jgi.p|Nanoce1779_2|627527, mRNA_1163 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627527
Unique Name	mRNA_1163
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2360
Alignment location	scaffold_2:1387060..1389419 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627613
Track	FilteredModels2
ProteinId	627527

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1387060..1389419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627527	gene_1163	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627527	mRNA_1163-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1163	CDS_1163	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1387060..1389419+
coding sequence from alignment at scaffold_2:1387060..1389419+

mRNA sequence

>mRNA_1163 ID=mRNA_1163|Name=jgi.p|Nanoce1779_2|627527|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp
GCAGCAGCAGCAGCAGCAGCAGTGATGGGAGCGTTCGTGACTTGGGGACG
TATGGTGGACCTCCGAAACGGCGCCAGCAGAAGCGAAAGTGCAATTCACT
CACTGGCAACCGCAGGAGTAGCTTCACCAGCGACGGGAACTGCAACAGGA
ACACTAGTACTGCCACCACCACCAGCAGCATCAGCAGCGATGGCTGTAAT
TTTGTCACTGGAATGTACGACATAGAGGCAAACGATTGCAGGCAGGGAGC
TTACGTGGTGGGCTTAGGTGAGCAGACCCTGAAATCCTTAGGCCCCTTGA
CCTCAGCGGGGCGAGCTAATTTCCAGCAGCAGCTGCTGCAGGCATGGCCG
CAGCAGCACCAGCAGTACCAGCAGGCTCTTTGCACAGACTGTGGAGGAGA
GACCTCAGATGAGGAAGTTGTAGACGAGAAGTCGATGGTGTGGAGCCATT
TGGAAGGGCAGATGCAGCAGCATCCGCAGCGGAGTCAGAGCATTGGAGAT
TTCCAGTCCACCCTCCTTTCACTCGCAGCTGTACCTTCTCAAGCCCCTAT
TCTGACCGGCAGCATCGATGCCTGTGCGCTCAAGCAGCACGCGATGACGT
TGAAGATAGAGGATGGGGAGGAAGATGACGAATGCAAGGACGAGGGAGGG
GCGGGAGATTTCGATGACCTGATGCGGTATGGATTTGACTGGGGCTTGAT
TACACCTTCTCCCCTTATGCGTGCGGATGCGGCCAGTTCTGGCGTTGCAT
CCTCGCCGTTGCTGTCACTGACGAGCATGGCAGCCGTCGTGACAACGACG
ACTACAACCTCCTCCTCCACATCCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCTCTTCCCTCCTCCGCAAACTCGTTCATTGCCTGCTTGCCAATGAATG
CACACTTTTATGGGGGGGGGGGGGGGGGGGTGGTTCGCCGCTGCCAAGTA
GAACGATGGCGGAGGGAGGGAGGGAGGAGGGAGGGGGAGAGGAGCTATAG
CTGTCTTATGTTTTATCTTTGGGTCAAGGAGCGCATGGTGGCATGAGTGA
TGATTTCATTGTTGGTTGACAACTTTTCACGCTGTAATGAGGTCTGAGAA
AGGCAGATCATCGGGTGCTATTGCTGCGGGAATAATTTGAGATGATGCCG
CTGTTCATGATGCCGTTCCCGGGTTTTGAATGATGAGTGTATGTTAGTGA
CGAAGGAGTGAAGGATGAGAGACCTGAACGAGAGACACCCCTATAAATGG
AATGAGAGATGGTTGGGGATAAATGAGGTGGAGGATGAGTGAGGGTCGGG
AATAGAGGAGGTGGGAGACAGCGCGCCGAGAATTGACTTTGATTAAGGTG
AAAATGGGTAAGGACTTTCCACCATTGCATGAACCTCGTAGGTCTATGTA
GAGCTGGCGGATGAAGAGAAGGAGGGAAGGAAGCCGTGTCGTGGAGGATG
AGAGGGAGAATTGGGCTTGTGTTTGTGAAGCGTCTGTGTGACTGTGTGCC
TGCATGTCTGTATTTTTTTGGTGAGTTCGCCGTCTGTAGACTTACTTCTA
TCTTTGTATGTATGTTGTTTATCTTCATGAAATCTGACCCTCCCTTGAGG
GGAATTATCAGAATGACCGAACACAGAAAGAGCGGGACAGAGAAAGACAG
AGAAAAAGAGGGAGACAGAGAGAGACAGAGAGAGACATAGAAACAGGACC
GGAGGGGGTGAGAAAAAGGAAAAGAGAAAAAGAGAAAGACAGAAGGACAG
AAGGACAGCTTGCGAGACAGAGAAAGACAGAAGGACAGCTAGCGAGACAG
AGAAAGGGAGCAGATGGAAGGAGGGCAGGGGGGCATCGACCTGTAATACA
AGGCTCAATGCCCCATAATCAATGTCTCGACGAATAATCGTCACGAAATT
TAGAACCTTTTTCCTTAAAATGCAAAAGAAAAACCAAAAAATGAGACATT
CTAATTATAAATATGCATTAGATTTCGGAGTCGCGCGCTCATATTTAGAG
AACTGGGCTTTACATTTTTAAAAAAATTATGTCAGACTTGTCGGCTGATA
CGTCAATCACGTCAATTATACATCTATCGCTAGGTCCTGACGGGGCATAA
ATACCTCTTGCTTGATTGGATGGATGAACGGATCGAATCGCCTGCTTTCC
AACCATCCCCTGAGTCTCTCCTCTACATAATCTCCTTTATAACCGCTACG
CCCGGCGTCTCCATCTCCACTTTTTCAAGGGATGCTTCCTGGGCTCGCGC
GGGCCTCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTGCCTAGCTATAGT
ACTTACAATCTATTTTTGTACCACAAGTTCCACAATCAAATCCCCAAAGC
CCCCAGCCTG

protein sequence of jgi.p|Nanoce1779_2|627527

>mRNA_1163-protein ID=mRNA_1163-protein|Name=jgi.p|Nanoce1779_2|627527|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MYDIEANDCRQGAYVVGLGEQTLKSLGPLTSAGRANFQQQLLQAWPQQHQ
QYQQALCTDCGGETSDEEVVDEKSMVWSHLEGQMQQHPQRSQSIGDFQST
LLSLAAVPSQAPILTGSIDACALKQHAMTLKIEDGEEDDECKDEGGAGDF
DDLMRYGFDWGLITPSPLMRADAASSGVASSPLLSLTSMAAVVTTTTTTS
SSTSSSSSSSSSPPLPSSANSFIACLPMNAHFYGGGGGGVVRRCQVERWR
REGGRREGERSYSCLMFYLWVKERMVA*

mRNA from alignment at scaffold_2:1387060..1389419+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1163 ID=mRNA_1163|Name=jgi.p|Nanoce1779_2|627527|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp|location=Sequence derived from alignment at scaffold_2:1387060..1389419+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGTGATGGGAGCGTTCGTGACTTGGGGACG
TATGGTGGACCTCCGAAACGGCGCCAGCAGAAGCGAAAGTGCAATTCACT
CACTGGCAACCGCAGGAGTAGCTTCACCAGCGACGGGAACTGCAACAGGA
ACACTAGTACTGCCACCACCACCAGCAGCATCAGCAGCGATGGCTGTAAT
TTTGTCACTGGAATGTACGACATAGAGGCAAACGATTGCAGGCAGGGAGC
TTACGTGGTGGGCTTAGGTGAGCAGACCCTGAAATCCTTAGGCCCCTTGA
CCTCAGCGGGGCGAGCTAATTTCCAGCAGCAGCTGCTGCAGGCATGGCCG
CAGCAGCACCAGCAGTACCAGCAGGCTCTTTGCACAGACTGTGGAGGAGA
GACCTCAGATGAGGAAGTTGTAGACGAGAAGTCGATGGTGTGGAGCCATT
TGGAAGGGCAGATGCAGCAGCATCCGCAGCGGAGTCAGAGCATTGGAGAT
TTCCAGTCCACCCTCCTTTCACTCGCAGCTGTACCTTCTCAAGCCCCTAT
TCTGACCGGCAGCATCGATGCCTGTGCGCTCAAGCAGCACGCGATGACGT
TGAAGATAGAGGATGGGGAGGAAGATGACGAATGCAAGGACGAGGGAGGG
GCGGGAGATTTCGATGACCTGATGCGGTATGGATTTGACTGGGGCTTGAT
TACACCTTCTCCCCTTATGCGTGCGGATGCGGCCAGTTCTGGCGTTGCAT
CCTCGCCGTTGCTGTCACTGACGAGCATGGCAGCCGTCGTGACAACGACG
ACTACAACCTCCTCCTCCACATCCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCTCTTCCCTCCTCCGCAAACTCGTTCATTGCCTGCTTGCCAATGAATG
CACACTTTTATGGGGGGGGGGGGGGGGGGGTGGTTCGCCGCTGCCAAGTA
GAACGATGGCGGAGGGAGGGAGGGAGGAGGGAGGGGGAGAGGAGCTATAG
CTGTCTTATGTTTTATCTTTGGGTCAAGGAGCGCATGGTGGCATGAGTGA
TGATTTCATTGTTGGTTGACAACTTTTCACGCTGTAATGAGGTCTGAGAA
AGGCAGATCATCGGGTGCTATTGCTGCGGGAATAATTTGAGATGATGCCG
CTGTTCATGATGCCGTTCCCGGGTTTTGAATGATGAGTGTATGTTAGTGA
CGAAGGAGTGAAGGATGAGAGACCTGAACGAGAGACACCCCTATAAATGG
AATGAGAGATGGTTGGGGATAAATGAGGTGGAGGATGAGTGAGGGTCGGG
AATAGAGGAGGTGGGAGACAGCGCGCCGAGAATTGACTTTGATTAAGGTG
AAAATGGGTAAGGACTTTCCACCATTGCATGAACCTCGTAGGTCTATGTA
GAGCTGGCGGATGAAGAGAAGGAGGGAAGGAAGCCGTGTCGTGGAGGATG
AGAGGGAGAATTGGGCTTGTGTTTGTGAAGCGTCTGTGTGACTGTGTGCC
TGCATGTCTGTATTTTTTTGGTGAGTTCGCCGTCTGTAGACTTACTTCTA
TCTTTGTATGTATGTTGTTTATCTTCATGAAATCTGACCCTCCCTTGAGG
GGAATTATCAGAATGACCGAACACAGAAAGAGCGGGACAGAGAAAGACAG
AGAAAAAGAGGGAGACAGAGAGAGACAGAGAGAGACATAGAAACAGGACC
GGAGGGGGTGAGAAAAAGGAAAAGAGAAAAAGAGAAAGACAGAAGGACAG
AAGGACAGCTTGCGAGACAGAGAAAGACAGAAGGACAGCTAGCGAGACAG
AGAAAGGGAGCAGATGGAAGGAGGGCAGGGGGGCATCGACCTGTAATACA
AGGCTCAATGCCCCATAATCAATGTCTCGACGAATAATCGTCACGAAATT
TAGAACCTTTTTCCTTAAAATGCAAAAGAAAAACCAAAAAATGAGACATT
CTAATTATAAATATGCATTAGATTTCGGAGTCGCGCGCTCATATTTAGAG
AACTGGGCTTTACATTTTTAAAAAAATTATGTCAGACTTGTCGGCTGATA
CGTCAATCACGTCAATTATACATCTATCGCTAGGTCCTGACGGGGCATAA
ATACCTCTTGCTTGATTGGATGGATGAACGGATCGAATCGCCTGCTTTCC
AACCATCCCCTGAGTCTCTCCTCTACATAATCTCCTTTATAACCGCTACG
CCCGGCGTCTCCATCTCCACTTTTTCAAGGGATGCTTCCTGGGCTCGCGC
GGGCCTCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTGCCTAGCTATAGT
ACTTACAATCTATTTTTGTACCACAAGTTCCACAATCAAATCCCCAAAGC
CCCCAGCCTG

Coding sequence (CDS) from alignment at scaffold_2:1387060..1389419+

>mRNA_1163 ID=mRNA_1163|Name=jgi.p|Nanoce1779_2|627527|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_2:1387060..1389419+ (Nannochloropsis oceanica)
ATGTACGACATAGAGGCAAACGATTGCAGGCAGGGAGCTTACGTGGTGGG
CTTAGGTGAGCAGACCCTGAAATCCTTAGGCCCCTTGACCTCAGCGGGGC
GAGCTAATTTCCAGCAGCAGCTGCTGCAGGCATGGCCGCAGCAGCACCAG
CAGTACCAGCAGGCTCTTTGCACAGACTGTGGAGGAGAGACCTCAGATGA
GGAAGTTGTAGACGAGAAGTCGATGGTGTGGAGCCATTTGGAAGGGCAGA
TGCAGCAGCATCCGCAGCGGAGTCAGAGCATTGGAGATTTCCAGTCCACC
CTCCTTTCACTCGCAGCTGTACCTTCTCAAGCCCCTATTCTGACCGGCAG
CATCGATGCCTGTGCGCTCAAGCAGCACGCGATGACGTTGAAGATAGAGG
ATGGGGAGGAAGATGACGAATGCAAGGACGAGGGAGGGGCGGGAGATTTC
GATGACCTGATGCGGTATGGATTTGACTGGGGCTTGATTACACCTTCTCC
CCTTATGCGTGCGGATGCGGCCAGTTCTGGCGTTGCATCCTCGCCGTTGC
TGTCACTGACGAGCATGGCAGCCGTCGTGACAACGACGACTACAACCTCC
TCCTCCACATCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCTCTTCCCTC
CTCCGCAAACTCGTTCATTGCCTGCTTGCCAATGAATGCACACTTTTATG
GGGGGGGGGGGGGGGGGGTGGTTCGCCGCTGCCAAGTAGAACGATGGCGG
AGGGAGGGAGGGAGGAGGGAGGGGGAGAGGAGCTATAGCTGTCTTATGTT
TTATCTTTGGGTCAAGGAGCGCATGGTGGCATGA

Synonyms

Publications