jgi.p|Nanoce1779_2|575572, mRNA_1162 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575572
Unique NamemRNA_1162
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1413
Alignment locationscaffold_2:1385126..1387068 -

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Properties
Property NameValue
TranscriptId575658
TrackFilteredModels2
ProteinId575572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1385126..1387068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575572gene_1162Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575572mRNA_1162-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1162CDS_1162Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1162 ID=mRNA_1162|Name=jgi.p|Nanoce1779_2|575572|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
TGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGTTGCTGCGGCTG
CTCGCGTCCTCCCCAGCCGTGCCTTCTTCATCCCATTCCCTCTCATCGTC
TCCCTCCCGACAGGATTCTTTTTCTTCCTGCTCCATAAACCACAGCGCTC
CTGCTGCCCATGCGTCCACCCTACCACGCTCTCCAGGACCCTCCCTCGCA
GCAATCGCCGAGCTCCTCTTGTTCTTGCCCACGATCGGAAAAGCCGTCAT
CGCCGCAGGCGACGGTGGCAAGCGCGCATCGTCCACACCCAAAGGCTCAA
TCGAGATAATACATGATGCATACGCCCCCTCATCCTCCACCACGTGTCTG
ACCGTTGCCCGGCCCCAAAACGCCTCCTCCTCATGCCTTCCCACGCACTC
CACGTCCATGGTCATTTCACCCACTGGCGTGGCGGCGGTGAAGATAGCCT
GGCTCAGGCGGCCATAGAATTTATGTTGCGAGGCGGGAGTGAAGAGGGCC
CCCCATAGGAGGACAGGAAGCATCTTATGGTGGCTGAGGAGGGCGAGGGC
TTGGGGGACGGTCATGTGTGTGGAGTGGAAGAGGGGGTTGACACCCACTT
GGACGTGGCCTCCCTCGATGATGTAAAAGGCAACTGCCTTTTCAACACTC
GCGAAGTCCACATCACGGAATCCGGCGTGAAGGACACTGCCACTGCCGCT
GCTGCTGCTGCTGATACTGCTACTATCACTGCTAGAGTGCAGGATGACAG
GGCCATAAAGCGGCGTGCCTGCCGGGACATCGCGGGTGGGGGGCGGGCGC
TGCTGAACCCTGATGGCCGTGCCATGATCGAGTGCCAATGTCCGCACGAT
CTGGTTAAATGCCCCATGAGAACTGTCTTGCCGGTGCGTGCCCGAGACAA
GGCCCCAGGCGCGCAGGACAGCTATCGTCTTCTCCTTACACGTCTGGCCG
CGGTTGTGGAAATTGGCGAAGCCGTGCGACAGGTCTGTGGCCAGGCTGGA
GACCGGATAGTCAGCGGAGCGGGGACGTCGAAAAGACTTGGCAGTGCTAC
CGATGCTGGCAAGGGTGCTGGTTCCCCCCGTGCATCGCTCGGAGCAGCAC
CCCGACGGAGGTATCTCGCTGCTCCTGATGATATGGCAGTTGATATGGGC
CGTCGGTACGCCTGCTCCCTGCAGCGGGGGCGAGAGGCTCCCTAGATCGC
AGGCCATGGGGGCAGTCTCACAAGGAATGCTCTCCGTGGGCATAGGCGAG
ATCGGGGCTTTGCGTGGCCGTCCCTGCGTGCGCACCTGTTCAATGCAGGT
TATGCCAAGCTTGGTGCATCTGTCACAGGAGGGCTCAGCACGATCGCACC
TTATCTTGGCACTCCGGCATGCCGTGCACGTATTTTTTGAGACGCGACTT
GGCGCCATGCCTG
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protein sequence of jgi.p|Nanoce1779_2|575572

>mRNA_1162-protein ID=mRNA_1162-protein|Name=jgi.p|Nanoce1779_2|575572|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MVAEEGEGLGDGHVCGVEEGVDTHLDVASLDDVKGNCLFNTREVHITESG
VKDTATAAAAAADTATITARVQDDRAIKRRACRDIAGGGRALLNPDGRAM
IECQCPHDLVKCPMRTVLPVRARDKAPGAQDSYRLLLTRLAAVVEIGEAV
RQVCGQAGDRIVSGAGTSKRLGSATDAGKGAGSPRASLGAAPRRRYLAAP
DDMAVDMGRRYACSLQRGREAP*
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mRNA from alignment at scaffold_2:1385126..1387068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1162 ID=mRNA_1162|Name=jgi.p|Nanoce1779_2|575572|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_2:1385126..1387068- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGTTGCTGCGGCTG
CTCGCGTCCTCCCCAGCCGTGCCTTCTTCATCCCATTCCCTCTCATCGTC
TCCCTCCCGACAGGATTCTTTTTCTTCCTGCTCCATAAACCACAGCGCTC
CTGCTGCCCATGCGTCCACCCTACCACGCTCTCCAGGACCCTCCCTCGCA
GCAATCGCCGAGCTCCTCTTGTTCTTGCCCACGATCGGAAAAGCCGTCAT
CGCCGCAGGCGACGGTGGCAAGCGCGCATCGTCCACACCCAAAGGCTCAA
TCGAGATAATACATGATGCATACGCCCCCTCATCCTCCACCACGTGTCTG
ACCGTTGCCCGGCCCCAAAACGCCTCCTCCTCATGCCTTCCCACGCACTC
CACGTCCATGGTCATTTCACCCACTGGCGTGGCGGCGGTGAAGATAGCCT
GGCTCAGGCGGCCATAGAATTTATGTTGCGAGGCGGGAGTGAAGAGGGCC
CCCCATAGGAGGACAGGAAGCATCTTATGGTGGCTGAGGAGGGCGAGGGC
TTGGGGGACGGTCATGTGTGTGGAGTGGAAGAGGGGGTTGACACCCACTT
GGACGTGGCCTCCCTCGATGATGTAAAAGGCAACTGCCTTTTCAACACTC
GCGAAGTCCACATCACGGAATCCGGCGTGAAGGACACTGCCACTGCCGCT
GCTGCTGCTGCTGATACTGCTACTATCACTGCTAGAGTGCAGGATGACAG
GGCCATAAAGCGGCGTGCCTGCCGGGACATCGCGGGTGGGGGGCGGGCGC
TGCTGAACCCTGATGGCCGTGCCATGATCGAGTGCCAATGTCCGCACGAT
CTGGTTAAATGCCCCATGAGAACTGTCTTGCCGGTGCGTGCCCGAGACAA
GGCCCCAGGCGCGCCTATGGGAGAGAGGGTGGAAAGAGAGGATGAGTGAG
TGGGAGGGCATGGTAGGGGTTGGTGCTGGATAAGGCAGGATATTGTAAAA
AAGGGACGGGAGAGAGTAATGAACCGAGCTATACTTGACTTACAGGACAG
CTATCGTCTTCTCCTTACACGTCTGGCCGCGGTTGTGGAAATTGGCGAAG
CCGTGCGACAGGTCTGTGGCCAGGCTGGAGACCGGATAGTCAGCGGAGCG
GGGACGTCGAAAAGACTTGGCAGTGCTACCGATGCTGGCAAGGGTGCTGG
TTCCCCCCGTGCATCGCTCGGAGCAGCACCCCGACGGAGGTATCTCGCTG
CTCCTGATGATATGGCAGTTGATATGGGCCGTCGGTACGCCTGCTCCCTG
CAGCGGGGGCGAGAGGCTCCCTAGATCGCAGGCCATGGGGGCAGTCTCAC
AAGGAATGCTCTCCGTGGGCATAGGCGAGATCGGGGCTTTGCGTGGCCGT
CCCTGCGTGCGCACCTGTTCAATGCAGGTTATGCCAAGCTTGGTGCATCT
AAATCGGAAGCCGGGAAGGGGGAGTGGGGGAAACAGGGGAAAGGGAAGAG
TGGCGTGTCAGAGATGGGCTAAAGGAAGACAAAGCACGCCCATGCAGGAG
AGGAGACATCCTAGTTTACCAACTACAACACTCATTTGTGACATAATTTG
GAAAGTGAAGACAAGTCATCGCTGTGGTCGCGAAACTAGTCCAAGGCAGC
GCTCGTGTAACCCTTCCCGTCCCAGCCCACTTGACCACATCTCTTCAATT
TGTGCAAACCCCACCCCACTCCCTGTCCATCCATCGAGCATGCCTCCTAC
CTGTCACAGGAGGGCTCAGCACGATCGCACCTTATCTGTTAATATGCATT
TGTGGCATTTGTAAGCAGCCAACGTCTCCCCCCTTTAAACCACCAGCCCT
CACCCCGTATCCACCACCAAAAACCAGTGCTTACCTTGGCACTCCGGCAT
GCCGTGCACGTATTTTTTGAGACGCGACTTGGCGCCATGCCTG
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Coding sequence (CDS) from alignment at scaffold_2:1385126..1387068-

>mRNA_1162 ID=mRNA_1162|Name=jgi.p|Nanoce1779_2|575572|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_2:1385126..1387068- (Nannochloropsis oceanica)
AGGACAGCTATCGTCTTCTCCTTACACGTCTGGCCGCGGTTGTGGAAATT
GGCGAAGCCGTGCGACAGGTCTGTGGCCAGGCTGGAGACCGGATAGTCAG
CGGAGCGGGGACGTCGAAAAGACTTGGCAGTGCTACCGATGCTGGCAAGG
GTGCTGGTTCCCCCCGTGCATCGCTCGGAGCAGCACCCCGACGGAGGTAT
CTCGCTGCTCCTGATGATATGGCAGTTGATATGGGCCGTCGGTACGCCTG
CTCCCTGCAGCGGGGGCGAGAGGCTCCCTAGATGGTGGCTGAGGAGGGCG
AGGGCTTGGGGGACGGTCATGTGTGTGGAGTGGAAGAGGGGGTTGACACC
CACTTGGACGTGGCCTCCCTCGATGATGTAAAAGGCAACTGCCTTTTCAA
CACTCGCGAAGTCCACATCACGGAATCCGGCGTGAAGGACACTGCCACTG
CCGCTGCTGCTGCTGCTGATACTGCTACTATCACTGCTAGAGTGCAGGAT
GACAGGGCCATAAAGCGGCGTGCCTGCCGGGACATCGCGGGTGGGGGGCG
GGCGCTGCTGAACCCTGATGGCCGTGCCATGATCGAGTGCCAATGTCCGC
ACGATCTGGTTAAATGCCCCATGAGAACTGTCTTGCCGGTGCGTGCCCGA
GACAAGGCCCCAGGCGCGCAGGACAGCTATCGTCTTCTCCTTACACGTCT
GGCCGCGGTTGTGGAAATTGGCGAAGCCGTGCGACAGGTCTGTGGCCAGG
CTGGAGACCGGATAGTCAGCGGAGCGGGGACGTCGAAAAGACTTGGCAGT
GCTACCGATGCTGGCAAGGGTGCTGGTTCCCCCCGTGCATCGCTCGGAGC
AGCACCCCGACGGAGGTATCTCGCTGCTCCTGATGATATGGCAGTTGATA
TGGGCCGTCGGTACGCCTGCTCCCTGCAGCGGGGGCGAGAGGCTCCCTAG
ATGGTGGCTGAGGAGGGCGAGGGCTTGGGGGACGGTCATGTGTGTGGAGT
GGAAGAGGGGGTTGACACCCACTTGGACGTGGCCTCCCTCGATGATGTAA
AAGGCAACTGCCTTTTCAACACTCGCGAAGTCCACATCACGGAATCCGGC
GTGAAGGACACTGCCACTGCCGCTGCTGCTGCTGCTGATACTGCTACTAT
CACTGCTAGAGTGCAGGATGACAGGGCCATAAAGCGGCGTGCCTGCCGGG
ACATCGCGGGTGGGGGGCGGGCGCTGCTGAACCCTGATGGCCGTGCCATG
ATCGAGTGCCAATGTCCGCACGATCTGGTTAAATGCCCCATGAGAACTGT
CTTGCCGGTGCGTGCCCGAGACAAGGCCCCAGGCGCGC
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Synonyms
Publications