jgi.p|Nanoce1779_2|575614, mRNA_1169 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575614
Unique NamemRNA_1169
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_2:1406520..1407331 -

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Properties
Property NameValue
TranscriptId575700
TrackFilteredModels2
ProteinId575614
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1406520..1407331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575614gene_1169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575614mRNA_1169-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1169CDS_1169Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1169 ID=mRNA_1169|Name=jgi.p|Nanoce1779_2|575614|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
GGACTGTAGTTGTTTTCTGTCGTAGCTATTCTACAAGCCTAGAACGATCG
CATACGAGGCACTCTAGGCATTGCATACGAGGGAAGCCTTCCAACAATAT
GATGTTGCCTATACTTCCCCGCGTCTTTAAAGCGACTTTGATAGTTTTTA
CACCTAGCGAAGTCCCCAGAGGGCGTGTAGATAGGTGTGTCTAGTGGCTT
GCGTGTGTGAGTGTATGTGTGAATGAAGGGTGTGGTGGGGGGTGTATGCG
CACGAGTGGGTATGTGTCTGTACGGTTCATTCACTTATTTTTTGTCTTTC
GGTCTGCTTCTCTTAATACATGCCCCCCTTCTCTCTCAACATCACCGTCG
TCCCCCCTCATCCCTCCCTCCATTTCTCTTTCATCTTCTGCCCAGAGCGA
CCTCAACGGCGCGTTCGATCCTTTTCCCTTCCCTTCATATTTTGCTTCTC
ACTCCCTCATCTCTTTATCCACCCTCCTTCTTTTTCTTCCTTGTGACGTT
TCCTTCCCCTTCAAGTGCTATGTGATACACGCAGGGAGGACGGGAGGGAA
GGAGGGCGGCTGCTGTTGCCGGCGATGATGATGGTGGTGGTCAGTGTCGT
GCTACATATAGCTCTTGATAGTCTTACATTAATCATCTTTAGGCTTCCTC
TTGTTTCCTTTTAGTCTCGAGCGGCCAAGACCTGCTTGTCGGCTTCTGAG
AGGACGTTGCGCTTGACGCGGCTGTAGAGATCGCAATGGGTGGAACGAAG
AGGTGTGGTTGTGTGAGTGCATGCCCGTAGCTCCTTCCCTCCCTTCCTCC
CTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|575614

>mRNA_1169-protein ID=mRNA_1169-protein|Name=jgi.p|Nanoce1779_2|575614|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MRTSGYVSVRFIHLFFVFRSASLNTCPPSLSTSPSSPLIPPSISLSSSAQ
SDLNGAFDPFPFPSYFASHSLISLSTLLLFLPCDVSFPFKCYVIHAGRTG
GKEGGCCCRR*
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mRNA from alignment at scaffold_2:1406520..1407331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1169 ID=mRNA_1169|Name=jgi.p|Nanoce1779_2|575614|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at scaffold_2:1406520..1407331- (Nannochloropsis oceanica)
GGACTGTAGTTGTTTTCTGTCGTAGCTATTCTACAAGCCTAGAACGATCG
CATACGAGGCACTCTAGGCATTGCATACGAGGGAAGCCTTCCAACAATAT
GATGTTGCCTATACTTCCCCGCGTCTTTAAAGCGACTTTGATAGTTTTTA
CACCTAGCGAAGTCCCCAGAGGGCGTGTAGATAGGTGTGTCTAGTGGCTT
GCGTGTGTGAGTGTATGTGTGAATGAAGGGTGTGGTGGGGGGTGTATGCG
CACGAGTGGGTATGTGTCTGTACGGTTCATTCACTTATTTTTTGTCTTTC
GGTCTGCTTCTCTTAATACATGCCCCCCTTCTCTCTCAACATCACCGTCG
TCCCCCCTCATCCCTCCCTCCATTTCTCTTTCATCTTCTGCCCAGAGCGA
CCTCAACGGCGCGTTCGATCCTTTTCCCTTCCCTTCATATTTTGCTTCTC
ACTCCCTCATCTCTTTATCCACCCTCCTTCTTTTTCTTCCTTGTGACGTT
TCCTTCCCCTTCAAGTGCTATGTGATACACGCAGGGAGGACGGGAGGGAA
GGAGGGCGGCTGCTGTTGCCGGCGATGATGATGGTGGTGGTCAGTGTCGT
GCTACATATAGCTCTTGATAGTCTTACATTAATCATCTTTAGGCTTCCTC
TTGTTTCCTTTTAGTCTCGAGCGGCCAAGACCTGCTTGTCGGCTTCTGAG
AGGACGTTGCGCTTGACGCGGCTGTAGAGATCGCAATGGGTGGAACGAAG
AGGTGTGGTTGTGTGAGTGCATGCCCGTAGCTCCTTCCCTCCCTTCCTCC
CTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_2:1406520..1407331-

>mRNA_1169 ID=mRNA_1169|Name=jgi.p|Nanoce1779_2|575614|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_2:1406520..1407331- (Nannochloropsis oceanica)
ATGCGCACGAGTGGGTATGTGTCTGTACGGTTCATTCACTTATTTTTTGT
CTTTCGGTCTGCTTCTCTTAATACATGCCCCCCTTCTCTCTCAACATCAC
CGTCGTCCCCCCTCATCCCTCCCTCCATTTCTCTTTCATCTTCTGCCCAG
AGCGACCTCAACGGCGCGTTCGATCCTTTTCCCTTCCCTTCATATTTTGC
TTCTCACTCCCTCATCTCTTTATCCACCCTCCTTCTTTTTCTTCCTTGTG
ACGTTTCCTTCCCCTTCAAGTGCTATGTGATACACGCAGGGAGGACGGGA
GGGAAGGAGGGCGGCTGCTGTTGCCGGCGATGA
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Synonyms
Publications