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Properties
| Property Name | Value |
|---|
| TranscriptId | 627614 |
| Track | FilteredModels2 |
| ProteinId | 627528 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1387983..1390577 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1165 ID=mRNA_1165|Name=jgi.p|Nanoce1779_2|627528|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
ATGGGCGGAAGGAGGACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCA
ACAACGACAGCAGCAGCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGT
GTACGTTAGAGGAGCTGTACAGAGGAACCACCAAGCACGTGGACGTGCAG
GCAGGCACGAGAAAAAAAACGTTTCGTGTAGAGGTCAAACGGGGATGGAA
GGCCGGAACTCGTATTCACTACGCCGCCTCTCCCTCCGGCCCGCCCTCTT
TCGCGCCCTCCCCTCCCTTCCCTCCAGTCACCTTCGTGCTCAGCGAGGCG
AGGCACCGGTACTTTAGCAGAAGGGGAGACGATCTGGTGTGGCGAAAGGG
GCTCAGTAAAGCACAGGCCGCCAAAGACATTCTGGTGCGAGTCCCGCTTT
TGAATGGAAAGGAGGCGAAGGTGAAGGTGAAGGCAGGTAGTGTGCCTTTC
GATGGGACGGTGCGGAGCCTGCGGGAGAAGGGGGGGGGGATGCCAAAGAA
GGCTGGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTACAAAAATAGA
TTGTAAGTACTATAGCTAGGCAGGGAGGGAGGGAGGGAGGGAGAGAGGGA
GGAGGCCCGCGCGAGCCCAGGAAGCATCCCTTGAAAAAGTGGAGATGGAG
ACGCCGGGCGTAGCGGTTATAAAGGAGATTATGTAGAGGAGAGACTCAGG
GGATGGTTGGAAAGCAGGCGATTCGATCCGTTCATCCATCCAATCAAGCA
AGAGGTATTTATGCCCCGTCAGGACCTAGCGATAGATGTATAATTGACGT
GATTGACGTATCAGCCGACAAGTCTGACATAATTTTTTTAAAAATGTAAA
GCCCAGTTCTCTAAATATGAGCGCGCGACTCCGAAATCTAATGCATATTT
ATAATTAGAATGTCTCATTTTTTGGTTTTTCTTTTGCATTTTAAGGAAAA
AGGTTCTAAATTTCGTGACGATTATTCGTCGAGACATTGATTATGGGGCA
TTGAGCCTTGTATTACAGGTCGATGCCCCCCTGCCCTCCTTCCATCTGCT
CCCTTTCTCTGTCTCGCTAGCTGTCCTTCTGTCTTTCTCTGTCTCGCAAG
CTGTCCTTCTGTCCTTCTGTCTTTCTCTTTTTCTCTTTTCCTTTTTCTCA
CCCCCTCCGGTCCTGTTTCTATGTCTCTCTCTGTCTCTCTCTGTCTCCCT
CTTTTTCTCTGTCTTTCTCTGTCCCGCTCTTTCTGTGTTCGGTCATTCTG
ATAATTCCCCTCAAGGGAGGGTCAGATTTCATGAAGATAAACAACATACA
TACAAAGATAGAAGTAAGTCTACAGACGGCGAACTCACCAAAAAAATACA
GACATGCAGGCACACAGTCACACAGACGCTTCACAAACACAAGCCCAATT
CTCCCTCTCATCCTCCACGACACGGCTTCCTTCCCTCCTTCTCTTCATCC
GCCAGCTCTACATAGACCTACGAGGTTCATGCAATGGTGGAAAGTCCTTA
CCCATTTTCACCTTAATCAAAGTCAATTCTCGGCGCGCTGTCTCCCACCT
CCTCTATTCCCGACCCTCACTCATCCTCCACCTCATTTATCCCCAACCAT
CTCTCATTCCATTTATAGGGGTGTCTCTCGTTCAGGTCTCTCATCCTTCA
CTCCTTCGTCACTAACATACACTCATCATTCAAAACCCGGGAACGGCATC
ATGAACAGCGGCATCATCTCAAATTATTCCCGCAGCAATAGCACCCGATG
ATCTGCCTTTCTCAGACCTCATTACAGCGTGAAAAGTTGTCAACCAACAA
TGAAATCATCACTCATGCCACCATGCGCTCCTTGACCCAAAGATAAAACA
TAAGACAGCTATAGCTCCTCTCCCCCTCCCTCCTCCCTCCCTCCCTCCGC
CATCGTTCTACTTGGCAGCGGCGAACCACCCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|627528 >mRNA_1165-protein ID=mRNA_1165-protein|Name=jgi.p|Nanoce1779_2|627528|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MGGRRTTRSRARGFQQQQRQQQQQQPAKQVKLVCTLEELYRGTTKHVDVQ
AGTRKKTFRVEVKRGWKAGTRIHYAASPSGPPSFAPSPPFPPVTFVLSEA
RHRYFSRRGDDLVWRKGLSKAQAAKDILVRVPLLNGKEAKVKVKAGSVPF
DGTVRSLREKGGGMPKKAGGFGDLIVELVVQK* back to topmRNA from alignment at scaffold_2:1387983..1390577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1165 ID=mRNA_1165|Name=jgi.p|Nanoce1779_2|627528|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp|location=Sequence derived from alignment at scaffold_2:1387983..1390577- (Nannochloropsis oceanica)
ATGGGCGGAAGGAGGACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCA
ACAACGACAGCAGCAGCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGT
GTACGTTAGAGGAGCTGTACAGAGGAACCACCAAGCACGTGGACGTGCAG
GCAGGCACGAGGTAAGGAGGGAGGAGGCGAGGGAGGGAAGGATGGAAGGA
GCTGGATAAGAGCACCTTCAAGCATTAGGGTGTGGGTTGTAGGATGGTAA
AAGAGGGAGGAGTGAAGGGAGGGAGGGAGGGAGGGATGACAGAGTGTCAG
AAAAGTGTTAAATCCCTTCCACGTATCGCCCATATCACTGATACTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCTCCCCCTCCATTCGCAG
AAAAAAAACGTTTCGTGTAGAGGTCAAACGGGGATGGAAGGCCGGAACTC
GTATTCACTACGCCGCCTCTCCCTCCGGCCCGCCCTCTTTCGCGCCCTCC
CCTCCCTTCCCTCCAGTCACCTTCGTGCTCAGCGAGGCGAGGCACCGGTA
CTTTAGCAGAAGGGGAGACGATCTGGTGTGGCGAAAGGGGCTCAGTAAAG
CACAGGTTGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGAAGGAGGGGGGGAGGGGAGGAGGGAGGAAAGGGAGGAG
GGAGGGAGGGAGGGAGGAAAGGAAGGACGCCCGCGCTTTCAACTCCTTCG
ACTGCCTCCTACCTTCTTTCCTTCCCTCCCTTCCACCTTTGCAGAGGGAG
GGAGGGAAAAAGGGAACCCACACTCAACTCCTCCGTCTTTCCTTCCCTCC
CTTCCCCCCCTCCCTTCCCCCTTCGCAGGCCGCCAAAGACATTCTGGTGC
GAGTCCCGCTTTTGAATGGAAAGGAGGCGAAGGTGAAGGTGAAGGCAGGT
AGTGTGCCTTTCGATGGGACGGTGCGGAGCCTGCGGGAGAAGGGGGGGGG
GATGCCAAAGAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAG
GGAAGGAAGAGTCGAATACTGACGTGTGATGAAATACACACCCTCGCTCT
TTCCTTCACAGGCTGGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTA
CAAAAATAGATTGTAAGTACTATAGCTAGGCAGGGAGGGAGGGAGGGAGG
GAGAGAGGGAGGAGGCCCGCGCGAGCCCAGGAAGCATCCCTTGAAAAAGT
GGAGATGGAGACGCCGGGCGTAGCGGTTATAAAGGAGATTATGTAGAGGA
GAGACTCAGGGGATGGTTGGAAAGCAGGCGATTCGATCCGTTCATCCATC
CAATCAAGCAAGAGGTATTTATGCCCCGTCAGGACCTAGCGATAGATGTA
TAATTGACGTGATTGACGTATCAGCCGACAAGTCTGACATAATTTTTTTA
AAAATGTAAAGCCCAGTTCTCTAAATATGAGCGCGCGACTCCGAAATCTA
ATGCATATTTATAATTAGAATGTCTCATTTTTTGGTTTTTCTTTTGCATT
TTAAGGAAAAAGGTTCTAAATTTCGTGACGATTATTCGTCGAGACATTGA
TTATGGGGCATTGAGCCTTGTATTACAGGTCGATGCCCCCCTGCCCTCCT
TCCATCTGCTCCCTTTCTCTGTCTCGCTAGCTGTCCTTCTGTCTTTCTCT
GTCTCGCAAGCTGTCCTTCTGTCCTTCTGTCTTTCTCTTTTTCTCTTTTC
CTTTTTCTCACCCCCTCCGGTCCTGTTTCTATGTCTCTCTCTGTCTCTCT
CTGTCTCCCTCTTTTTCTCTGTCTTTCTCTGTCCCGCTCTTTCTGTGTTC
GGTCATTCTGATAATTCCCCTCAAGGGAGGGTCAGATTTCATGAAGATAA
ACAACATACATACAAAGATAGAAGTAAGTCTACAGACGGCGAACTCACCA
AAAAAATACAGACATGCAGGCACACAGTCACACAGACGCTTCACAAACAC
AAGCCCAATTCTCCCTCTCATCCTCCACGACACGGCTTCCTTCCCTCCTT
CTCTTCATCCGCCAGCTCTACATAGACCTACGAGGTTCATGCAATGGTGG
AAAGTCCTTACCCATTTTCACCTTAATCAAAGTCAATTCTCGGCGCGCTG
TCTCCCACCTCCTCTATTCCCGACCCTCACTCATCCTCCACCTCATTTAT
CCCCAACCATCTCTCATTCCATTTATAGGGGTGTCTCTCGTTCAGGTCTC
TCATCCTTCACTCCTTCGTCACTAACATACACTCATCATTCAAAACCCGG
GAACGGCATCATGAACAGCGGCATCATCTCAAATTATTCCCGCAGCAATA
GCACCCGATGATCTGCCTTTCTCAGACCTCATTACAGCGTGAAAAGTTGT
CAACCAACAATGAAATCATCACTCATGCCACCATGCGCTCCTTGACCCAA
AGATAAAACATAAGACAGCTATAGCTCCTCTCCCCCTCCCTCCTCCCTCC
CTCCCTCCGCCATCGTTCTACTTGGCAGCGGCGAACCACCCCCCC back to topCoding sequence (CDS) from alignment at scaffold_2:1387983..1390577- >mRNA_1165 ID=mRNA_1165|Name=jgi.p|Nanoce1779_2|627528|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_2:1387983..1390577- (Nannochloropsis oceanica)
GCTGGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTACAAAAATAGGC
CGCCAAAGACATTCTGGTGCGAGTCCCGCTTTTGAATGGAAAGGAGGCGA
AGGTGAAGGTGAAGGCAGGTAGTGTGCCTTTCGATGGGACGGTGCGGAGC
CTGCGGGAGAAGGGGGGGGGGATGCCAAAGAAGAAAAAAAACGTTTCGTG
TAGAGGTCAAACGGGGATGGAAGGCCGGAACTCGTATTCACTACGCCGCC
TCTCCCTCCGGCCCGCCCTCTTTCGCGCCCTCCCCTCCCTTCCCTCCAGT
CACCTTCGTGCTCAGCGAGGCGAGGCACCGGTACTTTAGCAGAAGGGGAG
ACGATCTGGTGTGGCGAAAGGGGCTCAGTAAAGCACAGATGGGCGGAAGG
AGGACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCAACAACGACAGCA
GCAGCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGTGTACGTTAGAGG
AGCTGTACAGAGGAACCACCAAGCACGTGGACGTGCAGGCAGGCACGAGG
CTGGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTACAAAAATAGGCC
GCCAAAGACATTCTGGTGCGAGTCCCGCTTTTGAATGGAAAGGAGGCGAA
GGTGAAGGTGAAGGCAGGTAGTGTGCCTTTCGATGGGACGGTGCGGAGCC
TGCGGGAGAAGGGGGGGGGGATGCCAAAGAAGAAAAAAAACGTTTCGTGT
AGAGGTCAAACGGGGATGGAAGGCCGGAACTCGTATTCACTACGCCGCCT
CTCCCTCCGGCCCGCCCTCTTTCGCGCCCTCCCCTCCCTTCCCTCCAGTC
ACCTTCGTGCTCAGCGAGGCGAGGCACCGGTACTTTAGCAGAAGGGGAGA
CGATCTGGTGTGGCGAAAGGGGCTCAGTAAAGCACAGATGGGCGGAAGGA
GGACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCAACAACGACAGCAG
CAGCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGTGTACGTTAGAGGA
GCTGTACAGAGGAACCACCAAGCACGTGGACGTGCAGGCAGGCACGAGGC
TGGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTACAAAAATAGGCCG
CCAAAGACATTCTGGTGCGAGTCCCGCTTTTGAATGGAAAGGAGGCGAAG
GTGAAGGTGAAGGCAGGTAGTGTGCCTTTCGATGGGACGGTGCGGAGCCT
GCGGGAGAAGGGGGGGGGGATGCCAAAGAAGAAAAAAAACGTTTCGTGTA
GAGGTCAAACGGGGATGGAAGGCCGGAACTCGTATTCACTACGCCGCCTC
TCCCTCCGGCCCGCCCTCTTTCGCGCCCTCCCCTCCCTTCCCTCCAGTCA
CCTTCGTGCTCAGCGAGGCGAGGCACCGGTACTTTAGCAGAAGGGGAGAC
GATCTGGTGTGGCGAAAGGGGCTCAGTAAAGCACAGATGGGCGGAAGGAG
GACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCAACAACGACAGCAGC
AGCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGTGTACGTTAGAGGAG
CTGTACAGAGGAACCACCAAGCACGTGGACGTGCAGGCAGGCACGAGGCT
GGGGGCTTTGGGGATTTGATTGTGGAACTTGTGGTACAAAAATAGGCCGC
CAAAGACATTCTGGTGCGAGTCCCGCTTTTGAATGGAAAGGAGGCGAAGG
TGAAGGTGAAGGCAGGTAGTGTGCCTTTCGATGGGACGGTGCGGAGCCTG
CGGGAGAAGGGGGGGGGGATGCCAAAGAAGAAAAAAAACGTTTCGTGTAG
AGGTCAAACGGGGATGGAAGGCCGGAACTCGTATTCACTACGCCGCCTCT
CCCTCCGGCCCGCCCTCTTTCGCGCCCTCCCCTCCCTTCCCTCCAGTCAC
CTTCGTGCTCAGCGAGGCGAGGCACCGGTACTTTAGCAGAAGGGGAGACG
ATCTGGTGTGGCGAAAGGGGCTCAGTAAAGCACAGATGGGCGGAAGGAGG
ACGACTCGATCCCGTGCTCGTGGGTTCCAGCAGCAACAACGACAGCAGCA
GCAGCAGCAGCCAGCTAAGCAGGTGAAGCTGGTGTGTACGTTAGAGGAGC
TGTACAGAGGAACCACCAAGCACGTGGACGTGCAGGCAGGCACGAG back to top
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