jgi.p|Nanoce1779_2|523259, mRNA_1151 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|523259
Unique Name	mRNA_1151
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1137
Alignment location	scaffold_2:1357254..1358504 +

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Properties


Property Name	Value
TranscriptId	523345
Track	FilteredModels2
ProteinId	523259

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1357254..1358504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|523259	gene_1151	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|523259	mRNA_1151-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1151	CDS_1151	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1357254..1358504+
coding sequence from alignment at scaffold_2:1357254..1358504+

mRNA sequence

>mRNA_1151 ID=mRNA_1151|Name=jgi.p|Nanoce1779_2|523259|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGGGCGGAACCGCGGCCAAGTTGGGATTAATTCCCCTGGCCACACTCCT
CGAGACTCTTCCTTCAGCAGCCTCCTCCTCCTCATCCTCCTCCTCGTGCC
CAACCCCACCCCTTCCACCGCCGCCATTCCTGCACCGGGTGCCATTGCCC
AAGTATCGATCAGAGCGCACGCCCACGACTATTGTGACCTTGCTAGTCGA
TGCATGCAGGGATTTGCTGTCTCAGGGGGGCGTAAGATGGGAGGAAGTAG
CTGCTGTCGGGGTGGGGTTTCCTGGCCATGTCAACGCAGCCATGGCAGGA
GGGGCGGCCAATTTGAGCGAAGATTGGGAGACAGGCGTGCCGCTCACGGA
CCTCTTAAAAGAAGGATTCAGAAGGCATACAGGTGATGGTGGACAAACGA
CGTTTCTTGAAAACATTCCCTCCACCATTGTCCTTATCAATGACGCGGAT
GCTGCACTGGCAGCAGAGGCATGGGGTGGGGCTGCACGAGGTCACAAAGA
CGTCGTCATGCTCACATTAGGAACAGGGATTGGAGTAGCTGTATGGCTGC
ATGGACAAGCGTGGTCGGGCTCAAGGGGCTTGGTTGAGGGGGGGCACATG
GTGGTGGAGAAGGAGGGGAGAAAGTGTGGGTGCGGCCAAAGGGGATGCTT
GGAGATGTACGCGTCGGCGACGGCGGTGGTGCGGCGAGCCGAGGAAGTGG
GATTTCAGATGAGAAGATCAAAACAAGCAAAAAAAGACGGAGACCAAAAT
GGTGTCCTGAATGCCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATC
TGACCCTCTGGCTATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCT
TGGGGTGTTTGAATTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTT
GCGGGCGGGATGAGTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGA
AAAGTTTGTGGCCCATGGGTGGAGCATTCTTCCTCATGACGTTGATATGG
AAATAGCGGCCTTGGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGG
GCGGCGGTTATGAGGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGA
CATGAAATGGAATGGGCCATTTTCAAAATCAAAATGA

protein sequence of jgi.p|Nanoce1779_2|523259

>mRNA_1151-protein ID=mRNA_1151-protein|Name=jgi.p|Nanoce1779_2|523259|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MGGTAAKLGLIPLATLLETLPSAASSSSSSSSCPTPPLPPPPFLHRVPLP
KYRSERTPTTIVTLLVDACRDLLSQGGVRWEEVAAVGVGFPGHVNAAMAG
GAANLSEDWETGVPLTDLLKEGFRRHTGDGGQTTFLENIPSTIVLINDAD
AALAAEAWGGAARGHKDVVMLTLGTGIGVAVWLHGQAWSGSRGLVEGGHM
VVEKEGRKCGCGQRGCLEMYASATAVVRRAEEVGFQMRRSKQAKKDGDQN
GVLNAKRVFDAAFASPSDPLAMQVVEEAADYLGLGCLNLCRVLDPSLVLF
AGGMSGAGPRLVAMVKEKFVAHGWSILPHDVDMEIAALGGEQAGIWGSAR
AAVMRRGGRNEKGGREDMKWNGPFSKSK*

mRNA from alignment at scaffold_2:1357254..1358504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1151 ID=mRNA_1151|Name=jgi.p|Nanoce1779_2|523259|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp|location=Sequence derived from alignment at scaffold_2:1357254..1358504+ (Nannochloropsis oceanica)
ATGGGCGGAACCGCGGCCAAGTTGGGATTAATTCCCCTGGCCACACTCCT
CGAGACTCTTCCTTCAGCAGCCTCCTCCTCCTCATCCTCCTCCTCGTGCC
CAACCCCACCCCTTCCACCGCCGCCATTCCTGCACCGGGTGCCATTGCCC
AAGTATCGATCAGAGCGCACGCCCACGACTATTGTGACCTTGCTAGTCGA
TGCATGCAGGGATTTGCTGTCTCAGGGGGGCGTAAGATGGGAGGAAGTAG
CTGCTGTCGGGGTGGGGTTTCCTGGCCATGTCAACGCAGCCATGGCAGGA
GGGGCGGCCAATTTGAGCGAAGATTGGGAGACAGGCGTGCCGCTCACGGA
CCTCTTAAAAGAAGGATTCAGAAGGCATACAGGTGATGGTGGACAAACGA
CGTTTCTTGAAAACATTCCCTCCACCATTGTCCTTATCAATGACGCGGAT
GCTGCACTGGCAGCAGAGGCATGGGGTGGGGCTGCACGAGGTCACAAAGA
CGTCGTCATGCTCACATTAGGAACAGGGATTGGAGTAGCTGTATGGCTGC
ATGGACAAGCGTGGTCGGGCTCAAGGGGCTTGGTTGAGGGGGGGCACATG
GTGGTGGAGAAGGAGGGGAGAAAGTGTGGGTGCGGCCAAAGGGGATGCTT
GGAGATGTACGCGTCGGCGACGGCGGTGGTGCGGCGAGCCGAGGAAGTGG
GATTTCAGATGAGAAGATCAAAAGTAAGGGAAGAGAGGGGCGGCGACAAA
GGGGAGGCAGGAACTGCTGGAGGAGAAAGAGAACACGAAGGAGGGACGAC
TGTATCACTAAGGGAAGAGGTAGATGGGCAAAGAGAGCAAGCAAAAAAAG
ACGGAGACCAAAATGGTGTCCTGAATGCCAAGCGCGTTTTTGATGCGGCC
TTCGCTTCTCCATCTGACCCTCTGGCTATGCAAGTGGTGGAGGAAGCAGC
TGATTACCTGGGCTTGGGGTGTTTGAATTTATGTAGGGTGCTCGACCCCT
CGCTTGTTTTGTTTGCGGGCGGGATGAGTGGGGCAGGGCCTCGGCTGGTG
GCTATGGTGAAGGAAAAGTTTGTGGCCCATGGGTGGAGCATTCTTCCTCA
TGACGTTGATATGGAAATAGCGGCCTTGGGTGGGGAGCAGGCGGGAATCT
GGGGGTCGGCGCGGGCGGCGGTTATGAGGAGGGGAGGGAGAAATGAGAAA
GGAGGACGAGAGGACATGAAATGGAATGGGCCATTTTCAAAATCAAAATG
A

Coding sequence (CDS) from alignment at scaffold_2:1357254..1358504+

>mRNA_1151 ID=mRNA_1151|Name=jgi.p|Nanoce1779_2|523259|organism=Nannochloropsis oceanica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_2:1357254..1358504+ (Nannochloropsis oceanica)
ATGGGCGGAACCGCGGCCAAGTTGGGATTAATTCCCCTGGCCACACTCCT
CGAGACTCTTCCTTCAGCAGCCTCCTCCTCCTCATCCTCCTCCTCGTGCC
CAACCCCACCCCTTCCACCGCCGCCATTCCTGCACCGGGTGCCATTGCCC
AAGTATCGATCAGAGCGCACGCCCACGACTATTGTGACCTTGCTAGTCGA
TGCATGCAGGGATTTGCTGTCTCAGGGGGGCGTAAGATGGGAGGAAGTAG
CTGCTGTCGGGGTGGGGTTTCCTGGCCATGTCAACGCAGCCATGGCAGGA
GGGGCGGCCAATTTGAGCGAAGATTGGGAGACAGGCGTGCCGCTCACGGA
CCTCTTAAAAGAAGGATTCAGAAGGCATACAGGTGATGGTGGACAAACGA
CGTTTCTTGAAAACATTCCCTCCACCATTGTCCTTATCAATGACGCGGAT
GCTGCACTGGCAGCAGAGGCATGGGGTGGGGCTGCACGAGGTCACAAAGA
CGTCGTCATGCTCACATTAGGAACAGGGATTGGAGTAGCTGTATGGCTGC
ATGGACAAGCGTGGTCGGGCTCAAGGGGCTTGGTTGAGGGGGGGCACATG
GTGGTGGAGAAGGAGGGGAGAAAGTGTGGGTGCGGCCAAAGGGGATGCTT
GGAGATGTACGCGTCGGCGACGGCGGTGGTGCGGCGAGCCGAGGAAGTGG
GATTTCAGATGAGAAGATCAAAACAAGCAAAAAAAGACGGAGACCAAAAT
GGTGTCCTGAATGCCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATC
TGACCCTCTGGCTATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCT
TGGGGTGTTTGAATTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTT
GCGGGCGGGATGAGTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGA
AAAGTTTGTGGCCCATGGGTGGAGCATTCTTCCTCATGACGTTGATATGG
AAATAGCGGCCTTGGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGG
GCGGCGGTTATGAGGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGA
CATGAAATGGAATGGGCCATTTTCAAAATCAAAATGAATGGGCGGAACCG
CGGCCAAGTTGGGATTAATTCCCCTGGCCACACTCCTCGAGACTCTTCCT
TCAGCAGCCTCCTCCTCCTCATCCTCCTCCTCGTGCCCAACCCCACCCCT
TCCACCGCCGCCATTCCTGCACCGGGTGCCATTGCCCAAGTATCGATCAG
AGCGCACGCCCACGACTATTGTGACCTTGCTAGTCGATGCATGCAGGGAT
TTGCTGTCTCAGGGGGGCGTAAGATGGGAGGAAGTAGCTGCTGTCGGGGT
GGGGTTTCCTGGCCATGTCAACGCAGCCATGGCAGGAGGGGCGGCCAATT
TGAGCGAAGATTGGGAGACAGGCGTGCCGCTCACGGACCTCTTAAAAGAA
GGATTCAGAAGGCATACAGGTGATGGTGGACAAACGACGTTTCTTGAAAA
CATTCCCTCCACCATTGTCCTTATCAATGACGCGGATGCTGCACTGGCAG
CAGAGGCATGGGGTGGGGCTGCACGAGGTCACAAAGACGTCGTCATGCTC
ACATTAGGAACAGGGATTGGAGTAGCTGTATGGCTGCATGGACAAGCGTG
GTCGGGCTCAAGGGGCTTGGTTGAGGGGGGGCACATGGTGGTGGAGAAGG
AGGGGAGAAAGTGTGGGTGCGGCCAAAGGGGATGCTTGGAGATGTACGCG
TCGGCGACGGCGGTGGTGCGGCGAGCCGAGGAAGTGGGATTTCAGATGAG
AAGATCAAAACAAGCAAAAAAAGACGGAGACCAAAATGGTGTCCTGAATG
CCAAGCGCGTTTTTGATGCGGCCTTCGCTTCTCCATCTGACCCTCTGGCT
ATGCAAGTGGTGGAGGAAGCAGCTGATTACCTGGGCTTGGGGTGTTTGAA
TTTATGTAGGGTGCTCGACCCCTCGCTTGTTTTGTTTGCGGGCGGGATGA
GTGGGGCAGGGCCTCGGCTGGTGGCTATGGTGAAGGAAAAGTTTGTGGCC
CATGGGTGGAGCATTCTTCCTCATGACGTTGATATGGAAATAGCGGCCTT
GGGTGGGGAGCAGGCGGGAATCTGGGGGTCGGCGCGGGCGGCGGTTATGA
GGAGGGGAGGGAGAAATGAGAAAGGAGGACGAGAGGACATGAAATGGAAT
GGGCCATTTTCAAAATCAAAATGA

Synonyms

Publications