jgi.p|Nanoce1779_2|575566, mRNA_1160 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575566
Unique NamemRNA_1160
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length796
Alignment locationscaffold_2:1380261..1381056 -

Link to JBrowse

Properties
Property NameValue
TranscriptId575652
TrackFilteredModels2
ProteinId575566
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1380261..1381056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575566gene_1160Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575566mRNA_1160-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1160CDS_1160Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1160 ID=mRNA_1160|Name=jgi.p|Nanoce1779_2|575566|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
ACAGCACCTGCACATTAGGTGCCCTTTGTAGCATCATCCACGGCCTCATC
TTTTACGAAGTTAACAAGGTCGTGATTTAAAGATATGTCGCTCTCTCAGT
TCATTCAGGTGACAATCACGCCCTGTCTCCTCGTCTCGGCCATCGGGCTC
CTCCTTCTCTCCATGACTAACCGCTACACGCATCTCACCAATAGTATTCG
GCTGATGAAATGCAAGAACCTCAAGATTGTAATGTACAAGAGAATCCGCA
CATTGAAGTTCGCGATCCTTTCAGCGCTGCTTTCCGTCCTGTGCCTTTGT
GTACTAATGATATTTTTCTTTCAAGTGCTCGTGAGTAAGGGAAGTGAAGA
GAACGTCGTCATCATCATCCTCTTTACCTCAAGCCTCCTCTTTCTCTTGC
TCAGCCTGAGTCTCTTTACCTTTGACATGTTTGTCTCGTTGAACTCGATA
CACAAAAAACTTACGGCCGAGGGCGTGTTGCCCGTGTAAGTGGCAAGTCA
GGCAGCATTTGGCATAATAATGGAGAAATGAGCTGTCCCTGCTCCTGTTC
AATCCTCTCCCACGACCAAATAGGAGGTGATTTTTTTGATACTTTGATTA
ACCTCGTGCTTATGGTAGCAATAATTGTCAATATTTCTCAGCAACACGGC
GATACAAAAAAGAAATGTAGGACAGGCAGGAGAGCACGCCGCTGAAAGTC
GAATAGTTCAACACAGGAAAAGAGGGAGTGAATTTGAAGGAGGGGGAGAG
AATCAAGACAACTGTAAGAAAAGCAAAACCAAAACAGTTCCTTTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|575566

>mRNA_1160-protein ID=mRNA_1160-protein|Name=jgi.p|Nanoce1779_2|575566|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MSLSQFIQVTITPCLLVSAIGLLLLSMTNRYTHLTNSIRLMKCKNLKIVM
YKRIRTLKFAILSALLSVLCLCVLMIFFFQVLVSKGSEENVVIIILFTSS
LLFLLLSLSLFTFDMFVSLNSIHKKLTAEGVLPV*
back to top

mRNA from alignment at scaffold_2:1380261..1381056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1160 ID=mRNA_1160|Name=jgi.p|Nanoce1779_2|575566|organism=Nannochloropsis oceanica|type=mRNA|length=796bp|location=Sequence derived from alignment at scaffold_2:1380261..1381056- (Nannochloropsis oceanica)
ACAGCACCTGCACATTAGGTGCCCTTTGTAGCATCATCCACGGCCTCATC
TTTTACGAAGTTAACAAGGTCGTGATTTAAAGATATGTCGCTCTCTCAGT
TCATTCAGGTGACAATCACGCCCTGTCTCCTCGTCTCGGCCATCGGGCTC
CTCCTTCTCTCCATGACTAACCGCTACACGCATCTCACCAATAGTATTCG
GCTGATGAAATGCAAGAACCTCAAGATTGTAATGTACAAGAGAATCCGCA
CATTGAAGTTCGCGATCCTTTCAGCGCTGCTTTCCGTCCTGTGCCTTTGT
GTACTAATGATATTTTTCTTTCAAGTGCTCGTGAGTAAGGGAAGTGAAGA
GAACGTCGTCATCATCATCCTCTTTACCTCAAGCCTCCTCTTTCTCTTGC
TCAGCCTGAGTCTCTTTACCTTTGACATGTTTGTCTCGTTGAACTCGATA
CACAAAAAACTTACGGCCGAGGGCGTGTTGCCCGTGTAAGTGGCAAGTCA
GGCAGCATTTGGCATAATAATGGAGAAATGAGCTGTCCCTGCTCCTGTTC
AATCCTCTCCCACGACCAAATAGGAGGTGATTTTTTTGATACTTTGATTA
ACCTCGTGCTTATGGTAGCAATAATTGTCAATATTTCTCAGCAACACGGC
GATACAAAAAAGAAATGTAGGACAGGCAGGAGAGCACGCCGCTGAAAGTC
GAATAGTTCAACACAGGAAAAGAGGGAGTGAATTTGAAGGAGGGGGAGAG
AATCAAGACAACTGTAAGAAAAGCAAAACCAAAACAGTTCCTTTCA
back to top

Coding sequence (CDS) from alignment at scaffold_2:1380261..1381056-

>mRNA_1160 ID=mRNA_1160|Name=jgi.p|Nanoce1779_2|575566|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_2:1380261..1381056- (Nannochloropsis oceanica)
ATGTCGCTCTCTCAGTTCATTCAGGTGACAATCACGCCCTGTCTCCTCGT
CTCGGCCATCGGGCTCCTCCTTCTCTCCATGACTAACCGCTACACGCATC
TCACCAATAGTATTCGGCTGATGAAATGCAAGAACCTCAAGATTGTAATG
TACAAGAGAATCCGCACATTGAAGTTCGCGATCCTTTCAGCGCTGCTTTC
CGTCCTGTGCCTTTGTGTACTAATGATATTTTTCTTTCAAGTGCTCGTGA
GTAAGGGAAGTGAAGAGAACGTCGTCATCATCATCCTCTTTACCTCAAGC
CTCCTCTTTCTCTTGCTCAGCCTGAGTCTCTTTACCTTTGACATGTTTGT
CTCGTTGAACTCGATACACAAAAAACTTACGGCCGAGGGCGTGTTGCCCG
TGTAA
back to top
Synonyms
Publications