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Properties
| Property Name | Value |
|---|
| TranscriptId | 576357 |
| Track | FilteredModels2 |
| ProteinId | 576271 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:309821..312494 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_117 ID=mRNA_117|Name=jgi.p|Nanoce1779_2|576271|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
ACAGGAATCGCCTCCTGTCTATTCTTCTCGGGCTCGTGCCAGTATTTCCT
CACGCTCTATCAAATACACTCCTGTATTTTACGTTGACTCTCAATCTGGT
CTGGACAAGCACCACCGGCAACATGCCCGTCGACGCCACCTCTCCTCCTA
CGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG
GCAGGCGCGGTGGCGCGTATCGACGGTGTCATCGTGGGCACTTACAGGGG
CCGAGGCACACACGCCATTAGTGAAGATTTCTTGCAGCAGGTGACACGGA
TCTTGGCATTGCGATGTGCCCAGCTCTCTCCCAATCAACGCACATTCCGG
TTCAGTGAGACAACCTGCAGCGAGAAGGTCAACTTTCACGTCGGTATGGA
TAAGGAAGCTCGTATTTACTTGGTGGCTGTGGAGAAGACCTACCCTACAC
GTGTCGCTTTGTTGGCAGTCGATGAATTCGCCAAGGAATGGAAGGAAAGC
AAAAGTAGCACCCGCTCTCTGACCTGCATGGAGGACGGGTGTCGTTCCGC
AGTGCGTGAGTGTGTCTCGGCTCTCGCGCGGCGATATGAAGACGTGGGAG
CAAACGATCAGCTGACAAGGGTCCAGGCGGGGGTGGAGGGAGTGAGGGAA
CAGATGCAGGTTAATATTACTAAAGCCTTGGAGGGACTGCAGACAACGGA
GGAGATCATGGTGCGATCTGAAGAGCTGAGGGCGGGTGCGATGGTGTTTA
AGAAGCAGACGGTGACGTTGAAGAAGATGGTTTGGTGGCAAAAAGCCAAG
AACCAGTTTATCCTTGCGGGGCTCATCGTGGCGGTGGTGGTGCTGTTGGG
ATCTTGGTTGGGGACCAAGTTCCGGAAGAAGTAGGAGAAAGAAGAAAGAG
GGGAGGAGGAGGGGAAGTGACAATTTCTGCGTGAAGATGAGTGAATCAGT
GCATGCGTGGTATGTATGCATCCATGCGCAAGAGAAATAATGTAACATTA
CATGACAAAATGTAACATTACATGACAAGCTCAGGCAAATTAACGAGCAG
AGGAGTAAGTCAATAAAGTACAACAGCAGTTCAATAGTATGAAGAAAGAA
AGAAAAAAAAGAAAAAAGGAAAGAAGAAAGAAAGAAAGAAAGCAAGCAAG
AAGGGAAGGAAGGGGGGAAGAAATGAAATGTTGTACAATAGCAGCAGGAG
CAGGATGAGCAGAAGCAGGAGCAGGAGCCAGGAGCAGGCGCCGCGGCCGG
CAGCCCCTTTTCGTCGTCTGTCTATCAAATTCTCGCAGTGGGATAAATAT
AAAACATGTCAAACATGAGCATGTTGTAAAATACACAATCATTTTTGCTA
TCAGCCAGCAAATTTCGGTTTATCTATTGTATTGTATATTGTATGTGATG
TCTGGCGGCCCACGACACTCTCTCCTACTGGAGACTTTGAACGAGCGTGC
ATTGAGCAGTCAAAAGCATGGCCTTGAGGACTTTAGGTAGAATTTTAAAA
TATAGATCTTGCCATGTCCTTCTTGGGGGTGTTAAGCCGTATTACGATGA
CACAGAGGATGAAAAAAGGACACTAAGCCTCGTCTTTTTGGGTCACTTTC
ATCGCTTCACGCCCACCTCCCACCCACCCGACACACATGACACAGACATG
AGCACAACAGGTGTGATGCGACAAATTGACTCACCCAACAGCAGCAGCAG
CAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGCGGGTCAGAAGATTATG
CCACAGA back to topprotein sequence of jgi.p|Nanoce1779_2|576271 >mRNA_117-protein ID=mRNA_117-protein|Name=jgi.p|Nanoce1779_2|576271|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MPVDATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAIS
EDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYL
VAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSA
LARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSE
ELRAGAMVFKKQTVTLKKMVWWQKAKNQFILAGLIVAVVVLLGSWLGTKF
RKK* back to topmRNA from alignment at scaffold_3:309821..312494- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_117 ID=mRNA_117|Name=jgi.p|Nanoce1779_2|576271|organism=Nannochloropsis oceanica|type=mRNA|length=2674bp|location=Sequence derived from alignment at scaffold_3:309821..312494- (Nannochloropsis oceanica)
ACAGGAATCGCCTCCTGTCTATTCTTCTCGGGCTCGTGCCAGTATTTCCT
CACGCTCTATCAAATACACTCCTGTATTTTACGTTGACTCTCAATCTGGT
CTGGACAAGCACCACCGGCAACATGCCCGTCGACGCCACCTCTCCTCCTA
CGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG
GTACGCATGTGTGTAGAGAAATGAAAGGAGTTTTCTGCTGCCGCTGGTCC
TCCTACCCTAACTTTGCTCTGCTTTTGCCACCCGACTAAGTGCAACGCCT
TTGTATGTATGGCTTCACGTGCAACAGAATATTGGCATCAATCTACTTTG
CACCTAGTCCCTCATTATCAACCCCTTCTCTCCCACTCCATCCGTCCCTT
CCTCCCTCTTCTCTCTTCTCCCCATTACAGGCAGGCGCGGTGGCGCGTAT
CGACGGTGTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGCCATTA
GTGAAGATTTCTTGCAGCAGGTGACACGGATCTTGGCATTGGTACGTCCG
GAAGGAAGTTCATGTTCGTGCCTGTTATCTCTTCGTGAGGTCGTTTTCGT
CTCGGTAGACATGCTCTTTCAGTGTACGTCTGTCTATACCGCCTTCCATC
ACAATCTCTTTCCCCCTTTCATCACTATACCCCACTCCTAGCGATGTGCC
CAGCTCTCTCCCAATCAACGCACATTCCGGTTCAGTGAGACAACCTGCAG
CGAGAAGGTCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTATTTACT
TGGTGGCTGTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTGGCAGTC
GATGAATTCGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCGCTCTCT
GACCTGCATGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTGTCTCGG
CTCTCGCGCGGCGATATGAAGACGTGGGAGCAAACGATCAGCTGACAAGG
GTCCAGGCGGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAATATTAC
TAAAGCCTTGGAGGGACTGCAGACAACGGAGGAGATCATGGTGCGATCTG
AAGAGCTGAGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTGACGTTG
AAGAAGATGGTTTGGTGGTACGTACTCTACTTTTCGCCCTTCCTCGCTCC
TTCCTTGCGGTGGTCCTTATATGCTCTTGCACTCCTCCATTTCTACGTTC
CTTCCTGTCCTCCATCCAGGCAAAAAGCCAAGAACCAGTTTATCCTTGCG
GGGCTCATCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGGACCAA
GTTCCGGAAGAAGTAGGAGAAAGAAGAAAGAGGGGAGGAGGAGGGGAAGT
GACAATTTCTGCGTGAAGATGAGTGAATCAGTGCATGCGTGGTATGTATG
CATCCATGCGCAAGAGAAATAATGTAACATTACATGACAAAATGTAACAT
TACATGACAAGCTCAGGCAAATTAACGAGCAGAGGAGTAAGTCAATAAAG
TACAACAGCAGTTCAATAGTATGAAGAAAGAAAGAAAAAAAAGAAAAAAG
GAAAGAAGAAAGAAAGAAAGAAAGCAAGCAAGAAGGGAAGGAAGGGGGGA
AGAAATGAAATGTTGTACAATAGCAGCAGGAGCAGGATGAGCAGAAGCAG
GAGCAGGAGCCAGGAGCAGGCGCCGCGGCCGGCAGCCCCTTTTCGTCGTC
TGTCTATCAAATTCTCGCAGTGGGATAAATATAAAACATGTCAAACATGA
GCATGTTGTAAAATACACAATCATTTTTGCTATCAGCCAGCAAATTTCGG
TTTATCTATTGTATTGTATATTGTATGTGATGTCTGGCGGCCCACGACAC
TCTCTCCTACTGGAGACTTTGAACGAGCGTGCATTGAGCAGTCAAAAGCA
TGGCCTTGAGGACTTTAGGTAGAATTTTAAAATATAGATCTTGCCATGTC
CTTCTTGGGGGTGTTAAGCCGTATTACGATGACACAGAGGATGAAAAAAG
GACACTAAGCCTCGTCTTTTTGGGTCACTTTCATCGCTTCACGCCCACCT
CCCACCCACCCGACACACATGACACAGACATGAGCACAACAGGTGTGATG
CGACAAATTGACTCACCCAACAGCAGCAGCAGCAGCAGCAGCGGCGGTAT
AAGTGGTGGAGGGAGCGGGAATGCGCCGGCGGACGATAGCCCAGACGTGG
AAGTGCGGAAAGCAGACCAGGAGATGATCAATGAATTTGGACGCCTCAAC
AACAAATACATTGAGCTGGACGAGGATTTGACGGGTCTCAAGGTACGTGC
GATGATGTGGGAGAAGATTGGGAGCAGAGCGCTGGGCTCTCTTCGTTGTT
TTTCGGCTTTCGTTCAAGGCTCCGGTGGTCCTCCATTCTGCTATTGACCA
GCACCAGCTTCAGCTTTATCGTTCGTAGGCGTTTCCCTGTTTTTTTCCTC
ACGAACACTCCTCCGGCTACCTTTTTTTTACCTATTTAAACACCCTCCTG
TCAAATAGGAGCAACTGGAGAAGCTCGACGACGCCGTCACAGAGCTGATG
GTGGGAGTAGGTGGACCCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGA
GGTATCAGAAGATTATGCCACAGA back to topCoding sequence (CDS) from alignment at scaffold_3:309821..312494- >mRNA_117 ID=mRNA_117|Name=jgi.p|Nanoce1779_2|576271|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_3:309821..312494- (Nannochloropsis oceanica)
GCAAAAAGCCAAGAACCAGTTTATCCTTGCGGGGCTCATCGTGGCGGTGG
TGGTGCTGTTGGGATCTTGGTTGGGGACCAAGTTCCGGAAGAAGTAGCGA
TGTGCCCAGCTCTCTCCCAATCAACGCACATTCCGGTTCAGTGAGACAAC
CTGCAGCGAGAAGGTCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTA
TTTACTTGGTGGCTGTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTG
GCAGTCGATGAATTCGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCG
CTCTCTGACCTGCATGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTG
TCTCGGCTCTCGCGCGGCGATATGAAGACGTGGGAGCAAACGATCAGCTG
ACAAGGGTCCAGGCGGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAA
TATTACTAAAGCCTTGGAGGGACTGCAGACAACGGAGGAGATCATGGTGC
GATCTGAAGAGCTGAGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTG
ACGTTGAAGAAGATGGTTTGGTGGCAGGCGCGGTGGCGCGTATCGACGGT
GTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGCCATTAGTGAAGA
TTTCTTGCAGCAGGTGACACGGATCTTGGCATTGATGCCCGTCGACGCCA
CCTCTCCTCCTACGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAAT
TTGCGGCTCACGGCAAAAAGCCAAGAACCAGTTTATCCTTGCGGGGCTCA
TCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGGACCAAGTTCCGG
AAGAAGTAGCGATGTGCCCAGCTCTCTCCCAATCAACGCACATTCCGGTT
CAGTGAGACAACCTGCAGCGAGAAGGTCAACTTTCACGTCGGTATGGATA
AGGAAGCTCGTATTTACTTGGTGGCTGTGGAGAAGACCTACCCTACACGT
GTCGCTTTGTTGGCAGTCGATGAATTCGCCAAGGAATGGAAGGAAAGCAA
AAGTAGCACCCGCTCTCTGACCTGCATGGAGGACGGGTGTCGTTCCGCAG
TGCGTGAGTGTGTCTCGGCTCTCGCGCGGCGATATGAAGACGTGGGAGCA
AACGATCAGCTGACAAGGGTCCAGGCGGGGGTGGAGGGAGTGAGGGAACA
GATGCAGGTTAATATTACTAAAGCCTTGGAGGGACTGCAGACAACGGAGG
AGATCATGGTGCGATCTGAAGAGCTGAGGGCGGGTGCGATGGTGTTTAAG
AAGCAGACGGTGACGTTGAAGAAGATGGTTTGGTGGCAGGCGCGGTGGCG
CGTATCGACGGTGTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGC
CATTAGTGAAGATTTCTTGCAGCAGGTGACACGGATCTTGGCATTGATGC
CCGTCGACGCCACCTCTCCTCCTACGTCTCCCTATTCCTTACTGGCGGGG
GCGGACAAAAATTTGCGGCTCACGGCAAAAAGCCAAGAACCAGTTTATCC
TTGCGGGGCTCATCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGG
ACCAAGTTCCGGAAGAAGTAGCGATGTGCCCAGCTCTCTCCCAATCAACG
CACATTCCGGTTCAGTGAGACAACCTGCAGCGAGAAGGTCAACTTTCACG
TCGGTATGGATAAGGAAGCTCGTATTTACTTGGTGGCTGTGGAGAAGACC
TACCCTACACGTGTCGCTTTGTTGGCAGTCGATGAATTCGCCAAGGAATG
GAAGGAAAGCAAAAGTAGCACCCGCTCTCTGACCTGCATGGAGGACGGGT
GTCGTTCCGCAGTGCGTGAGTGTGTCTCGGCTCTCGCGCGGCGATATGAA
GACGTGGGAGCAAACGATCAGCTGACAAGGGTCCAGGCGGGGGTGGAGGG
AGTGAGGGAACAGATGCAGGTTAATATTACTAAAGCCTTGGAGGGACTGC
AGACAACGGAGGAGATCATGGTGCGATCTGAAGAGCTGAGGGCGGGTGCG
ATGGTGTTTAAGAAGCAGACGGTGACGTTGAAGAAGATGGTTTGGTGGCA
GGCGCGGTGGCGCGTATCGACGGTGTCATCGTGGGCACTTACAGGGGCCG
AGGCACACACGCCATTAGTGAAGATTTCTTGCAGCAGGTGACACGGATCT
TGGCATTGATGCCCGTCGACGCCACCTCTCCTCCTACGTCTCCCTATTCC
TTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACGGCAAAAAGCCAAGA
ACCAGTTTATCCTTGCGGGGCTCATCGTGGCGGTGGTGGTGCTGTTGGGA
TCTTGGTTGGGGACCAAGTTCCGGAAGAAGTAGCGATGTGCCCAGCTCTC
TCCCAATCAACGCACATTCCGGTTCAGTGAGACAACCTGCAGCGAGAAGG
TCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTATTTACTTGGTGGCT
GTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTGGCAGTCGATGAATT
CGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCGCTCTCTGACCTGCA
TGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTGTCTCGGCTCTCGCG
CGGCGATATGAAGACGTGGGAGCAAACGATCAGCTGACAAGGGTCCAGGC
GGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAATATTACTAAAGCCT
TGGAGGGACTGCAGACAACGGAGGAGATCATGGTGCGATCTGAAGAGCTG
AGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTGACGTTGAAGAAGAT
GGTTTGGTGGCAGGCGCGGTGGCGCGTATCGACGGTGTCATCGTGGGCAC
TTACAGGGGCCGAGGCACACACGCCATTAGTGAAGATTTCTTGCAGCAGG
TGACACGGATCTTGGCATTGATGCCCGTCGACGCCACCTCTCCTCCTACG
TCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG back to top
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