jgi.p|Nanoce1779_2|523812, mRNA_116 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523812
Unique NamemRNA_116
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length456
Alignment locationscaffold_3:309676..310347 -

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Properties
Property NameValue
TranscriptId523898
TrackFilteredModels2
ProteinId523812
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:309676..310347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523812gene_116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523812mRNA_116-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_116CDS_116Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_116 ID=mRNA_116|Name=jgi.p|Nanoce1779_2|523812|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGCGACAAATTGACTCACCCAACAGCAGCAGCAGCAGCAGCAGCGGCGG
TATAAGTGGTGGAGGGAGCGGGAATGCGCCGGCGGACGATAGCCCAGACG
TGGAAGTGCGGAAAGCAGACCAGGAGATGATCAATGAATTTGGACGCCTC
AACAACAAATACATTGAGCTGGACGAGGATTTGACGGGTCTCAAGGAGCA
ACTGGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGTGGGAGTAGGTG
GACCCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGGTATCAGAAGAT
TATGCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTACAAGCACGGGT
GGAGGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCGGCAGATGGAGT
TAAAGAAGGCGTTGTATGGACGATTTGGGAATTCGATCAATTTGGAAAGT
TCGTGA
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protein sequence of jgi.p|Nanoce1779_2|523812

>mRNA_116-protein ID=mRNA_116-protein|Name=jgi.p|Nanoce1779_2|523812|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MRQIDSPNSSSSSSSGGISGGGSGNAPADDSPDVEVRKADQEMINEFGRL
NNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSED
YATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLES
S*
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mRNA from alignment at scaffold_3:309676..310347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_116 ID=mRNA_116|Name=jgi.p|Nanoce1779_2|523812|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at scaffold_3:309676..310347- (Nannochloropsis oceanica)
ATGCGACAAATTGACTCACCCAACAGCAGCAGCAGCAGCAGCAGCGGCGG
TATAAGTGGTGGAGGGAGCGGGAATGCGCCGGCGGACGATAGCCCAGACG
TGGAAGTGCGGAAAGCAGACCAGGAGATGATCAATGAATTTGGACGCCTC
AACAACAAATACATTGAGCTGGACGAGGATTTGACGGGTCTCAAGGTACG
TGCGATGATGTGGGAGAAGATTGGGAGCAGAGCGCTGGGCTCTCTTCGTT
GTTTTTCGGCTTTCGTTCAAGGCTCCGGTGGTCCTCCATTCTGCTATTGA
CCAGCACCAGCTTCAGCTTTATCGTTCGTAGGCGTTTCCCTGTTTTTTTC
CTCACGAACACTCCTCCGGCTACCTTTTTTTTACCTATTTAAACACCCTC
CTGTCAAATAGGAGCAACTGGAGAAGCTCGACGACGCCGTCACAGAGCTG
ATGGTGGGAGTAGGTGGACCCGTGCGGCTTTTGTTAGGAGAGGCCTTTGT
GGAGGTATCAGAAGATTATGCCACAGAGTATTGCGAACGAAAACAGGAGC
AGTTACAAGCACGGGTGGAGGAGCTCGGGGCGGAGAAGGAAGGGATTGCG
GCCCGGCAGATGGAGTTAAAGAAGGCGTTGTATGGACGATTTGGGAATTC
GATCAATTTGGAAAGTTCGTGA
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Coding sequence (CDS) from alignment at scaffold_3:309676..310347-

>mRNA_116 ID=mRNA_116|Name=jgi.p|Nanoce1779_2|523812|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_3:309676..310347- (Nannochloropsis oceanica)
GAGCAACTGGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGTGGGAGT
AGGTGGACCCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGGTATCAG
AAGATTATGCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTACAAGCA
CGGGTGGAGGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCGGCAGAT
GGAGTTAAAGAAGGCGTTGTATGGACGATTTGGGAATTCGATCAATTTGG
AAAGTTCGTGAATGCGACAAATTGACTCACCCAACAGCAGCAGCAGCAGC
AGCAGCGGCGGTATAAGTGGTGGAGGGAGCGGGAATGCGCCGGCGGACGA
TAGCCCAGACGTGGAAGTGCGGAAAGCAGACCAGGAGATGATCAATGAAT
TTGGACGCCTCAACAACAAATACATTGAGCTGGACGAGGATTTGACGGGT
CTCAAGGAGCAACTGGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGT
GGGAGTAGGTGGACCCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGG
TATCAGAAGATTATGCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTA
CAAGCACGGGTGGAGGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCG
GCAGATGGAGTTAAAGAAGGCGTTGTATGGACGATTTGGGAATTCGATCA
ATTTGGAAAGTTCGTGAATGCGACAAATTGACTCACCCAACAGCAGCAGC
AGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGCGGGAATGCGCCGGC
GGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGACCAGGAGATGATCA
ATGAATTTGGACGCCTCAACAACAAATACATTGAGCTGGACGAGGATTTG
ACGGGTCTCAAG
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Synonyms
Publications