jgi.p|Nanoce1779_2|575559, mRNA_1158 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575559
Unique Name	mRNA_1158
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1734
Alignment location	scaffold_2:1374483..1376508 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575645
Track	FilteredModels2
ProteinId	575559

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1374483..1376508 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575559	gene_1158	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575559	mRNA_1158-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1158	CDS_1158	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1374483..1376508-
coding sequence from alignment at scaffold_2:1374483..1376508-

mRNA sequence

>mRNA_1158 ID=mRNA_1158|Name=jgi.p|Nanoce1779_2|575559|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
ACAGCGCTGCTATGAACATGCAGCATCGGCCGCAACGGCGGCAGTGGGGC
GCGTCCTACCTCTTTGCAACCGCAGCTCTACTGGGGACGGTCCAAGCGTT
CCTCCTCCCCTTCAACACCCCCGCCCAACCCCCACCCAGCCTTGCCAAAG
ACAGTGGACTTTGGTGGCAGCAACAGCGACAACAAGGAAGGAGCACCAAG
CTCCAAGCTGCCCTCGCCGAGCGCCCACGTTCCCCCTCTGTCACCCTAGA
TGATTCCACAGCCTTAATCGAGGCTGAGACTGTGGCCTTGAAGCCCCCTT
CTCGGGAGGAGCAAGCCAGGGACTGGTTCAACTCGGTCCTGTCCTCGCGG
GAACCCAACCCTCTCTTCCATGCAGCGACAGAGCTGGGGGTAGGACGGTT
GGTGGATGGCGAGACACGGGCTCCCACGAGGAAGGAGGAGGCGTGGCGCT
TCACGGACCTGTCGCGTGTGTACTCGCGGAAGCCGGGGAAAGCCCCTGCA
GTGCTGCAGCCGGCGCAGGTAGCCCTGATCAAGGAGAAAGTGAAGGAGCA
CACTCTGGAGGTGTGTGAAGGGCGAGCACTTGTTTTTGTGGATGGGGTCT
TCCACCCGGAGTTTTCGCCGGCGGGTTCGGTAGAGGGCCTGAAGGAGGAG
GGGGTTAGGGAGGGGTGGAAGGTTGGGAGTATTTTTGATTTTACGGGCGA
GGAGCAAGAGGAGCTGCTGCGGGAGATCGAGTGGTCGCCGGAGGTGGGGA
TGAGGCATACTTTGGCGGCTGGCTCATTGCCTTTTTGTTCCCTGAACCAA
GCGTGCGTGAAGGATGCTGCCTGCCTGGTGGTGGGTGAAAGGGGGGAGAT
GGCGGCACCAGTGCAATTTCTGTTCATCTCGACAAGCACGGAAGGGGAAG
GCGGGAAGGAGGGCGGGAAGGAGGCGAGGGTATCACACCCGAGGTTGGTG
GTAATTGCCAAGAAACGCTCGGCGGGGAAGTTCGTGCAGAGCTATGTGGA
TATCGGGGAAGGAGTGGGCCTTGCTAATGCCTGTACGACCGTCAGAGTTG
ACCGGCGGGCGGAGGTACAGCACCTCCACGCGAACGAGATGGGGGGCAAA
GGGCAGCTGTTTGACGCGGTGTCGGTGACAACGAAGAAGTTGAGTGCGTA
CAGGAATGTCTTTATCAACGTAGGGGGTGACATGGGTAGGATTAACCTGC
AGGCCACTATGAACGGGACGGAGGGGCGGGTGGATACGGAGGGTCTGACC
GTTAGCGGGGAGGAGCAGGAATTGGACATCCATTCTTACATCCACCACCT
GCGTAAGGATGGGAAGAGCAACATGTATCAGTGCAACATTGTGAGTGGAG
ATAGCCACTGTGTATTTAAGGGTCGGATGAAGCTGGAGCCGAGGGCGAGG
GGCGTAACGGCCGACCAGTTAATTCGGTCGATTATGCTAACGGATTCGTG
CACCGTTGACGCGATGCCGACCTTAGAGGTGTGCTCGGGGGATGTGGACT
GCACGCATGGAGCGACTGTGGCGGACATTGACGAGAACGAGGCGTTTTAC
TTGCAGTCGCGGGGCATTGGACGAAGGGAAGCACGGCAAGTCTTAATGAT
GGGGTTTGCGGCGCAGGTCTACAACCAGGTGCCCTGCGAACGGATGAGGA
AGAGGTTGAGCGATCGGTTGTATGAAGTGTGCCCGGAGGTGGGGATGGCA
GAGTCGTACGAGTACTTGAGTATTTAAGGAGGGA

protein sequence of jgi.p|Nanoce1779_2|575559

>mRNA_1158-protein ID=mRNA_1158-protein|Name=jgi.p|Nanoce1779_2|575559|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MNMQHRPQRRQWGASYLFATAALLGTVQAFLLPFNTPAQPPPSLAKDSGL
WWQQQRQQGRSTKLQAALAERPRSPSVTLDDSTALIEAETVALKPPSREE
QARDWFNSVLSSREPNPLFHAATELGVGRLVDGETRAPTRKEEAWRFTDL
SRVYSRKPGKAPAVLQPAQVALIKEKVKEHTLEVCEGRALVFVDGVFHPE
FSPAGSVEGLKEEGVREGWKVGSIFDFTGEEQEELLREIEWSPEVGMRHT
LAAGSLPFCSLNQACVKDAACLVVGERGEMAAPVQFLFISTSTEGEGGKE
GGKEARVSHPRLVVIAKKRSAGKFVQSYVDIGEGVGLANACTTVRVDRRA
EVQHLHANEMGGKGQLFDAVSVTTKKLSAYRNVFINVGGDMGRINLQATM
NGTEGRVDTEGLTVSGEEQELDIHSYIHHLRKDGKSNMYQCNIVSGDSHC
VFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHG
ATVADIDENEAFYLQSRGIGRREARQVLMMGFAAQVYNQVPCERMRKRLS
DRLYEVCPEVGMAESYEYLSI*

mRNA from alignment at scaffold_2:1374483..1376508-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1158 ID=mRNA_1158|Name=jgi.p|Nanoce1779_2|575559|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp|location=Sequence derived from alignment at scaffold_2:1374483..1376508- (Nannochloropsis oceanica)
ACAGCGCTGCTATGAACATGCAGCATCGGCCGCAACGGCGGCAGTGGGGC
GCGTCCTACCTCTTTGCAACCGCAGCTCTACTGGGGACGGTCCAAGCGTT
CCTCCTCCCCTTCAACACCCCCGCCCAACCCCCACCCAGCCTTGCCAAAG
ACAGTGGACTTTGGTGGCAGCAACAGCGACAACAAGGAAGGGTACGTAGA
CAGAGAAGAAAGAGGACGAAGGAGGCGGACGAGGAGGGGAAGGCTGTATC
ATTGCCTCATTTATCAGTAAAGTATCTCGTTTGCGTCTCGTCGCCCCCCG
CCGTCTTTCGACGAGTCTGGCCCACTAAACCATGCGTGTACCCCTGACGA
GTCAGCACCTGTTGGTTGAAGCCCTTTTCATGTAATCGAGTCTGCCTTTT
CATTCCCAACATCTCCACCTCCTCCTCATTCTTTTCCTCCTCACCCTCCT
TCCCTTCCCTTCCCCCCCTTCCTCCAAAACCAGAGCACCAAGCTCCAAGC
TGCCCTCGCCGAGCGCCCACGTTCCCCCTCTGTCACCCTAGATGATTCCA
CAGCCTTAATCGAGGCTGAGACTGTGGCCTTGAAGCCCCCTTCTCGGGAG
GAGCAAGCCAGGGACTGGTTCAACTCGGTCCTGTCCTCGCGGGAACCCAA
CCCTCTCTTCCATGCAGCGACAGAGCTGGGGGTAGGACGGTTGGTGGATG
GCGAGACACGGGCTCCCACGAGGAAGGAGGAGGCGTGGCGCTTCACGGAC
CTGTCGCGTGTGTACTCGCGGAAGCCGGGGAAAGCCCCTGCAGTGCTGCA
GCCGGCGCAGGTAGCCCTGATCAAGGAGAAAGTGAAGGAGCACACTCTGG
AGGTGTGTGAAGGGCGAGCACTTGTTTTTGTGGATGGGGTCTTCCACCCG
GAGTTTTCGCCGGCGGGTTCGGTAGAGGGCCTGAAGGAGGAGGGGGTTAG
GGAGGGGTGGAAGGTTGGGAGTATTTTTGATTTTACGGGCGAGGAGCAAG
AGGAGCTGCTGCGGGAGATCGAGTGGTCGCCGGAGGTGGGGATGAGGCAT
ACTTTGGCGGCTGGCTCATTGCCTTTTTGTTCCCTGAACCAAGCGTGCGT
GAAGGATGCTGCCTGCCTGGTGGTGGGTGAAAGGGGGGAGATGGCGGCAC
CAGTGCAATTTCTGTTCATCTCGACAAGCACGGAAGGGGAAGGCGGGAAG
GAGGGCGGGAAGGAGGCGAGGGTATCACACCCGAGGTTGGTGGTAATTGC
CAAGAAACGCTCGGCGGGGAAGTTCGTGCAGAGCTATGTGGATATCGGGG
AAGGAGTGGGCCTTGCTAATGCCTGTACGACCGTCAGAGTTGACCGGCGG
GCGGAGGTACAGCACCTCCACGCGAACGAGATGGGGGGCAAAGGGCAGCT
GTTTGACGCGGTGTCGGTGACAACGAAGAAGTTGAGTGCGTACAGGAATG
TCTTTATCAACGTAGGGGGTGACATGGGTAGGATTAACCTGCAGGCCACT
ATGAACGGGACGGAGGGGCGGGTGGATACGGAGGGTCTGACCGTTAGCGG
GGAGGAGCAGGAATTGGACATCCATTCTTACATCCACCACCTGCGTAAGG
ATGGGAAGAGCAACATGTATCAGTGCAACATTGTGAGTGGAGATAGCCAC
TGTGTATTTAAGGGTCGGATGAAGCTGGAGCCGAGGGCGAGGGGCGTAAC
GGCCGACCAGTTAATTCGGTCGATTATGCTAACGGATTCGTGCACCGTTG
ACGCGATGCCGACCTTAGAGGTGTGCTCGGGGGATGTGGACTGCACGCAT
GGAGCGACTGTGGCGGACATTGACGAGAACGAGGCGTTTTACTTGCAGTC
GCGGGGCATTGGACGAAGGGAAGCACGGCAAGTCTTAATGATGGGGTTTG
CGGCGCAGGTCTACAACCAGGTGCCCTGCGAACGGATGAGGAAGAGGTTG
AGCGATCGGTTGTATGAAGTGTGCCCGGAGGTGGGGATGGCAGAGTCGTA
CGAGTACTTGAGTATTTAAGGAGGGA

Coding sequence (CDS) from alignment at scaffold_2:1374483..1376508-

>mRNA_1158 ID=mRNA_1158|Name=jgi.p|Nanoce1779_2|575559|organism=Nannochloropsis oceanica|type=CDS|length=3432bp|location=Sequence derived from alignment at scaffold_2:1374483..1376508- (Nannochloropsis oceanica)
AGCACCAAGCTCCAAGCTGCCCTCGCCGAGCGCCCACGTTCCCCCTCTGT
CACCCTAGATGATTCCACAGCCTTAATCGAGGCTGAGACTGTGGCCTTGA
AGCCCCCTTCTCGGGAGGAGCAAGCCAGGGACTGGTTCAACTCGGTCCTG
TCCTCGCGGGAACCCAACCCTCTCTTCCATGCAGCGACAGAGCTGGGGGT
AGGACGGTTGGTGGATGGCGAGACACGGGCTCCCACGAGGAAGGAGGAGG
CGTGGCGCTTCACGGACCTGTCGCGTGTGTACTCGCGGAAGCCGGGGAAA
GCCCCTGCAGTGCTGCAGCCGGCGCAGGTAGCCCTGATCAAGGAGAAAGT
GAAGGAGCACACTCTGGAGGTGTGTGAAGGGCGAGCACTTGTTTTTGTGG
ATGGGGTCTTCCACCCGGAGTTTTCGCCGGCGGGTTCGGTAGAGGGCCTG
AAGGAGGAGGGGGTTAGGGAGGGGTGGAAGGTTGGGAGTATTTTTGATTT
TACGGGCGAGGAGCAAGAGGAGCTGCTGCGGGAGATCGAGTGGTCGCCGG
AGGTGGGGATGAGGCATACTTTGGCGGCTGGCTCATTGCCTTTTTGTTCC
CTGAACCAAGCGTGCGTGAAGGATGCTGCCTGCCTGGTGGTGGGTGAAAG
GGGGGAGATGGCGGCACCAGTGCAATTTCTGTTCATCTCGACAAGCACGG
AAGGGGAAGGCGGGAAGGAGGGCGGGAAGGAGGCGAGGGTATCACACCCG
AGGTTGGTGGTAATTGCCAAGAAACGCTCGGCGGGGAAGTTCGTGCAGAG
CTATGTGGATATCGGGGAAGGAGTGGGCCTTGCTAATGCCTGTACGACCG
TCAGAGTTGACCGGCGGGCGGAGGTACAGCACCTCCACGCGAACGAGATG
GGGGGCAAAGGGCAGCTGTTTGACGCGGTGTCGGTGACAACGAAGAAGTT
GAGTGCGTACAGGAATGTCTTTATCAACGTAGGGGGTGACATGGGTAGGA
TTAACCTGCAGGCCACTATGAACGGGACGGAGGGGCGGGTGGATACGGAG
GGTCTGACCGTTAGCGGGGAGGAGCAGGAATTGGACATCCATTCTTACAT
CCACCACCTGCGTAAGGATGGGAAGAGCAACATGTATCAGTGCAACATTG
TGAGTGGAGATAGCCACTGTGTATTTAAGGGTCGGATGAAGCTGGAGCCG
AGGGCGAGGGGCGTAACGGCCGACCAGTTAATTCGGTCGATTATGCTAAC
GGATTCGTGCACCGTTGACGCGATGCCGACCTTAGAGGTGTGCTCGGGGG
ATGTGGACTGCACGCATGGAGCGACTGTGGCGGACATTGACGAGAACGAG
GCGTTTTACTTGCAGTCGCGGGGCATTGGACGAAGGGAAGCACGGCAAGT
CTTAATGATGGGGTTTGCGGCGCAGGTCTACAACCAGGTGCCCTGCGAAC
GGATGAGGAAGAGGTTGAGCGATCGGTTGTATGAAGTGTGCCCGGAGGTG
GGGATGGCAGAGTCGTACGAGTACTTGAGTATTTAAATGAACATGCAGCA
TCGGCCGCAACGGCGGCAGTGGGGCGCGTCCTACCTCTTTGCAACCGCAG
CTCTACTGGGGACGGTCCAAGCGTTCCTCCTCCCCTTCAACACCCCCGCC
CAACCCCCACCCAGCCTTGCCAAAGACAGTGGACTTTGGTGGCAGCAACA
GCGACAACAAGGAAGGAGCACCAAGCTCCAAGCTGCCCTCGCCGAGCGCC
CACGTTCCCCCTCTGTCACCCTAGATGATTCCACAGCCTTAATCGAGGCT
GAGACTGTGGCCTTGAAGCCCCCTTCTCGGGAGGAGCAAGCCAGGGACTG
GTTCAACTCGGTCCTGTCCTCGCGGGAACCCAACCCTCTCTTCCATGCAG
CGACAGAGCTGGGGGTAGGACGGTTGGTGGATGGCGAGACACGGGCTCCC
ACGAGGAAGGAGGAGGCGTGGCGCTTCACGGACCTGTCGCGTGTGTACTC
GCGGAAGCCGGGGAAAGCCCCTGCAGTGCTGCAGCCGGCGCAGGTAGCCC
TGATCAAGGAGAAAGTGAAGGAGCACACTCTGGAGGTGTGTGAAGGGCGA
GCACTTGTTTTTGTGGATGGGGTCTTCCACCCGGAGTTTTCGCCGGCGGG
TTCGGTAGAGGGCCTGAAGGAGGAGGGGGTTAGGGAGGGGTGGAAGGTTG
GGAGTATTTTTGATTTTACGGGCGAGGAGCAAGAGGAGCTGCTGCGGGAG
ATCGAGTGGTCGCCGGAGGTGGGGATGAGGCATACTTTGGCGGCTGGCTC
ATTGCCTTTTTGTTCCCTGAACCAAGCGTGCGTGAAGGATGCTGCCTGCC
TGGTGGTGGGTGAAAGGGGGGAGATGGCGGCACCAGTGCAATTTCTGTTC
ATCTCGACAAGCACGGAAGGGGAAGGCGGGAAGGAGGGCGGGAAGGAGGC
GAGGGTATCACACCCGAGGTTGGTGGTAATTGCCAAGAAACGCTCGGCGG
GGAAGTTCGTGCAGAGCTATGTGGATATCGGGGAAGGAGTGGGCCTTGCT
AATGCCTGTACGACCGTCAGAGTTGACCGGCGGGCGGAGGTACAGCACCT
CCACGCGAACGAGATGGGGGGCAAAGGGCAGCTGTTTGACGCGGTGTCGG
TGACAACGAAGAAGTTGAGTGCGTACAGGAATGTCTTTATCAACGTAGGG
GGTGACATGGGTAGGATTAACCTGCAGGCCACTATGAACGGGACGGAGGG
GCGGGTGGATACGGAGGGTCTGACCGTTAGCGGGGAGGAGCAGGAATTGG
ACATCCATTCTTACATCCACCACCTGCGTAAGGATGGGAAGAGCAACATG
TATCAGTGCAACATTGTGAGTGGAGATAGCCACTGTGTATTTAAGGGTCG
GATGAAGCTGGAGCCGAGGGCGAGGGGCGTAACGGCCGACCAGTTAATTC
GGTCGATTATGCTAACGGATTCGTGCACCGTTGACGCGATGCCGACCTTA
GAGGTGTGCTCGGGGGATGTGGACTGCACGCATGGAGCGACTGTGGCGGA
CATTGACGAGAACGAGGCGTTTTACTTGCAGTCGCGGGGCATTGGACGAA
GGGAAGCACGGCAAGTCTTAATGATGGGGTTTGCGGCGCAGGTCTACAAC
CAGGTGCCCTGCGAACGGATGAGGAAGAGGTTGAGCGATCGGTTGTATGA
AGTGTGCCCGGAGGTGGGGATGGCAGAGTCGTACGAGTACTTGAGTATTT
AAATGAACATGCAGCATCGGCCGCAACGGCGGCAGTGGGGCGCGTCCTAC
CTCTTTGCAACCGCAGCTCTACTGGGGACGGTCCAAGCGTTCCTCCTCCC
CTTCAACACCCCCGCCCAACCCCCACCCAGCCTTGCCAAAGACAGTGGAC
TTTGGTGGCAGCAACAGCGACAACAAGGAAGG

Synonyms

Publications