jgi.p|Nanoce1779_2|154330, mRNA_1161 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|154330
Unique Name	mRNA_1161
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1161
Alignment location	scaffold_2:1381851..1384415 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	154416
Track	FilteredModels2
ProteinId	154330

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1381851..1384415 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|154330	gene_1161	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|154330	mRNA_1161-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1161	CDS_1161	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1381851..1384415+
coding sequence from alignment at scaffold_2:1381851..1384415+

mRNA sequence

>mRNA_1161 ID=mRNA_1161|Name=jgi.p|Nanoce1779_2|154330|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
CGCCGCTGCCGGTCTTGCTTCTCACACAACCCAGTAGCCTCACCAATCAT
ATATCGACATCTACACCGACACACAGGCAATTTTTATCACGATGCTAGCT
TTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCACAGGCATCCG
TGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCA
GAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGGTGGTTGGTCTACCC
GCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAAA
GGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTGCGACATCGAGACGG
ACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATGCTGTGCTGGCCAAG
ATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTCGGCTCGCCCATCAT
GGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTTCGCGGACTTTTCTC
TCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCGAAGGAAGAG
GAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTCTCCTCCCCC
TCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAGCAGCGCCTG
TCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTACTGCCACTGCACCT
CCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCAGCAGATGCGTATGC
GTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGGCCAAGAGCC
TAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCGACAGGACAG
ACACCATTATAAACATGCAAGCAAATTGAAAAAATATCTGGGTGGAGTAA
AGGAGTAGATATGTTTGCGAGGAATGGGGAAGAGATACAGGGGAAGGGGA
GTAGAGAATGAAGAAAAAGAAAAGATTATTCGAGTCCTGTCATGGCAAAG
CATGGAGAGAGGAAGAAGAAACGTGCCAGGAGGGCACGAGACATGGAAAA
AAGGTGGCTGACTTGAAGGCAACCACGATGGAAAATCTGTGCTCAGGCCA
AGTGTTGGTTGCTCGTTTGTTCTTGTTGTCGTTGTGATTTATTGATTGAT
GCCGACTACAC

protein sequence of jgi.p|Nanoce1779_2|154330

>mRNA_1161-protein ID=mRNA_1161-protein|Name=jgi.p|Nanoce1779_2|154330|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLALASRRTAALAASTTGIRASLVRPTKATSTLSGSRGIGFATLPEHTVV
GLPALSPTMTHGNLALWHKKEGDDIGPGDVLCDIETDKATMAFEAQDDAV
LAKILVTEGASDIAVGSPIMVIVESKDDVAAFADFSLSNITPAPAAPAAA
KEEEASAPPPPPPTTASPPPPPPPPKPAAAPAAAAPVAPPPASATATTTA
TAPPPSPSPSSSSIPADAYAFKRWGTFSRGGALAKSLSKAQKAYVEAYGS
TGQTPL*

mRNA from alignment at scaffold_2:1381851..1384415+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1161 ID=mRNA_1161|Name=jgi.p|Nanoce1779_2|154330|organism=Nannochloropsis oceanica|type=mRNA|length=2565bp|location=Sequence derived from alignment at scaffold_2:1381851..1384415+ (Nannochloropsis oceanica)
CGCCGCTGCCGGTCTTGCTTCTCACACAACCCAGTAGCCTCACCAATCAT
ATATCGACATCTACACCGACACACAGGCAATTTTTATCACGATGCTAGCT
TTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCACAGGTACGCT
TGTTTATTGCTCCTTATCTCGTCGGCGAATGAAAGGGATCGCGAGCTGTT
GTTCGTGTGCTCTCTATTTCGGGGGTAGGGGGAAAGGGGGGGGTGGGGTT
GGGGGGGGGGATGCGTGATGTGTATTAGTTGAAATCATGGCCTCTGTGCC
TGTCCATGCTCTGTCTCGACCGCTTGCGGCACATACTATAGATTTTTGCC
CGTGTCGTTTGATTATGTCGAAGCGCTCTGTGCCTCCATCCCCACGAGTA
CTCACCTCCCAATCTCAACGCATCCATAGGCATCCGTGCGTCGCTCGTTC
GACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGATCGGTTTC
GCCACCCTCCCCGAGCATACGGTGGTTGGTCTACCCGGTACGTGTGGCGT
GACCAGAGGGTGGGAATGAAGGCGAATCGATGATACTCCTCCCGGCGGAA
GTGCCGATGATTGGTTGGTTGGATACTTTTTACAGAGACATCGATACCAC
AGTCTTTTTTGTGGCTAAATGATGGTGAAAAAGCCAGGTTGATGACTCAC
ATGCTTTTCTTCAGCTAACCATTACCATCCCTCTACACTGTATAGCCCTT
TCGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAAAGGTACG
CGAGGGGTCGATAAATAATATTGTGCCCTCAGCCCAATTCTTCCCGCGTT
TCCGTCGCATTCGTCGCCATTCCACCCCACTGATCACTCCCTCCCTCCCT
CCCTCCCTCCCTCCGCCCCACGTAGGAGGGCGATGATATTGGCCCAGGGG
ACGTGCTTTGCGACATCGAGACGGACAAGGCCACCATGGCGTTCGAAGCT
CAGGTATGGACACAACACGGGGAAAAAAAGGGAAGGATGGAGGGAGGAAG
GGGGGGTGGGACGGGGGTCACCGGGAGGCTCCGGTGTGGACAGGGGGGAA
GAGTAAAGGGAAGGACGGAGGAAAGAAGGTATGGAATGCAGGGGGAGAGG
GCACGGTGGAGGGAGGGGTTGGACAGAAGCTATAGGCCGTGCACTGTCAC
ATAGTTCTTTGTTTTGGAAAAATCAACAAACCAAGATGGAATATAATTTA
ATTTCTCATATCTCTTTTCTCCCACCTACTTTGTCGCTCTCTTCTAACAC
AGGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGAC
ATCGCCGTCGGCTCGCCCATCATGGTACCCCCACCTTTCTCTCCCCTTCT
CCCTTCCTCGCTCCCTCTCTCTCTATCCTTCCCTTCATCTGCCTGCCACT
CGTGCCCCCCCCCATCCTTCCTCCTTCTCGCAACCAACATCCGCTACGCA
TCCGCTGCCCAACCAACTTTCCTTTTGACCCTCCTTCCCTCCCTCCCTCC
CTCACACTCGCCTCCCCTCCCTCCTTCATTCCCTCCTTCCCCTCTTCCCC
ATCATCATCTCTCAGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTT
CGCGGACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCG
CAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACA
GCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGC
GGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTA
CTGCCACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCA
GCAGATGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGC
CTTGGCCAAGAGGTGAGGGTGGGAGGGAGGGAGGGAGGGGGGGGTTGGGT
ATATCACGGGGAAAATGCGGGCGTGTGCTGAAACATGATGTGCATATTTT
GGCTGTGAGTCAGAGTGTTTCACCGTACATACATAGAAAGAGGTATGGGT
TGGCTTCTCTATATGCTCCGTCATTCCTCCAACTTTGTGCACTCATTCTC
ACTCAATTCATCCCTCCTCCTTGCCCTTCATCCCTCTTCACCCTCCCTGC
AGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCGACAGG
ACAGACACCATTATAAACATGCAAGCAAATTGAAAAAATATCTGGGTGGA
GTAAAGGAGTAGATATGTTTGCGAGGAATGGGGAAGAGATACAGGGGAAG
GGGAGTAGAGAATGAAGAAAAAGAAAAGATTATTCGAGTCCTGTCATGGC
AAAGCATGGAGAGAGGAAGAAGAAACGTGCCAGGAGGGCACGAGACATGG
AAAAAAGGTGGCTGACTTGAAGGCAACCACGATGGAAAATCTGTGCTCAG
GCCAAGTGTTGGTTGCTCGTTTGTTCTTGTTGTCGTTGTGATTTATTGAT
TGATGCCGACTACAC

Coding sequence (CDS) from alignment at scaffold_2:1381851..1384415+

>mRNA_1161 ID=mRNA_1161|Name=jgi.p|Nanoce1779_2|154330|organism=Nannochloropsis oceanica|type=CDS|length=5397bp|location=Sequence derived from alignment at scaffold_2:1381851..1384415+ (Nannochloropsis oceanica)
ATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCAC
AGGCATCCGTGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCACCCTTT
CTGGAAGCAGAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGGTGGTT
GGTCTACCCGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTG
GCACAAAAAGGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTGCGACA
TCGAGACGGACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATGCTGTG
CTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTCGGCTC
GCCCATCATGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTTCGCGG
ACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCG
AAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTC
TCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAG
CAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTACTGCC
ACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCAGCAGA
TGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGG
CCAAGAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCG
ACAGGACAGACACCATTATAAATGCTAGCTTTAGCATCCCGCAGGACTGC
CGCCCTTGCTGCTTCTACCACAGGCATCCGTGCGTCGCTCGTTCGACCCA
CAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGATCGGTTTCGCCACC
CTCCCCGAGCATACGGTGGTTGGTCTACCCGCCCTTTCGCCGACCATGAC
CCATGGCAACCTGGCACTGTGGCACAAAAAGGAGGGCGATGATATTGGCC
CAGGGGACGTGCTTTGCGACATCGAGACGGACAAGGCCACCATGGCGTTC
GAAGCTCAGGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGC
AAGTGACATCGCCGTCGGCTCGCCCATCATGGTCATCGTTGAATCCAAAG
ATGACGTCGCCGCCTTCGCGGACTTTTCTCTCTCGAATATCACCCCTGCC
CCTGCTGCCCCCGCCGCAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCC
TCCTCCCCCGACAACAGCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGC
CAGCCGCCGCACCCGCGGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGT
GCTACTGCTACTACTACTGCCACTGCACCTCCTCCTTCACCTTCCCCTTC
CTCGTCTTCAATACCAGCAGATGCGTATGCGTTCAAGCGATGGGGCACTT
TCTCGAGGGGAGGGGCCTTGGCCAAGAGCCTAAGCAAGGCTCAAAAGGCG
TATGTTGAAGCCTACGGATCGACAGGACAGACACCATTATAAATGCTAGC
TTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCTACCACAGGCATCC
GTGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCACCCTTTCTGGAAGC
AGAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGGTGGTTGGTCTACC
CGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAA
AGGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTGCGACATCGAGACG
GACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATGCTGTGCTGGCCAA
GATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTCGGCTCGCCCATCA
TGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTTCGCGGACTTTTCT
CTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCGAAGGAAGA
GGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTCTCCTCCCC
CTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAGCAGCGCCT
GTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTACTGCCACTGCACC
TCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCAGCAGATGCGTATG
CGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGGCCAAGAGC
CTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACGGATCGACAGGACA
GACACCATTATAAATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTG
CTGCTTCTACCACAGGCATCCGTGCGTCGCTCGTTCGACCCACAAAGGCC
ACAAGCACCCTTTCTGGAAGCAGAGGGATCGGTTTCGCCACCCTCCCCGA
GCATACGGTGGTTGGTCTACCCGCCCTTTCGCCGACCATGACCCATGGCA
ACCTGGCACTGTGGCACAAAAAGGAGGGCGATGATATTGGCCCAGGGGAC
GTGCTTTGCGACATCGAGACGGACAAGGCCACCATGGCGTTCGAAGCTCA
GGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGACA
TCGCCGTCGGCTCGCCCATCATGGTCATCGTTGAATCCAAAGATGACGTC
GCCGCCTTCGCGGACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGC
CCCCGCCGCAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCC
CGACAACAGCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCC
GCACCCGCGGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGC
TACTACTACTGCCACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTT
CAATACCAGCAGATGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGG
GGAGGGGCCTTGGCCAAGAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGA
AGCCTACGGATCGACAGGACAGACACCATTATAAATGCTAGCTTTAGCAT
CCCGCAGGACTGCCGCCCTTGCTGCTTCTACCACAGGCATCCGTGCGTCG
CTCGTTCGACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGAT
CGGTTTCGCCACCCTCCCCGAGCATACGGTGGTTGGTCTACCCGCCCTTT
CGCCGACCATGACCCATGGCAACCTGGCACTGTGGCACAAAAAGGAGGGC
GATGATATTGGCCCAGGGGACGTGCTTTGCGACATCGAGACGGACAAGGC
CACCATGGCGTTCGAAGCTCAGGACGATGCTGTGCTGGCCAAGATCCTGG
TCACAGAAGGGGCAAGTGACATCGCCGTCGGCTCGCCCATCATGGTCATC
GTTGAATCCAAAGATGACGTCGCCGCCTTCGCGGACTTTTCTCTCTCGAA
TATCACCCCTGCCCCTGCTGCCCCCGCCGCAGCGAAGGAAGAGGAAGCGT
CTGCCCCTCCCCCTCCTCCCCCGACAACAGCCTCTCCTCCCCCTCCCCCT
CCTCCTCCCAAGCCAGCCGCCGCACCCGCGGCAGCAGCGCCTGTCGCTCC
TCCTCCTGCGAGTGCTACTGCTACTACTACTGCCACTGCACCTCCTCCTT
CACCTTCCCCTTCCTCGTCTTCAATACCAGCAGATGCGTATGCGTTCAAG
CGATGGGGCACTTTCTCGAGGGGAGGGGCCTTGGCCAAGAGCCTAAGCAA
GGCTCAAAAGGCGTATGTTGAAGCCTACGGATCGACAGGACAGACACCAT
TATAAATGCTAGCTTTAGCATCCCGCAGGACTGCCGCCCTTGCTGCTTCT
ACCACAGGCATCCGTGCGTCGCTCGTTCGACCCACAAAGGCCACAAGCAC
CCTTTCTGGAAGCAGAGGGATCGGTTTCGCCACCCTCCCCGAGCATACGG
TGGTTGGTCTACCCGCCCTTTCGCCGACCATGACCCATGGCAACCTGGCA
CTGTGGCACAAAAAGGAGGGCGATGATATTGGCCCAGGGGACGTGCTTTG
CGACATCGAGACGGACAAGGCCACCATGGCGTTCGAAGCTCAGGACGATG
CTGTGCTGGCCAAGATCCTGGTCACAGAAGGGGCAAGTGACATCGCCGTC
GGCTCGCCCATCATGGTCATCGTTGAATCCAAAGATGACGTCGCCGCCTT
CGCGGACTTTTCTCTCTCGAATATCACCCCTGCCCCTGCTGCCCCCGCCG
CAGCGAAGGAAGAGGAAGCGTCTGCCCCTCCCCCTCCTCCCCCGACAACA
GCCTCTCCTCCCCCTCCCCCTCCTCCTCCCAAGCCAGCCGCCGCACCCGC
GGCAGCAGCGCCTGTCGCTCCTCCTCCTGCGAGTGCTACTGCTACTACTA
CTGCCACTGCACCTCCTCCTTCACCTTCCCCTTCCTCGTCTTCAATACCA
GCAGATGCGTATGCGTTCAAGCGATGGGGCACTTTCTCGAGGGGAGGGGC
CTTGGCCAAGAGCCTAAGCAAGGCTCAAAAGGCGTATGTTGAAGCCTACG
GATCGACAGGACAGACACCATTATAAATGCTAGCTTTAGCATCCCGCAGG
ACTGCCGCCCTTGCTGCTTCTACCACAGGCATCCGTGCGTCGCTCGTTCG
ACCCACAAAGGCCACAAGCACCCTTTCTGGAAGCAGAGGGATCGGTTTCG
CCACCCTCCCCGAGCATACGGTGGTTGGTCTACCCGCCCTTTCGCCGACC
ATGACCCATGGCAACCTGGCACTGTGGCACAAAAAGGAGGGCGATGATAT
TGGCCCAGGGGACGTGCTTTGCGACATCGAGACGGACAAGGCCACCATGG
CGTTCGAAGCTCAGGACGATGCTGTGCTGGCCAAGATCCTGGTCACAGAA
GGGGCAAGTGACATCGCCGTCGGCTCGCCCATCATGGTCATCGTTGAATC
CAAAGATGACGTCGCCGCCTTCGCGGACTTTTCTCTCTCGAATATCACCC
CTGCCCCTGCTGCCCCCGCCGCAGCGAAGGAAGAGGAAGCGTCTGCCCCT
CCCCCTCCTCCCCCGACAACAGCCTCTCCTCCCCCTCCCCCTCCTCCTCC
CAAGCCAGCCGCCGCACCCGCGGCAGCAGCGCCTGTCGCTCCTCCTCCTG
CGAGTGCTACTGCTACTACTACTGCCACTGCACCTCCTCCTTCACCTTCC
CCTTCCTCGTCTTCAATACCAGCAGATGCGTATGCGTTCAAGCGATGGGG
CACTTTCTCGAGGGGAGGGGCCTTGGCCAAGAGCCTAAGCAAGGCTCAAA
AGGCGTATGTTGAAGCCTACGGATCGACAGGACAGACACCATTATAA

Synonyms

Publications