|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 575707 |
| Track | FilteredModels2 |
| ProteinId | 575621 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1414431..1417381 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1172 ID=mRNA_1172|Name=jgi.p|Nanoce1779_2|575621|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp
AGAAAAGAGTCTAAGCAAAATTACTTTCTCCTTTACGGCGTCCACCTTGC
TTTGTCGGCGCCGCCGCTTCGGCACCAGCAACATCATTCTGTCGTTGGTT
TATCTGGCCTCTTCCGCCACTCGCATCACCGCCGCTGCCACCGTCCCGGT
CTTCCTGCCCACCACTTACAACCACGCTCTCCAACCTTTTGCCACTAAAG
CTGCCTCCCGCCTGGTCTCACAAGAAACTTTTGCCACCATCCCTGAGACC
TTGCCAGACTTCGACAAAACAATGGATTATGCCCGTGCTATGACCGACAC
GCTGGAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTC
TGCTTCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCT
CATGGTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCT
CATCGAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCG
ATTGCTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAA
CACCCTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGAT
GTGGGGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATA
ACTTGAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTG
GATGTGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCG
TGATGTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGT
GTTTCGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTAT
GGAATGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGA
ATTGCTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGC
CCCAGGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACG
AAGGTGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGATGGGTC
AGACGATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCTTCAAC
GCCTCGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGGCACAT
AATACTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCTGGAAT
GCATAACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCAGGTGC
ATTTGGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGGAGCGT
TGGGGTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCTGGAAC
GTGGGAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGATTTTGT
TGCCCAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGCATCGG
GCTGTAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATACGTGCC
GTCCGTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATACCACTC
AGGCTGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGCCCGAG
ACGTACCCCTGGGGAGTGTAAGAGCAAGGGAAATGGGTCATTTAAGGGAG
AGGTGGCCGGGGTCAGTAGCCGACATACATGTGGATGGGTAAATGGTGGA
AAGCATTGCTAATTTCATCTTTGAGACTAGCGCTTTGGATTACCAAAAAG
GAGGAACAAAGAGAAGTGGTAGCGAAAGACACGGTGGGTGGATGAGACAG
AAGCGCACCGAAAAATTGCATCATGGCTGAAGAAGGCACATTGTCAGCAA
CTAAATGTGTAAAAAAGGAGAAAGCGTCCGATAGCGAGCAGGGCCATAGA
TGTCCAGAGATAATCAATACGCGTGCACGATGAGCAAGACATTTGAAAAG
CAGTATTTATCCAAGAAGACGTTCTCAAACGAGAAAGTCAATCTAAACCC
AACTTGAGGTGGGGCTGTCCCGGTGAACTATTCCTTTCTCATAAAAGGAT
CAACCTTCCTTAATGGGGGTTAGGATGTCCCCGTGAGGCAAGGGTTTATG
GTAGACCATGGGGGGCTGCAAGAACAATCGCACACACAAATGCACAAATT
GTAATGCGAAGACAACTTAAAAACACATATTATTCATTTATGAGCCGATA
GAACTTCAGGGGCCCACTTAGTTGCTCCATTGCACAAGTGCAAGTGTAAA
AATGTGTCATCCATTCTGCTTGATTATTAGAAAGATGAATATTTTCGAAA
GAATGCTGCTAGCAAGTAAAGGAGCAATATCGGTAAGGGCTATGATGGGT
CGAAAGAAAAGGAGAATAACTTTGTAGGGGAATGAGGAGTTTAAGTAAAA
CGAGGCATTCTCGGTAATGGAATTAATGGCAGTGCCAGGTGCGACCAAGT
CAGGCCACGGCCATGGATGGTAGGTCCGACAGAAGAGAAATAGGCAACAG
ACGTCCCTTGGTTGATCTGCCCCTCTATTTTGCCTTGTATCAAGTAAGAG
AAATCATAGCGATAACGAAAAAAACAATCGGAACACGAAAAGAGGC back to topprotein sequence of jgi.p|Nanoce1779_2|575621 >mRNA_1172-protein ID=mRNA_1172-protein|Name=jgi.p|Nanoce1779_2|575621|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MDYARAMTDTLEHSKLPLRNERDLDPLLQSIGDKRFVFLGEASHGTHEFY
TWRAHITKRLIEEKGFNFVAVEGDWPDCYELNRYIKGFEKEAKHPSDIMK
TYFKRWPVWMWGNWEVAALAGWMRQHNLKKAGNMKERVGFYGLDVYSLLE
SLESIVSYMRDVDGEESIKTAERALACFERVAVMGKEDVGQAYGMAATLT
PYSCRDEVVELLVRVRKEAAKLAETKPQDDEMAENSLSAEINTKVVLDAE
KYYRIMVDGSDDSWNARDSHMHDTLQRLANYYSPNSKAIIWAHNTHNGDA
RATDMGRAGMHNIGQLARETWGKDQVHLVGFGTYQGSVMAGERWGAEMKV
MPLPSGRPGTWEDVCHRAGKGQNMILLPNVLQQPLFEKRIGHRAVGVVYN
PQRDSVQYVPSVLRNRYDAFVFVDTTQAVHALKIKANPTEMPETYPWGV* back to topmRNA from alignment at scaffold_2:1414431..1417381- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1172 ID=mRNA_1172|Name=jgi.p|Nanoce1779_2|575621|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp|location=Sequence derived from alignment at scaffold_2:1414431..1417381- (Nannochloropsis oceanica)
AGAAAAGAGTCTAAGCAAAATTACTTTCTCCTTTACGGCGTCCACCTTGC
TTTGTCGGCGCCGCCGCTTCGGCACCAGCAACATCATTCTGTCGTTGGTT
TATCTGGCCTCTTCCGCCACTCGCATCACCGCCGCTGCCACCGTCCCGGT
CTTCCTGCCCACCACTTACAACCACGCTCTCCAACCTTTTGCCACTAAAG
CTGCCTCCCGCCTGGTCTCACAAGAAACTTTTGCCACCATCCCTGAGACC
TTGCCAGACTTCGACAAAACAATGGATTATGCCCGTGCTATGACCGACAC
GCTGGAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTC
TGCTTCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCT
CATGGTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCT
CATCGAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCG
ATTGCTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAA
CACCCTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGAT
GTGGGGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATA
ACTTGAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTG
GATGTGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCG
TGATGTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGT
GTTTCGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTAT
GGAATGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGA
ATTGCTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGC
CCCAGGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACG
AAGGTACGTTGTCTTCGGAGGGTCGGACATCTGAGGTGTTAAGGGTTGTG
TATGATGAGAATGATTGACAGGTGTTTGTTAAAAAGCTTTGATATCATCA
ATCAAGAGCCTGAGCTAAGTGATGGCGGCATGTTCCAACCATTCATGCTT
TCTCATGCCCGCTGTTCCTGAGCTTTTCTGAGTCCACATCGTCTGGATTT
ACATAAACATATCTATGTGACTTTCCTGTCCGAACCGTTTGATTATGGAA
ATTGGCCTGTATTTCATTCCCAGTCAAACCTGTTCGTATCTTTCCTACCT
TCCAAAACCACAATTTCTCATACTCTCTTCTCCTCGCCGAAATACTTTTG
TCCTCTAGGTGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGAT
GGGTCAGACGATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCT
TCAACGCCTCGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGG
CACATAATACTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCT
GGAATGCATAACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCA
GGTGCATTTGGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGG
AGCGTTGGGGTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCT
GGAACGTGGGAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGAT
TTTGTTGCCCAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGC
ATCGGGCTGTAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATAC
GTGCCGTCCGTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATAC
CACTCAGGCTGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGC
CCGAGACGTACCCCTGGGGAGTGTAAGAGCAAGGGAAATGGGTCATTTAA
GGGAGAGGTGGCCGGGGTCAGTAGCCGACATACATGTGGATGGGTAAATG
GTGGAAAGCATTGCTAATTTCATCTTTGAGACTAGCGCTTTGGATTACCA
AAAAGGAGGAACAAAGAGAAGTGGTAGCGAAAGACACGGTGGGTGGATGA
GACAGAAGCGCACCGAAAAATTGCATCATGGCTGAAGAAGGCACATTGTC
AGCAACTAAATGTGTAAAAAAGGAGAAAGCGTCCGATAGCGAGCAGGGCC
ATAGATGTCCAGAGATAATCAATACGCGTGCACGATGAGCAAGACATTTG
AAAAGCAGTATTTATCCAAGAAGACGTTCTCAAACGAGAAAGTCAATCTA
AACCCAACTTGAGGTGGGGCTGTCCCGGTGAACTATTCCTTTCTCATAAA
AGGATCAACCTTCCTTAATGGGGGTTAGGATGTCCCCGTGAGGCAAGGGT
TTATGGTAGACCATGGGGGGCTGCAAGAACAATCGCACACACAAATGCAC
AAATTGTAATGCGAAGACAACTTAAAAACACATATTATTCATTTATGAGC
CGATAGAACTTCAGGGGCCCACTTAGTTGCTCCATTGCACAAGTGCAAGT
GTAAAAATGTGTCATCCATTCTGCTTGATTATTAGAAAGATGAATATTTT
CGAAAGAATGCTGCTAGCAAGTAAAGGAGCAATATCGGTAAGGGCTATGA
TGGGTCGAAAGAAAAGGAGAATAACTTTGTAGGGGAATGAGGAGTTTAAG
TAAAACGAGGCATTCTCGGTAATGGAATTAATGGCAGTGCCAGGTGCGAC
CAAGTCAGGCCACGGCCATGGATGGTAGGTCCGACAGAAGAGAAATAGGC
AACAGACGTCCCTTGGTTGATCTGCCCCTCTATTTTGCCTTGTATCAAGT
AAGAGAAATCATAGCGATAACGAAAAAAACAATCGGAACACGAAAAGAGG
C back to topCoding sequence (CDS) from alignment at scaffold_2:1414431..1417381- >mRNA_1172 ID=mRNA_1172|Name=jgi.p|Nanoce1779_2|575621|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_2:1414431..1417381- (Nannochloropsis oceanica)
GTGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGATGGGTCAGA
CGATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCTTCAACGCC
TCGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGGCACATAAT
ACTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCTGGAATGCA
TAACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCAGGTGCATT
TGGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGGAGCGTTGG
GGTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCTGGAACGTG
GGAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGATTTTGTTGC
CCAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGCATCGGGCT
GTAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATACGTGCCGTC
CGTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATACCACTCAGG
CTGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGCCCGAGACG
TACCCCTGGGGAGTGTAAATGGATTATGCCCGTGCTATGACCGACACGCT
GGAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTCTGC
TTCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCTCAT
GGTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCTCAT
CGAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCGATT
GCTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAACAC
CCTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGATGTG
GGGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATAACT
TGAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTGGAT
GTGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCGTGA
TGTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGTGTT
TCGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTATGGA
ATGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGAATT
GCTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGCCCC
AGGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACGAAG
GTGGTGCTTGATGCTGAAAAATATTACCGAATCATGGTAGATGGGTCAGA
CGATTCGTGGAATGCCCGCGACAGTCACATGCACGACACTCTTCAACGCC
TCGCAAATTATTACTCGCCCAACAGCAAGGCTATCATTTGGGCACATAAT
ACTCATAATGGAGATGCCCGCGCCACGGATATGGGAAGGGCTGGAATGCA
TAACATTGGGCAACTTGCCCGAGAGACGTGGGGAAAGGATCAGGTGCATT
TGGTAGGATTTGGGACGTACCAGGGCTCGGTCATGGCCGGGGAGCGTTGG
GGTGCAGAGATGAAAGTCATGCCTTTGCCGTCTGGTCGCCCTGGAACGTG
GGAGGACGTGTGCCATCGGGCGGGGAAAGGTCAGAACATGATTTTGTTGC
CCAACGTCCTGCAGCAGCCCTTGTTTGAGAAGCGTATTGGGCATCGGGCT
GTAGGGGTGGTGTATAACCCTCAGCGTGACTCCGTCCAATACGTGCCGTC
CGTACTTAGGAATCGCTATGACGCCTTTGTGTTTGTCGATACCACTCAGG
CTGTTCACGCTCTCAAGATCAAAGCCAACCCCACTGAAATGCCCGAGACG
TACCCCTGGGGAGTGTAAATGGATTATGCCCGTGCTATGACCGACACGCT
GGAGCATTCCAAGCTGCCCCTCCGCAATGAACGTGACTTAGATCCTCTGC
TTCAATCGATTGGTGACAAGCGCTTCGTTTTCTTGGGCGAGGCTTCTCAT
GGTACGCACGAATTCTACACCTGGCGAGCGCACATCACCAAGCGTCTCAT
CGAGGAGAAAGGCTTCAACTTTGTCGCTGTCGAAGGGGACTGGCCCGATT
GCTACGAACTTAATCGTTATATTAAGGGCTTTGAGAAAGAAGCTAAACAC
CCTTCCGACATCATGAAGACTTATTTCAAGCGGTGGCCTGTATGGATGTG
GGGCAATTGGGAAGTCGCTGCGCTGGCTGGGTGGATGCGGCAGCATAACT
TGAAAAAGGCGGGAAATATGAAAGAACGCGTGGGATTTTATGGGTTGGAT
GTGTACTCGTTGCTGGAAAGTTTGGAGTCGATTGTGAGCTACATGCGTGA
TGTGGACGGAGAAGAGTCGATTAAGACTGCGGAGCGGGCCTTGGCGTGTT
TCGAGCGGGTGGCGGTAATGGGAAAGGAAGATGTGGGGCAGGCCTATGGA
ATGGCCGCGACTCTCACTCCGTACTCATGCCGCGACGAGGTCGTCGAATT
GCTTGTGAGGGTGAGAAAGGAAGCCGCCAAGCTTGCCGAGACTAAGCCCC
AGGACGACGAGATGGCGGAGAATTCGTTGAGTGCAGAAATCAATACGAAG back to top
|