jgi.p|Nanoce1779_2|575543, mRNA_1153 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575543
Unique NamemRNA_1153
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length485
Alignment locationscaffold_2:1361073..1362057 -

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Properties
Property NameValue
TranscriptId575629
TrackFilteredModels2
ProteinId575543
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1361073..1362057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575543gene_1153Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575543mRNA_1153-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1153CDS_1153Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1153 ID=mRNA_1153|Name=jgi.p|Nanoce1779_2|575543|organism=Nannochloropsis oceanica|type=mRNA|length=485bp
ACAGCGCCCCTGCGTTGAGCTCTTGCTTCTCCTCCTTCTTCACTTACTCT
GCATCACAGACAAGACACAAAAGCCTGCCAATCAACAATCAATCAACCAT
GAAGCTGCTTCTGCTGCCCCTCCTTGCTGCCACTATCGCTGGCCTTACTC
AGGCACAGGACATCGCCGACACCTCTGCCTCTGTCAACTTTCCCCCCTCC
ACTGTCCTCAATGACGATGATACCTCCGCGGGCTCGTCCTTGAGGGGCTA
CGGCTTAAAGGGTTTCATTGTTCCGGCCGAACACAGTAAAGACCCTGCAT
GTGGCAAGCCTGGTTGCTACTACTCGGTGGACTGCGACGAAGACAATGTC
TGCAAGAGTGTATGCACGGGGAGTGGATGCTAAAAGTCGGGATGAAAAGC
AGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAAAGAAAACTGTGGGATGGA
AGTATAGTTGATGCCATAACGACCCTCTTGTGCGT
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protein sequence of jgi.p|Nanoce1779_2|575543

>mRNA_1153-protein ID=mRNA_1153-protein|Name=jgi.p|Nanoce1779_2|575543|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MKLLLLPLLAATIAGLTQAQDIADTSASVNFPPSTVLNDDDTSAGSSLRG
YGLKGFIVPAEHSKDPACGKPGCYYSVDCDEDNVCKSVCTGSGC*
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mRNA from alignment at scaffold_2:1361073..1362057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1153 ID=mRNA_1153|Name=jgi.p|Nanoce1779_2|575543|organism=Nannochloropsis oceanica|type=mRNA|length=985bp|location=Sequence derived from alignment at scaffold_2:1361073..1362057- (Nannochloropsis oceanica)
ACAGCGCCCCTGCGTTGAGCTCTTGCTTCTCCTCCTTCTTCACTTACTCT
GCATCACAGACAAGACACAAAAGCCTGCCAATCAACAATCAATCAACCAT
GAAGCTGCTTCTGCTGCCCCTCCTTGCTGCCACTATCGCTGGCCTTACTC
AGGCACAGGTATGCTTGTCATGTTGTTCACATTGGACAAAGTTCTGCTGC
GCCTGCCTGGCTTCCACGCGGTTTGACACCTACCCATCACTGCGCGCCTG
AAGACCAGCTCTTTTTCTCTCCCAAGCCCTTGCTTAGTCACCATCTGCTT
GCCGACCATCCACTGCATCTTACTCTGATTCCCCGTATTGTTTCCCCACC
CAATATGCACTCTCTTCCAGGACATCGCCGACACCTCTGCCTCTGTCAAC
TTTCCCCCCTCCACTGTCCTCAATGACGATGATACCTCCGCGGGCTCGTC
CTTGAGGGGCTACGGCTTAAAGGGTTTCATTGTTCCGGCCGAACACAGTA
AAGACCCTGCATGTGGCAAGGTGGGTGGTGCAGAGAGGGGTGGAGGAAGG
GAGGGAGGGAAGGACGAAAGAGACGCACATTGTAAATGATTTTGTGCTTT
ATTTCCTTGTGTGGGTATTCGGAAACCAGGCGGAGAACGAGTTAAGGTCA
AAGGATTGATGACATGTAAATGTCTACTCCTCTCTTAACCTTTAAACATC
ATCTCTCACACACACACATTCTCCTCCGACCGTCCTTTTTTCCCTTTTCC
TCCCTCCTTCCCTCCTTCTCTCCCTCCCTCCTTGTCTTCTTTTCTGCTGC
TATTTCAGCCTGGTTGCTACTACTCGGTGGACTGCGACGAAGACAATGTC
TGCAAGAGTGTATGCACGGGGAGTGGATGCTAAAAGTCGGGATGAAAAGC
AGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAAAGAAAACTGTGGGATGGA
AGTATAGTTGATGCCATAACGACCCTCTTGTGCGT
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Coding sequence (CDS) from alignment at scaffold_2:1361073..1362057-

>mRNA_1153 ID=mRNA_1153|Name=jgi.p|Nanoce1779_2|575543|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_2:1361073..1362057- (Nannochloropsis oceanica)
CCTGGTTGCTACTACTCGGTGGACTGCGACGAAGACAATGTCTGCAAGAG
TGTATGCACGGGGAGTGGATGCTAAGACATCGCCGACACCTCTGCCTCTG
TCAACTTTCCCCCCTCCACTGTCCTCAATGACGATGATACCTCCGCGGGC
TCGTCCTTGAGGGGCTACGGCTTAAAGGGTTTCATTGTTCCGGCCGAACA
CAGTAAAGACCCTGCATGTGGCAAGATGAAGCTGCTTCTGCTGCCCCTCC
TTGCTGCCACTATCGCTGGCCTTACTCAGGCACAGCCTGGTTGCTACTAC
TCGGTGGACTGCGACGAAGACAATGTCTGCAAGAGTGTATGCACGGGGAG
TGGATGCTAAGACATCGCCGACACCTCTGCCTCTGTCAACTTTCCCCCCT
CCACTGTCCTCAATGACGATGATACCTCCGCGGGCTCGTCCTTGAGGGGC
TACGGCTTAAAGGGTTTCATTGTTCCGGCCGAACACAGTAAAGACCCTGC
ATGTGGCAAGATGAAGCTGCTTCTGCTGCCCCTCCTTGCTGCCACTATCG
CTGGCCTTACTCAGGCACAGCCTGGTTGCTACTACTCGGTGGACTGCGAC
GAAGACAATGTCTGCAAGAGTGTATGCACGGGGAGTGGATGCTAAGACAT
CGCCGACACCTCTGCCTCTGTCAACTTTCCCCCCTCCACTGTCCTCAATG
ACGATGATACCTCCGCGGGCTCGTCCTTGAGGGGCTACGGCTTAAAGGGT
TTCATTGTTCCGGCCGAACACAGTAAAGACCCTGCATGTGGCAAGATGAA
GCTGCTTCTGCTGCCCCTCCTTGCTGCCACTATCGCTGGCCTTACTCAGG
CACAG
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Synonyms
Publications