jgi.p|Nanoce1779_2|154001, mRNA_1152 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|154001
Unique NamemRNA_1152
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1143
Alignment locationscaffold_2:1360220..1361650 -

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Properties
Property NameValue
TranscriptId154087
TrackFilteredModels2
ProteinId154001
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1360220..1361650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|154001gene_1152Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|154001mRNA_1152-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1152CDS_1152Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1152 ID=mRNA_1152|Name=jgi.p|Nanoce1779_2|154001|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
CCTCCACTGTCCTCAATGACGATGATACCTCCGCGGGCTCGTCCTTGAGG
GGCTACGGCTTAAAGGGTTTCATTGTTCCGGCCGAACACAGTAAAGACCC
TGCATGTGGCAAGCCTGGTTGCTACTACTCGGTGGACTGCGACGAAGACA
ATGTCTGCAAGAGTGTATGCACGGGGAGTGGATGCTAAAAGTCGGGATGA
AAAGCAGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAAAGAAAACTGTGGG
ATGGAAGTATAGTTGATGCCATAACGACCCTCTTGTGCGTGTGAAGATTA
CAGAGGGATGGGATGGGAAGATGAGACAGAAAAAGGAAGAAGAAGGGTTG
AAGGAAATGAAGGATAAAAATGGAGGTTGGCGAGAAGAGGAGCGTGAGGC
TTTCGGCAGCAAGGGCAGCACCCGCATTGAAGGTATATCTACATGTTGTC
TGCACATGGCCATACCGAGTGCACATACAAGCCTCCATACAAAGAGGACC
GAAACAGGCAGGCATGCACGCATGATACCGTTCCTTCAAGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTAGTACGTGTGTTAGAGGGCGAAGTTT
GTGTAAAGCAGAGAGAGAAAGGAGGAGACCCAGAGAAGGGCAAGTGGCCT
TCTTCTTATCAAATAAAAAAAAGAAACCAAACCAACACACCACAACCACT
GCTGTGCCAGCCACCACCACACCAAGCAAGCGGCACTTCCTTTTTTTGGG
TCCACGTCTTCTATCTTCTTCATCATGATCACCATCTCCCTCCACTACAC
CATCGCCCTTGTCCTACATCACGCCCAATCACCTCCCTCCTTTCTTTCCA
CCCCCCCTCCCTTTCCATCTCGTCTTCCTCCTCTTTACTGAACTTCCACT
TTATTAACCCCCAGAGCCATGTCCCCAAATCCGGTCATGGTGCGAAGGAA
GACGAGGGTGAGTCCCCCCAAACCAAGAGCGGTCACGACCCCATCCGAAG
GCGCCTTGAGGTAAGTGGGCTTGGCCTTAGTGTCGTAGACCTGTAGGAGA
ACAAGAGGAAAAGGACGAGCGAAAAGGACGAGCGAGGGGAAGAGGAAGGG
GGAAAGGAGGGTGGAAGGGAAGGAAGGAAGAAAGAAGGATATG
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protein sequence of jgi.p|Nanoce1779_2|154001

>mRNA_1152-protein ID=mRNA_1152-protein|Name=jgi.p|Nanoce1779_2|154001|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MRQKKEEEGLKEMKDKNGGWREEEREAFGSKGSTRIEGISTCCLHMAIPS
AHTSLHTKRTETGRHARMIPFLQAAAAAAAAAAAVVRVLEGEVCVKQREK
GGDPEKGKWPSSYQIKKRNQTNTPQPLLCQPPPHQASGTSFFWVHVFYLL
HHDHHLPPLHHRPCPTSRPITSLLSFHPPSLSISSSSSLLNFHFINPQSH
VPKSGHGAKEDEGESPQTKSGHDPIRRRLEVSGLGLSVVDL*
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mRNA from alignment at scaffold_2:1360220..1361650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1152 ID=mRNA_1152|Name=jgi.p|Nanoce1779_2|154001|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at scaffold_2:1360220..1361650- (Nannochloropsis oceanica)
CCTCCACTGTCCTCAATGACGATGATACCTCCGCGGGCTCGTCCTTGAGG
GGCTACGGCTTAAAGGGTTTCATTGTTCCGGCCGAACACAGTAAAGACCC
TGCATGTGGCAAGGTGGGTGGTGCAGAGAGGGGTGGAGGAAGGGAGGGAG
GGAAGGACGAAAGAGACGCACATTGTAAATGATTTTGTGCTTTATTTCCT
TGTGTGGGTATTCGGAAACCAGGCGGAGAACGAGTTAAGGTCAAAGGATT
GATGACATGTAAATGTCTACTCCTCTCTTAACCTTTAAACATCATCTCTC
ACACACACACATTCTCCTCCGACCGTCCTTTTTTCCCTTTTCCTCCCTCC
TTCCCTCCTTCTCTCCCTCCCTCCTTGTCTTCTTTTCTGCTGCTATTTCA
GCCTGGTTGCTACTACTCGGTGGACTGCGACGAAGACAATGTCTGCAAGA
GTGTATGCACGGGGAGTGGATGCTAAAAGTCGGGATGAAAAGCAGAGGGA
GGGAGGGAGGGAGGGAGAGAAGGAAAGAAAACTGTGGGATGGAAGTATAG
TTGATGCCATAACGACCCTCTTGTGCGTGTGAAGATTACAGAGGGATGGG
ATGGGAAGATGAGACAGAAAAAGGAAGAAGAAGGGTTGAAGGAAATGAAG
GATAAAAATGGAGGTTGGCGAGAAGAGGAGCGTGAGGCTTTCGGCAGCAA
GGGCAGCACCCGCATTGAAGGTATATCTACATGTTGTCTGCACATGGCCA
TACCGAGTGCACATACAAGCCTCCATACAAAGAGGACCGAAACAGGCAGG
CATGCACGCATGATACCGTTCCTTCAAGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGTAGTACGTGTGTTAGAGGGCGAAGTTTGTGTAAAGCAGA
GAGAGAAAGGAGGAGACCCAGAGAAGGGCAAGTGGCCTTCTTCTTATCAA
ATAAAAAAAAGAAACCAAACCAACACACCACAACCACTGCTGTGCCAGCC
ACCACCACACCAAGCAAGCGGCACTTCCTTTTTTTGGGTCCACGTCTTCT
ATCTTCTTCATCATGATCACCATCTCCCTCCACTACACCATCGCCCTTGT
CCTACATCACGCCCAATCACCTCCCTCCTTTCTTTCCACCCCCCCTCCCT
TTCCATCTCGTCTTCCTCCTCTTTACTGAACTTCCACTTTATTAACCCCC
AGAGCCATGTCCCCAAATCCGGTCATGGTGCGAAGGAAGACGAGGGTGAG
TCCCCCCAAACCAAGAGCGGTCACGACCCCATCCGAAGGCGCCTTGAGGT
AAGTGGGCTTGGCCTTAGTGTCGTAGACCTGTAGGAGAACAAGAGGAAAA
GGACGAGCGAAAAGGACGAGCGAGGGGAAGAGGAAGGGGGAAAGGAGGGT
GGAAGGGAAGGAAGGAAGAAAGAAGGATATG
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Coding sequence (CDS) from alignment at scaffold_2:1360220..1361650-

>mRNA_1152 ID=mRNA_1152|Name=jgi.p|Nanoce1779_2|154001|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_2:1360220..1361650- (Nannochloropsis oceanica)
ATGAGACAGAAAAAGGAAGAAGAAGGGTTGAAGGAAATGAAGGATAAAAA
TGGAGGTTGGCGAGAAGAGGAGCGTGAGGCTTTCGGCAGCAAGGGCAGCA
CCCGCATTGAAGGTATATCTACATGTTGTCTGCACATGGCCATACCGAGT
GCACATACAAGCCTCCATACAAAGAGGACCGAAACAGGCAGGCATGCACG
CATGATACCGTTCCTTCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGTAGTACGTGTGTTAGAGGGCGAAGTTTGTGTAAAGCAGAGAGAGAAA
GGAGGAGACCCAGAGAAGGGCAAGTGGCCTTCTTCTTATCAAATAAAAAA
AAGAAACCAAACCAACACACCACAACCACTGCTGTGCCAGCCACCACCAC
ACCAAGCAAGCGGCACTTCCTTTTTTTGGGTCCACGTCTTCTATCTTCTT
CATCATGATCACCATCTCCCTCCACTACACCATCGCCCTTGTCCTACATC
ACGCCCAATCACCTCCCTCCTTTCTTTCCACCCCCCCTCCCTTTCCATCT
CGTCTTCCTCCTCTTTACTGAACTTCCACTTTATTAACCCCCAGAGCCAT
GTCCCCAAATCCGGTCATGGTGCGAAGGAAGACGAGGGTGAGTCCCCCCA
AACCAAGAGCGGTCACGACCCCATCCGAAGGCGCCTTGAGGTAAGTGGGC
TTGGCCTTAGTGTCGTAGACCTGTAG
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Synonyms
Publications