTATTGCTTGCGTG
TTGTGCTTTGGCCAAAAGCGTGGCGGTCTACTCCCCTTGCTCTCTGACCG
AGTTTGTCAGGAACCTTAAGGCATTAACCAGGCCGCGGATAAGGTCCTGC
TCCGCGTATTCCGTCTCCACGTTGTATACCATAGGCGATCTACATCTCAT
TTCGTGTACTGTCCCGTTTGGGATCATTGATTCGGGAAGTTTTTCAGAGG
CTAACGCATGATAAAATGCAGGGCTTACAACGACAGGAACACGACCCTGC
CAAGGACCCTCCTCTTACAACTCTTACTTACAATCTACTTTGTTCCAACG
CGACTTGGCACGCACATCCAACTCACAGATGCCACGGACCAAAGTAGGCT
ACCGTCTGCGTCACTATGAAGAAGAGGACGACTATAATACAATCGTGTGG
GTGGACGAGGATCCTGCACTGGTGTTGCTAGGGGGAGAAGTTTGGCCAGC
CTCCTTCATCGTATGCGAGCACGTTGCCTCTTTCCTTCGCAATGCTTCTG
GTGCGCGTTCATCTCTGAGTATTGTTGAACTTGGGGCGGGCACGGGACTC
TGCGGTTTGGTTACCCTTGCAACGGCCTTGGAAAGTATTACTGGGTCTGT
TCACTGCTTTCTCACCGACGAATCTCCGGCATTAAGTGACATAAATCTCA
GCCACTTTAAAATCTTAATTCTAGGATGTGAGGTTAGCCCGATGCTGCAA
ACCCAAGCCGCACTCGTAGAAACGGTGTTAGCATTGCTTACCGTCTCGTC
GTTGCCAGCTGGGTCGTCGTCTTCCTCGTTGTCCTCTTCTCCACCTTCCA
CCCGTCCTTCCACCCCTCGCAGCACTCCATCCGGACCATGTACCACCACC
TCCCCGAAAACCACGGCGGTCGCGATCCTGACCATTGACGCCTGTGTGAA
GGGCACGACATACCCATCCACATGCATGCATCCAAATCCCTGCGCGGGCC
ATCGTTTCATAAAACTAGTGGAGGACAGGGGGGGGATGAAATGGGATATC
GCCGGTGTGTGGAGCGTGTCCCAGGTGCAGGAGGCGTGTCAGCGGCGGAG
GAGGAGAGGAGGTGTGTGCGTTACTGACGGGAGCGGTGGAACAAAGAAAA
AAGGCGTCATGGGAGAGACCGAGAGGGGCAGCCATGACGATCGGGAGTTC
GCAGTCACGGCGCCAGAGGGATTGGTGATCGTGCATATCAGCCTTGAGGC
TTGATGCAACATGAGCCAGGGACTATGGGGAGGCTGGGAGTCGTCGAAAG
CAGGCAGAGCATGACAAGGATCGCGACTAAAAAGCAGTGGACAGGCAAGA
GAAGGATTGCTACTCTCCAGATAATCTTACACAGAAAAAT

protein sequence of jgi.p|Nanoce1779_2|575626

>mRNA_1175-protein ID=mRNA_1175-protein|Name=jgi.p|Nanoce1779_2|575626|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MPRTKVGYRLRHYEEEDDYNTIVWVDEDPALVLLGGEVWPASFIVCEHVA
SFLRNASGARSSLSIVELGAGTGLCGLVTLATALESITGSVHCFLTDESP
ALSDINLSHFKILILGCEVSPMLQTQAALVETVLALLTVSSLPAGSSSSS
LSSSPPSTRPSTPRSTPSGPCTTTSPKTTAVAILTIDACVKGTTYPSTCM
HPNPCAGHRFIKLVEDRGGMKWDIAGVWSVSQVQEACQRRRRRGGVCVTD
GSGGTKKKGVMGETERGSHDDREFAVTAPEGLVIVHISLEA*

mRNA from alignment at scaffold_2:1419699..1421534+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1175 ID=mRNA_1175|Name=jgi.p|Nanoce1779_2|575626|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at scaffold_2:1419699..1421534+ (Nannochloropsis oceanica)
ATTCAGAGAGGTGGGTTTCCTCCTAGCTTGCGACAGTTCCATATGCTAAT
TTCCTCATAGCTATCCTACAAACCTAGAACTATGTCCTCGTAGAGTCCAG
ATCGCGAGGCGCTGTGGGATCCCCCACCGACCGCCCATACGAGACGGAAG
GAGGGCGGGTCGGGTGTTCGTTTGGCTGCAGCCTGGCTGGGAAAGTAAGC
GACAAGGTGTCTTTCCTCATTGCAGAAATAGCAACTCTTTCGATTCGGGT
GACGACTCCAATTCCTGACCGTCTCCTGAGTATAGATTATTGCTTGCGTG
TTGTGCTTTGGCCAAAAGCGTGGCGGTCTACTCCCCTTGCTCTCTGACCG
AGTTTGTCAGGAACCTTAAGGCATTAACCAGGCCGCGGATAAGGTCCTGC
TCCGCGTATTCCGTCTCCACGTTGTATACCATAGGCGATCTACATCTCAT
TTCGTGTACTGTCCCGTTTGGGATCATTGATTCGGGAAGTTTTTCAGAGG
CTAACGCATGATAAAATGCAGGGCTTACAACGACAGGAACACGACCCTGC
CAAGGACCCTCCTCTTACAACTCTTACTTACAATCTACTTTGTTCCAACG
CGACTTGGCACGCACATCCAACTCACAGATGCCACGGACCAAAGTAGGCT
ACCGTCTGCGTCACTATGAAGAAGAGGACGACTATAATACAATCGTGTGG
GTGGACGAGGATCCTGCACTGGTGTTGCTAGGGGGAGAAGTTTGGCCAGC
CTCCTTCATCGTATGCGAGCACGTTGCCTCTTTCCTTCGCAATGCTTCTG
GTGCGCGTTCATCTCTGAGTATTGTTGAACTTGGGGCGGGCACGGGACTC
TGCGGTTTGGTTACCCTTGCAACGGCCTTGGAAAGTATTACTGGGTCTGT
TCACTGCTTTCTCACCGACGAATCTCCGGCATTAAGTGACATAAATCTCA
GCCACTTTAAAAGTACCTGGCGGCAGGCCAAGGCACATGTTGATGCCGCC
TTTTCCCCCTCCTCTTTTCCCTCGAATTCCATCACTGCCGCCTCGTCCTC
TTCCCCATCATCGTTTTTTTTCCGCCCACGCATTGGAGCTTTCCTGGGGG
TGTAATTCAAACACTCTACCCTCCCCCCTCGTCGAGGCCTGCCAGTCTTC
GGAACAAGTCTTAATTCTAGGATGTGAGGTTAGCCCGATGCTGCAAACCC
AAGCCGCACTCGTAGAAACGGTGTTAGCATTGCTTACCGTCTCGTCGTTG
CCAGCTGGGTCGTCGTCTTCCTCGTTGTCCTCTTCTCCACCTTCCACCCG
TCCTTCCACCCCTCGCAGCACTCCATCCGGACCATGTACCACCACCTCCC
CGAAAACCACGGCGGTCGCGATCCTGACCATTGACGCCTGTGTGAAGGGC
ACGACATACCCATCCACATGCATGCATCCAAATCCCTGCGCGGGCCATCG
TTTCATAAAACTAGTGGAGGACAGGGGGGGGATGAAATGGGATATCGCCG
GTGTGTGGAGCGTGTCCCAGGTGCAGGAGGCGTGTCAGCGGCGGAGGAGG
AGAGGAGGTGTGTGCGTTACTGACGGGAGCGGTGGAACAAAGAAAAAAGG
CGTCATGGGAGAGACCGAGAGGGGCAGCCATGACGATCGGGAGTTCGCAG
TCACGGCGCCAGAGGGATTGGTGATCGTGCATATCAGCCTTGAGGCTTGA
TGCAACATGAGCCAGGGACTATGGGGAGGCTGGGAGTCGTCGAAAGCAGG
CAGAGCATGACAAGGATCGCGACTAAAAAGCAGTGGACAGGCAAGAGAAG
GATTGCTACTCTCCAGATAATCTTACACAGAAAAAT

Coding sequence (CDS) from alignment at scaffold_2:1419699..1421534+

>mRNA_1175 ID=mRNA_1175|Name=jgi.p|Nanoce1779_2|575626|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_2:1419699..1421534+ (Nannochloropsis oceanica)
ATGCCACGGACCAAAGTAGGCTACCGTCTGCGTCACTATGAAGAAGAGGA
CGACTATAATACAATCGTGTGGGTGGACGAGGATCCTGCACTGGTGTTGC
TAGGGGGAGAAGTTTGGCCAGCCTCCTTCATCGTATGCGAGCACGTTGCC
TCTTTCCTTCGCAATGCTTCTGGTGCGCGTTCATCTCTGAGTATTGTTGA
ACTTGGGGCGGGCACGGGACTCTGCGGTTTGGTTACCCTTGCAACGGCCT
TGGAAAGTATTACTGGGTCTGTTCACTGCTTTCTCACCGACGAATCTCCG
GCATTAAGTGACATAAATCTCAGCCACTTTAAAATCTTAATTCTAGGATG
TGAGGTTAGCCCGATGCTGCAAACCCAAGCCGCACTCGTAGAAACGGTGT
TAGCATTGCTTACCGTCTCGTCGTTGCCAGCTGGGTCGTCGTCTTCCTCG
TTGTCCTCTTCTCCACCTTCCACCCGTCCTTCCACCCCTCGCAGCACTCC
ATCCGGACCATGTACCACCACCTCCCCGAAAACCACGGCGGTCGCGATCC
TGACCATTGACGCCTGTGTGAAGGGCACGACATACCCATCCACATGCATG
CATCCAAATCCCTGCGCGGGCCATCGTTTCATAAAACTAGTGGAGGACAG
GGGGGGGATGAAATGGGATATCGCCGGTGTGTGGAGCGTGTCCCAGGTGC
AGGAGGCGTGTCAGCGGCGGAGGAGGAGAGGAGGTGTGTGCGTTACTGAC
GGGAGCGGTGGAACAAAGAAAAAAGGCGTCATGGGAGAGACCGAGAGGGG
CAGCCATGACGATCGGGAGTTCGCAGTCACGGCGCCAGAGGGATTGGTGA
TCGTGCATATCAGCCTTGAGGCTTGAATGCCACGGACCAAAGTAGGCTAC
CGTCTGCGTCACTATGAAGAAGAGGACGACTATAATACAATCGTGTGGGT
GGACGAGGATCCTGCACTGGTGTTGCTAGGGGGAGAAGTTTGGCCAGCCT
CCTTCATCGTATGCGAGCACGTTGCCTCTTTCCTTCGCAATGCTTCTGGT
GCGCGTTCATCTCTGAGTATTGTTGAACTTGGGGCGGGCACGGGACTCTG
CGGTTTGGTTACCCTTGCAACGGCCTTGGAAAGTATTACTGGGTCTGTTC
ACTGCTTTCTCACCGACGAATCTCCGGCATTAAGTGACATAAATCTCAGC
CACTTTAAAATCTTAATTCTAGGATGTGAGGTTAGCCCGATGCTGCAAAC
CCAAGCCGCACTCGTAGAAACGGTGTTAGCATTGCTTACCGTCTCGTCGT
TGCCAGCTGGGTCGTCGTCTTCCTCGTTGTCCTCTTCTCCACCTTCCACC
CGTCCTTCCACCCCTCGCAGCACTCCATCCGGACCATGTACCACCACCTC
CCCGAAAACCACGGCGGTCGCGATCCTGACCATTGACGCCTGTGTGAAGG
GCACGACATACCCATCCACATGCATGCATCCAAATCCCTGCGCGGGCCAT
CGTTTCATAAAACTAGTGGAGGACAGGGGGGGGATGAAATGGGATATCGC
CGGTGTGTGGAGCGTGTCCCAGGTGCAGGAGGCGTGTCAGCGGCGGAGGA
GGAGAGGAGGTGTGTGCGTTACTGACGGGAGCGGTGGAACAAAGAAAAAA
GGCGTCATGGGAGAGACCGAGAGGGGCAGCCATGACGATCGGGAGTTCGC
AGTCACGGCGCCAGAGGGATTGGTGATCGTGCATATCAGCCTTGAGGCTT
GA

Synonyms

Publications