jgi.p|Nanoce1779_2|575548, mRNA_1155 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575548
Unique NamemRNA_1155
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length746
Alignment locationscaffold_2:1365382..1366342 -

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Properties
Property NameValue
TranscriptId575634
TrackFilteredModels2
ProteinId575548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1365382..1366342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575548gene_1155Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575548mRNA_1155-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1155CDS_1155Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1155 ID=mRNA_1155|Name=jgi.p|Nanoce1779_2|575548|organism=Nannochloropsis oceanica|type=mRNA|length=746bp
TGGTGCTGGTGCTGCTTCTGGTGGTGGTGCTGCTTCTGGTGGTGGTGCTG
CTGGTGGTGCTGCTGCTGCTGGGGCTGCTGCTGTTGTTGCTGCTGCTGCT
TACCCCCCCGTCCATCGAAACCAGTGATCCCGACGCCTTCTCCCGAGTAA
TATTGCCCCGTGTAAGGATCCGGTTCAGCCACTGCTGCTGCTCCACCTGC
TTCAATCCCTTCATCCTCTCCTCCCTCCCCAGCGGTACTTGAAGATAGGA
TGTCGAACACGGTGACAGGGGGAGAAGGCTGTGTCCCCTCGCCCCCCCCC
TCAAACCCCACGTCCTCCCTCCCCGCGTACGGGGCACCAGGAGAAGTAGC
TGTGTCAGCTTCCATTGTCGCTGTTGACGGCCACGGTGAGGAGGAGGAGG
AGACAGACCCTGCCGCCTCCTGGGCCGACGTCGCTCGTAATGGTGGTGGT
GACAAGGGCGGCAGCGCTTCGGACGGATGGAAGGGCGGAGGCTGTTGTCT
ACTACTGCTACTGCTGTCACTACTGGTGCTGGGCCTGTTGCTGGGGTCGG
TGGTGACGGTGGGTGGAGGCGCAGGAGGCAGCCCAGCTTTGGCTGGCACG
AGGACGAGGCTGCTGCAGACGAGGAGAAGGAGAGTGGCCCCAAGTTCCTG
CAGGCTCCAGTTCGTGGTGCTGCTGCAGCATGCCTTTCTTATCCTCCTTC
TTCTTCTTTTTGCTGATGCGTCCATCATGCACAGGCCCTGTTGTTT
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protein sequence of jgi.p|Nanoce1779_2|575548

>mRNA_1155-protein ID=mRNA_1155-protein|Name=jgi.p|Nanoce1779_2|575548|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSNTVTGGEGCVPSPPPSNPTSSLPAYGAPGEVAVSASIVAVDGHGEEEE
ETDPAASWADVARNGGGDKGGSASDGWKGGGCCLLLLLLSLLVLGLLLGS
VVTVGGGAGGSPALAGTRTRLLQTRRRRVAPSSCRLQFVVLLQHAFLILL
LLLFADASIMHRPCC
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mRNA from alignment at scaffold_2:1365382..1366342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1155 ID=mRNA_1155|Name=jgi.p|Nanoce1779_2|575548|organism=Nannochloropsis oceanica|type=mRNA|length=961bp|location=Sequence derived from alignment at scaffold_2:1365382..1366342- (Nannochloropsis oceanica)
TGGTGCTGGTGCTGCTTCTGGTGGTGGTGCTGCTTCTGGTGGTGGTGCTG
CTGGTGGTGCTGCTGCTGCTGGGGCTGCTGCTGTTGTTGCTGCTGCTGCT
TACCCCCCCGTCCATCGAAACCAGTGATCCCGACGCCTTCTCCCGAGTAA
TATTGCCCCGTGTAAGGATCCGGTTCAGCCACTGCTGCTGCTCCACCTGC
TTCAATCCCTTCATCCTCTCCTCCCTCCCCAGCGGTACTTGAAGATAGGA
TGTCGAACACGGTGACAGGGGGAGAAGGCTGTGTCCCCTCGCCCCCCCCC
TCAAACCCCACGTCCTCCCTCCCCGCGTACGGGGCACCAGGAGAAGTAGC
TGTGTGATGATGGGGAGGGAAGAAGGGTTCAATGAGGTGATGATGGGGAG
AATTGGAGGCCCCAGAGAGTGATCGCATGAACGTCCTCCGTCCCTCTTCC
CTTTTTCCTCTTTTCCCCATGCCCTGTTCGTCACCACTTTGAATGGCGCG
GATGAAATGTTCGTGCCTCCTTCAAGTTATTATATCCCTTCTTCCTACAT
CCCCCCATTGGCACCTGTGTCAGCTTCCATTGTCGCTGTTGACGGCCACG
GTGAGGAGGAGGAGGAGACAGACCCTGCCGCCTCCTGGGCCGACGTCGCT
CGTAATGGTGGTGGTGACAAGGGCGGCAGCGCTTCGGACGGATGGAAGGG
CGGAGGCTGTTGTCTACTACTGCTACTGCTGTCACTACTGGTGCTGGGCC
TGTTGCTGGGGTCGGTGGTGACGGTGGGTGGAGGCGCAGGAGGCAGCCCA
GCTTTGGCTGGCACGAGGACGAGGCTGCTGCAGACGAGGAGAAGGAGAGT
GGCCCCAAGTTCCTGCAGGCTCCAGTTCGTGGTGCTGCTGCAGCATGCCT
TTCTTATCCTCCTTCTTCTTCTTTTTGCTGATGCGTCCATCATGCACAGG
CCCTGTTGTTT
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Coding sequence (CDS) from alignment at scaffold_2:1365382..1366342-

>mRNA_1155 ID=mRNA_1155|Name=jgi.p|Nanoce1779_2|575548|organism=Nannochloropsis oceanica|type=CDS|length=994bp|location=Sequence derived from alignment at scaffold_2:1365382..1366342- (Nannochloropsis oceanica)
CTGTGTCAGCTTCCATTGTCGCTGTTGACGGCCACGGTGAGGAGGAGGAG
GAGACAGACCCTGCCGCCTCCTGGGCCGACGTCGCTCGTAATGGTGGTGG
TGACAAGGGCGGCAGCGCTTCGGACGGATGGAAGGGCGGAGGCTGTTGTC
TACTACTGCTACTGCTGTCACTACTGGTGCTGGGCCTGTTGCTGGGGTCG
GTGGTGACGGTGGGTGGAGGCGCAGGAGGCAGCCCAGCTTTGGCTGGCAC
GAGGACGAGGCTGCTGCAGACGAGGAGAAGGAGAGTGGCCCCAAGTTCCT
GCAGGCTCCAGTTCGTGGTGCTGCTGCAGCATGCCTTTCTTATCCTCCTT
CTTCTTCTTTTTGCTGATGCGTCCATCATGCACAGGCCCTGTTGTTTATG
TCGAACACGGTGACAGGGGGAGAAGGCTGTGTCCCCTCGCCCCCCCCCTC
AAACCCCACGTCCTCCCTCCCCGCGTACGGGGCACCAGGAGAAGTAGCTG
TGTCAGCTTCCATTGTCGCTGTTGACGGCCACGGTGAGGAGGAGGAGGAG
ACAGACCCTGCCGCCTCCTGGGCCGACGTCGCTCGTAATGGTGGTGGTGA
CAAGGGCGGCAGCGCTTCGGACGGATGGAAGGGCGGAGGCTGTTGTCTAC
TACTGCTACTGCTGTCACTACTGGTGCTGGGCCTGTTGCTGGGGTCGGTG
GTGACGGTGGGTGGAGGCGCAGGAGGCAGCCCAGCTTTGGCTGGCACGAG
GACGAGGCTGCTGCAGACGAGGAGAAGGAGAGTGGCCCCAAGTTCCTGCA
GGCTCCAGTTCGTGGTGCTGCTGCAGCATGCCTTTCTTATCCTCCTTCTT
CTTCTTTTTGCTGATGCGTCCATCATGCACAGGCCCTGTTGTTTATGTCG
AACACGGTGACAGGGGGAGAAGGCTGTGTCCCCTCGCCCCCCCCCTCAAA
CCCCACGTCCTCCCTCCCCGCGTACGGGGCACCAGGAGAAGTAG
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Synonyms
Publications