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Properties
| Property Name | Value |
|---|
| TranscriptId | 154864 |
| Track | FilteredModels2 |
| ProteinId | 154778 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1404682..1407331 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1168 ID=mRNA_1168|Name=jgi.p|Nanoce1779_2|154778|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
CACATCCAGAGATCCGCAAATTGTTTGGCCCCTGTCCATGGACCAAATAC
AAGGTGGCTGCCATTATCACAATACAGGTGCAGAAAAAGGGAAGGAGGGA
AGGAGAAAGAGAGGGAGGGGAGGGAAGTCGAAGATGAAGGTGAATGTGTG
AGCAAGACAAATACACATGGGTAACGTCCATCTGTAACCCACACGTTTCC
CTCTCCTCCTCTGTCCCTTGCTTCCTCTCAGGTTCTGGCCGCCATCATCC
TCCGCAGCGCCCCCTTTCCCCTCCTCCTCCTCCTCACCTACACCCTCTCT
GGATCCTGCAATCATTTCCTCACCCTCACCATGCACGAAGTCGCCCACAA
CTTGGCATTCAAGGGCCTGGTTGCCAATCGGATCTTTTCCATCATCGCCA
ATCTGCCTCTAGGGATTCCGGCGGCTATCTCGTTCAAGCGGTACCACATG
GAACACCACAAGTACCAAGGCAACGAGTTCATAGACGTGGACTTGCCCAC
GGACGCCGAAGGCAAGTTTTTCCGGGGCGGGCCTCTCAAGCTTCTCTTCG
TGTTCCTGATGCCCGCATTCTACTCCCTCCGCCCTCTGCTGGTGCGCCCC
AAAAAGCCGAGCAAGTGGGAAGGGATCAACATCCTCGTCCAAATGGCCTT
CGACCTCATCGTCTTCCTTCTCTTGGGATGGAAGTCCTTGTTCTACCTCG
TCATAGGCACATTGCTAGGCACGCGCCTCCACGAGGTGCGTCGGATAGCT
CCGGAATTCTACATGCCTCTGCCTCACTACTACTCCTGGACCAAAGTCAT
ATGGGACTTTGTTGTGGACCCCGCGGTTACTCCCTTCAACCGCGTCAAGC
GCAACGTCCTCTCAGAAGCCGACAAGCAGGTCTTGGCCGCTCGAGACTAA
AAGGAAACAAGAGGAAGCCTAAAGATGATTAATCCACTAGACACACCTAT
CTACACGCCCTCTGGGGACTTCGCTAGGTGTAAAAACTATCAAAGTCGCT
TTAAAGACGCGGGGAAGTATAGGCAACATCATATTGTTGGAAGGCTTCCC
TCGTATGCAATGCCTAGAGTGCCTCGTATGCGATCGTTCTAGGCTTGTAG
AATAGCTACGACAGAAAACAACTACAGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|154778 >mRNA_1168-protein ID=mRNA_1168-protein|Name=jgi.p|Nanoce1779_2|154778|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MCEQDKYTWVTSICNPHVSLSSSVPCFLSGSGRHHPPQRPLSPPPPPHLH
PLWILQSFPHPHHARSRPQLGIQGPGCQSDLFHHRQSASRDSGGYLVQAV
PHGTPQVPRQRVHRRGLAHGRRRQVFPGRASQASLRVPDARILLPPPSAG
APQKAEQVGRDQHPRPNGLRPHRLPSLGMEVLVLPRHRHIARHAPPRGAS
DSSGILHASASLLLLDQSHMGLCCGPRGYSLQPRQAQRPLRSRQAGLGRS
RLKGNKRKPKDD* back to topmRNA from alignment at scaffold_2:1404682..1407331+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1168 ID=mRNA_1168|Name=jgi.p|Nanoce1779_2|154778|organism=Nannochloropsis oceanica|type=mRNA|length=2650bp|location=Sequence derived from alignment at scaffold_2:1404682..1407331+ (Nannochloropsis oceanica)
CACATCCAGAGATCCGCAAATTGTTTGGCCCCTGTCCATGGACCAAATAC
AAGGTGGCTGCCATTATCACAATACAGGTGCAGAAAAAGGGAAGGAGGGA
AGGAGAAAGAGAGGGAGGGGAGGGAAGTCGAAGATGAAGGTGAATGTGTG
AGCAAGACAAATACACATGGGTAACGTCCATCTGTAACCCACACGTTTCC
CTCTCCTCCTCTGTCCCTTGCTTCCTCTCAGGTTCTGGCCGCCATCATCC
TCCGCAGCGCCCCCTTTCCCCTCCTCCTCCTCCTCACCTACACCCTCTCT
GGATCCTGCAATCATTTCCTCACCCTCACCATGCACGAAGTCGCCCACAA
CTTGGCATTCAAGGGCCTGGTTGCCAATCGGATCTTTTCCATCATCGCCA
ATCTGCCTCTAGGGATTCCGGCGGCTATGTACGTCCGAGAGGGAGGGAGG
GAGGGAGGGAGGATAGGAAGGGAGGAGGGAAGGAGAACGGGAAGGAGAAA
GGGAACGATGGAAGGAGAGAACGAGAGAGAATTGTCTCAGATGCCGGATG
TTGATGACCCACACAAAGTTTCTCGTTACTACTTCTCTTGAATTCATGCT
TGCTCATCCTTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTTCT
TCCTCGCAGCTCGTTCAAGCGGTACCACATGGAACACCACAAGTACCAAG
GCAACGAGTTCATAGACGTGGACTTGCCCACGGACGCCGAAGGTGAGGGA
GGGAGGAGGAGAGGGCGGGAGGGGAGGGAGGGCGTCGACGGCAGTCCAAA
AGAAGTGTAGCAGGGCCGTGTAACTCACCAATCCCTCCTGTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGGCAAGTTTTTCCGG
GGCGGGCCTCTCAAGCTTCTCTTCGTGTTCCTGATGCCCGCATTCTACTC
CCTCCGCCCTCTGCTGGTGCGCCCCAAAAAGCCGAGCAAGTGGGAAGGGA
TCAACATCCTCGTCCAAATGGCCTTCGACCTCATCGTCTTCCTTCTCTTG
GGATGGAAGTCCTTGTTCTACCTCGTCATAGGCACATTGCTAGGTACACA
AGCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCACCCTACCTGTCTACCTACCTACCTATCTTCCATCTCCGATAG
CACCGAGCCCCCCGCAAAAGCCTCACCCCTCCCTCCCTTCCTCCCTCCCT
CCCTCAGGCATGGGCATCCACCCCATGGCCGGTCATTTTATTGCCGAGCA
TTTCGTCTACCAAGCGGGACAGGAGACCTACTCCTATTACGGACCTCTCA
ATTGGCTCTCCCTTAATGTGGGCTACCACAACGAACACCACGATTTCCCC
AACATACCAGGTACCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTGTGTGGACGTGTTCGTA
CCGCCAAGTCGGGCCAATGGGCTGACTCCTTCCTCCCTCTTTCCCTCCTC
CCTCCCTCTTTCCCTCCTCCCTCCCTCTTTCCCTCCTTCCTTCCTTTCCT
TCCTATATTCTCGAATGAACACCCTCCCACCTCCCCTCCCCTTCCCTCCC
CTCCCTCCTCCTCGTCCTCCTCCCCCTCCAGGCACGCGCCTCCACGAGGT
GCGTCGGATAGCTCCGGAATTCTACATGCCTCTGCCTCACTACTACTCCT
GGACCAAAGTCATATGGGACTTTGTTGTGGACCCCGCGGTTACTCCCTTC
AAGTACGGCGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGAAGGGAGGGAAGGAGCTACGGGCATGCACTCACACAACCACACCT
CTTCGTTCCACCCATTGCGATCTCTACAGCCGCGTCAAGCGCAACGTCCT
CTCAGAAGCCGACAAGCAGGTCTTGGCCGCTCGAGACTAAAAGGAAACAA
GAGGAAGCCTAAAGATGATTAATGTAAGACTATCAAGAGCTATATGTAGC
ACGACACTGACCACCACCATCATCATCGCCGGCAACAGCAGCCGCCCTCC
TTCCCTCCCGTCCTCCCTGCGTGTATCACATAGCACTTGAAGGGGAAGGA
AACGTCACAAGGAAGAAAAAGAAGGAGGGTGGATAAAGAGATGAGGGAGT
GAGAAGCAAAATATGAAGGGAAGGGAAAAGGATCGAACGCGCCGTTGAGG
TCGCTCTGGGCAGAAGATGAAAGAGAAATGGAGGGAGGGATGAGGGGGGA
CGACGGTGATGTTGAGAGAGAAGGGGGGCATGTATTAAGAGAAGCAGACC
GAAAGACAAAAAATAAGTGAATGAACCGTACAGACACATACCCACTCGTG
CGCATACACCCCCCACCACACCCTTCATTCACACATACACTCACACACGC
AAGCCACTAGACACACCTATCTACACGCCCTCTGGGGACTTCGCTAGGTG
TAAAAACTATCAAAGTCGCTTTAAAGACGCGGGGAAGTATAGGCAACATC
ATATTGTTGGAAGGCTTCCCTCGTATGCAATGCCTAGAGTGCCTCGTATG
CGATCGTTCTAGGCTTGTAGAATAGCTACGACAGAAAACAACTACAGTCC
back to topCoding sequence (CDS) from alignment at scaffold_2:1404682..1407331+ >mRNA_1168 ID=mRNA_1168|Name=jgi.p|Nanoce1779_2|154778|organism=Nannochloropsis oceanica|type=CDS|length=3945bp|location=Sequence derived from alignment at scaffold_2:1404682..1407331+ (Nannochloropsis oceanica)
ATGTGTGAGCAAGACAAATACACATGGGTAACGTCCATCTGTAACCCACA
CGTTTCCCTCTCCTCCTCTGTCCCTTGCTTCCTCTCAGGTTCTGGCCGCC
ATCATCCTCCGCAGCGCCCCCTTTCCCCTCCTCCTCCTCCTCACCTACAC
CCTCTCTGGATCCTGCAATCATTTCCTCACCCTCACCATGCACGAAGTCG
CCCACAACTTGGCATTCAAGGGCCTGGTTGCCAATCGGATCTTTTCCATC
ATCGCCAATCTGCCTCTAGGGATTCCGGCGGCTATCTCGTTCAAGCGGTA
CCACATGGAACACCACAAGTACCAAGGCAACGAGTTCATAGACGTGGACT
TGCCCACGGACGCCGAAGGCAAGTTTTTCCGGGGCGGGCCTCTCAAGCTT
CTCTTCGTGTTCCTGATGCCCGCATTCTACTCCCTCCGCCCTCTGCTGGT
GCGCCCCAAAAAGCCGAGCAAGTGGGAAGGGATCAACATCCTCGTCCAAA
TGGCCTTCGACCTCATCGTCTTCCTTCTCTTGGGATGGAAGTCCTTGTTC
TACCTCGTCATAGGCACATTGCTAGGCACGCGCCTCCACGAGGTGCGTCG
GATAGCTCCGGAATTCTACATGCCTCTGCCTCACTACTACTCCTGGACCA
AAGTCATATGGGACTTTGTTGTGGACCCCGCGGTTACTCCCTTCAACCGC
GTCAAGCGCAACGTCCTCTCAGAAGCCGACAAGCAGGTCTTGGCCGCTCG
AGACTAAAAGGAAACAAGAGGAAGCCTAAAGATGATTAAATGTGTGAGCA
AGACAAATACACATGGGTAACGTCCATCTGTAACCCACACGTTTCCCTCT
CCTCCTCTGTCCCTTGCTTCCTCTCAGGTTCTGGCCGCCATCATCCTCCG
CAGCGCCCCCTTTCCCCTCCTCCTCCTCCTCACCTACACCCTCTCTGGAT
CCTGCAATCATTTCCTCACCCTCACCATGCACGAAGTCGCCCACAACTTG
GCATTCAAGGGCCTGGTTGCCAATCGGATCTTTTCCATCATCGCCAATCT
GCCTCTAGGGATTCCGGCGGCTATCTCGTTCAAGCGGTACCACATGGAAC
ACCACAAGTACCAAGGCAACGAGTTCATAGACGTGGACTTGCCCACGGAC
GCCGAAGGCAAGTTTTTCCGGGGCGGGCCTCTCAAGCTTCTCTTCGTGTT
CCTGATGCCCGCATTCTACTCCCTCCGCCCTCTGCTGGTGCGCCCCAAAA
AGCCGAGCAAGTGGGAAGGGATCAACATCCTCGTCCAAATGGCCTTCGAC
CTCATCGTCTTCCTTCTCTTGGGATGGAAGTCCTTGTTCTACCTCGTCAT
AGGCACATTGCTAGGCACGCGCCTCCACGAGGTGCGTCGGATAGCTCCGG
AATTCTACATGCCTCTGCCTCACTACTACTCCTGGACCAAAGTCATATGG
GACTTTGTTGTGGACCCCGCGGTTACTCCCTTCAACCGCGTCAAGCGCAA
CGTCCTCTCAGAAGCCGACAAGCAGGTCTTGGCCGCTCGAGACTAAAAGG
AAACAAGAGGAAGCCTAAAGATGATTAAATGTGTGAGCAAGACAAATACA
CATGGGTAACGTCCATCTGTAACCCACACGTTTCCCTCTCCTCCTCTGTC
CCTTGCTTCCTCTCAGGTTCTGGCCGCCATCATCCTCCGCAGCGCCCCCT
TTCCCCTCCTCCTCCTCCTCACCTACACCCTCTCTGGATCCTGCAATCAT
TTCCTCACCCTCACCATGCACGAAGTCGCCCACAACTTGGCATTCAAGGG
CCTGGTTGCCAATCGGATCTTTTCCATCATCGCCAATCTGCCTCTAGGGA
TTCCGGCGGCTATCTCGTTCAAGCGGTACCACATGGAACACCACAAGTAC
CAAGGCAACGAGTTCATAGACGTGGACTTGCCCACGGACGCCGAAGGCAA
GTTTTTCCGGGGCGGGCCTCTCAAGCTTCTCTTCGTGTTCCTGATGCCCG
CATTCTACTCCCTCCGCCCTCTGCTGGTGCGCCCCAAAAAGCCGAGCAAG
TGGGAAGGGATCAACATCCTCGTCCAAATGGCCTTCGACCTCATCGTCTT
CCTTCTCTTGGGATGGAAGTCCTTGTTCTACCTCGTCATAGGCACATTGC
TAGGCACGCGCCTCCACGAGGTGCGTCGGATAGCTCCGGAATTCTACATG
CCTCTGCCTCACTACTACTCCTGGACCAAAGTCATATGGGACTTTGTTGT
GGACCCCGCGGTTACTCCCTTCAACCGCGTCAAGCGCAACGTCCTCTCAG
AAGCCGACAAGCAGGTCTTGGCCGCTCGAGACTAAAAGGAAACAAGAGGA
AGCCTAAAGATGATTAAATGTGTGAGCAAGACAAATACACATGGGTAACG
TCCATCTGTAACCCACACGTTTCCCTCTCCTCCTCTGTCCCTTGCTTCCT
CTCAGGTTCTGGCCGCCATCATCCTCCGCAGCGCCCCCTTTCCCCTCCTC
CTCCTCCTCACCTACACCCTCTCTGGATCCTGCAATCATTTCCTCACCCT
CACCATGCACGAAGTCGCCCACAACTTGGCATTCAAGGGCCTGGTTGCCA
ATCGGATCTTTTCCATCATCGCCAATCTGCCTCTAGGGATTCCGGCGGCT
ATCTCGTTCAAGCGGTACCACATGGAACACCACAAGTACCAAGGCAACGA
GTTCATAGACGTGGACTTGCCCACGGACGCCGAAGGCAAGTTTTTCCGGG
GCGGGCCTCTCAAGCTTCTCTTCGTGTTCCTGATGCCCGCATTCTACTCC
CTCCGCCCTCTGCTGGTGCGCCCCAAAAAGCCGAGCAAGTGGGAAGGGAT
CAACATCCTCGTCCAAATGGCCTTCGACCTCATCGTCTTCCTTCTCTTGG
GATGGAAGTCCTTGTTCTACCTCGTCATAGGCACATTGCTAGGCACGCGC
CTCCACGAGGTGCGTCGGATAGCTCCGGAATTCTACATGCCTCTGCCTCA
CTACTACTCCTGGACCAAAGTCATATGGGACTTTGTTGTGGACCCCGCGG
TTACTCCCTTCAACCGCGTCAAGCGCAACGTCCTCTCAGAAGCCGACAAG
CAGGTCTTGGCCGCTCGAGACTAAAAGGAAACAAGAGGAAGCCTAAAGAT
GATTAAATGTGTGAGCAAGACAAATACACATGGGTAACGTCCATCTGTAA
CCCACACGTTTCCCTCTCCTCCTCTGTCCCTTGCTTCCTCTCAGGTTCTG
GCCGCCATCATCCTCCGCAGCGCCCCCTTTCCCCTCCTCCTCCTCCTCAC
CTACACCCTCTCTGGATCCTGCAATCATTTCCTCACCCTCACCATGCACG
AAGTCGCCCACAACTTGGCATTCAAGGGCCTGGTTGCCAATCGGATCTTT
TCCATCATCGCCAATCTGCCTCTAGGGATTCCGGCGGCTATCTCGTTCAA
GCGGTACCACATGGAACACCACAAGTACCAAGGCAACGAGTTCATAGACG
TGGACTTGCCCACGGACGCCGAAGGCAAGTTTTTCCGGGGCGGGCCTCTC
AAGCTTCTCTTCGTGTTCCTGATGCCCGCATTCTACTCCCTCCGCCCTCT
GCTGGTGCGCCCCAAAAAGCCGAGCAAGTGGGAAGGGATCAACATCCTCG
TCCAAATGGCCTTCGACCTCATCGTCTTCCTTCTCTTGGGATGGAAGTCC
TTGTTCTACCTCGTCATAGGCACATTGCTAGGCACGCGCCTCCACGAGGT
GCGTCGGATAGCTCCGGAATTCTACATGCCTCTGCCTCACTACTACTCCT
GGACCAAAGTCATATGGGACTTTGTTGTGGACCCCGCGGTTACTCCCTTC
AACCGCGTCAAGCGCAACGTCCTCTCAGAAGCCGACAAGCAGGTCTTGGC
CGCTCGAGACTAAAAGGAAACAAGAGGAAGCCTAAAGATGATTAA back to top
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