jgi.p|Nanoce1779_2|575531, mRNA_1150 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575531
Unique Name	mRNA_1150
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2340
Alignment location	scaffold_2:1354228..1356895 +

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Properties


Property Name	Value
TranscriptId	575617
Track	FilteredModels2
ProteinId	575531

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1354228..1356895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575531	gene_1150	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575531	mRNA_1150-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1150	CDS_1150	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1354228..1356895+
coding sequence from alignment at scaffold_2:1354228..1356895+

mRNA sequence

>mRNA_1150 ID=mRNA_1150|Name=jgi.p|Nanoce1779_2|575531|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp
ACAGACAGCTACGCTTCGTGGTTCTCGTATTTTGCTCGCGGCTGTTTCAT
ATAGTCATCATCGACGCAAGCCAGCCCGCCAGCCCTCGCTCCAAAACTTC
CTACCACAACTCAAGGAACCCATGGCTGACGAAGAGCATAGCAAGAAGTC
CAAGAAGCCCTCGGGTGCATTAAATGTGGAGCGTCGGACGTGGGACATTG
AGCACTTTCAGGAAGTGGCCAAGGAACGCCTGGAGAAGGAGGCTTCTGGG
GAAAGCGAGAAGAAAAAGCCAGGTTTCGTACGGAAACGCGAAGAATTTCA
ATCGGCAGAGCAGGGGGCGGCGGGACCCGAAGGCTCTAAGCGTGCTTACC
TCAAGCATCGTGAAGCGGACTTGGGGTTGGAAGATAAGGTCGGCAAAATC
CAAGTTGTCACGGGTAGCTCCGCCCCACATCAACAGGGGGGATATTGGTG
TGATATTTGTCAGTGTTTGTTGAAGGATTCAATGGCATATTTGGATCATA
TTAATGGAAAGAAGCATCAAAAGGCATTAGGGTTTAGTATGCGGGTTGAG
AGAGTGGGGGTGGATCGTGTGAAGGAAAGGCTTGGGGCCTTGAAACGACG
GGAAGAAGAGAGGAGGAATGCTGGGCCGAGAGAGAGTGCGATTAAGATTT
ACGAGCGGAAGTTGGAGGAGGAAGGGGCGGTGAAGGAGCAATGGAAGGAG
GCCAGAAAGGAGGCGCGAAGGAAGATTACCCAGCGGGCGGCGGAGGACGA
CGGGGAGGGAGGACAAGAAGAGGATGACGAGATGGCGGCTATGATGGGCT
TTGGTGGGTTTGGAGGAAAATAGACAGGCAGCAATGGCATAAAGGGGGAA
AACACGATGGCACAGAGTACTATATTCTTTTTTTTTCGAAGAACTTTTAT
CAATGTGTCGGCATTCGTTGGACACGAAGTAACTCCTAAGAAACTTTCTA
GTGCAAAGTCTAACAAGCGACTGCTCTTAGCGGAGTATGCGTGTAGTCAA
GAACATGGTATGTGATCTTGAAAATTGACAGTGCTCTTCCTCTTTTCCAC
CCAAGACCTATTGAAGATGAACGGAAGGTATTAAGATGTGCAAGAGCCCA
AGCACAAAGTTGACGCAGACTGTCCTGTAATGTTTTTGGGATATGGTACT
TTTTGATGCCTTACAAGGTGGAGGAAGAAGAGCAGGAAGAAAACAAAAGG
TGAGGGAGGGACCAGGTGGGGCGCTCGATCCCGAAGTGCACACTTTTCCG
ACATTATTCGGAGAAGAGGAGAAATCGCTCCTGGTATAATGGAAGAGATG
GGAGGGCGCGTGTGCCATGAAGGAGAAGATCGACGGCATCCGGGGAAGTA
TTGCAGCGTTAGAGAAATGGGCGTTGCGGATCGGGGAAAGAGTTGGAGCC
TGCAACGGGACATTAAGAGAGTAACCAAGGCTCGGTATCGCGCAAATGCA
AAAGGCAGCATGATGGTAAGTGATATCCATTTCGAGACGATCGCCTTTCT
CTTTCGACGCTTACGTTGTCATAGCTCCGAAATAGGGTGTTGGGAGGAAG
TTGGAGGGGAGAAGTGCTCTGACAGCAGGGGCCAAGGAGACGATGCGTTT
CCAACGACACACTCTCTTCAACCAGCGTATTGTTTGACAAGTATGAATCT
TTTCTGATCGCATGAGGCTTTTATCACGCCCGGTGTGCGTGAGGGGTGTA
GGTGGATGAAGGAAAAGGACTGGTTGGATGGATAGGGGGAGGGGCTGGTG
GGTGAGAGGCTGGAGAGTATCAGTGGGAAAGGCGATTGCAAATGCCACGC
AAGCAGGCGGCACATACGCTTTTTCCAGGCTCCTTTTTCACTTCTCTGTC
CCCGCGGTACTGCCTCCAACGTAGTGTGACGTGACGGCTTCCTGCATATC
TTTATTAGCGTAATTGTGGGTGTGGTTGGGAGTGGGTGAGTGTGGAGTAT
AAGTGATAGATGCAATGAGCAATTGTAACTGCCACGCGAGGGGGGCGGCA
CATATGCTTTTCCCCGCCTCCTTTTTCACTCCTCTATCCTCGCGGTACGG
TTCCCATTGTAAGATGGCCTGTGCTCTTGTAGATGTGGGTGTGGGTGTGG
GGGGATGGGGAGTATCAGTGTGTGAGCGAATGCAAATGCTACGCAAGTCG
GCGGCACGTACGCTTGGTGCTGTCGCCGAGAGGCTGGCGCAACCTGTGTG
AGACTCTAAGCTGAAGAGGAAAGAAGTACTGCCTAGTCACACACAATTTT
AACAGAGCAACAAGTAATTGACATATTTAAGTATGGAACCCAGGCCGGGG
GATGCATGCAGCCCGAATGCAGCGGCTCAACGAAGGCGAG

protein sequence of jgi.p|Nanoce1779_2|575531

>mRNA_1150-protein ID=mRNA_1150-protein|Name=jgi.p|Nanoce1779_2|575531|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MADEEHSKKSKKPSGALNVERRTWDIEHFQEVAKERLEKEASGESEKKKP
GFVRKREEFQSAEQGAAGPEGSKRAYLKHREADLGLEDKVGKIQVVTGSS
APHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGFSMRVERVGVDRV
KERLGALKRREEERRNAGPRESAIKIYERKLEEEGAVKEQWKEARKEARR
KITQRAAEDDGEGGQEEDDEMAAMMGFGGFGGK*

mRNA from alignment at scaffold_2:1354228..1356895+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1150 ID=mRNA_1150|Name=jgi.p|Nanoce1779_2|575531|organism=Nannochloropsis oceanica|type=mRNA|length=2668bp|location=Sequence derived from alignment at scaffold_2:1354228..1356895+ (Nannochloropsis oceanica)
ACAGACAGCTACGCTTCGTGGTTCTCGTATTTTGCTCGCGGCTGTTTCAT
ATAGTCATCATCGACGCAAGCCAGCCCGCCAGCCCTCGCTCCAAAACTTC
CTACCACAACTCAAGGAACCCATGGCTGACGAAGAGCATAGCAAGAAGTC
CAAGAAGCCCTCGGGTGCATTAAATGTGGAGCGTCGGACGTGGGACATTG
AGCACTTTCAGGAAGTGGCCAAGGAACGCCTGGAGAAGGTATGTAGCAGC
GCGGGTAGTCCTGCCCACGTTGGCCTCTTCTTTACCCTTTTTCTCCTCCA
CCCTACTAACCATCCCATCTCACTTTGCCACTTCATTATGCTCAACATTA
ATGCCCTGTCTTGTTATGTGCGCAGCCTCAGTCCTTTTCCTTCTTCAACC
TCCACTCACCCCACCGCACCGCACCGCACACACCGCGCAAATAACAGGAG
GCTTCTGGGGAAAGCGAGAAGAAAAAGCCAGGTTTCGTACGGAAACGCGA
AGAATTTCAATCGGCAGAGCAGGGGGCGGCGGGACCCGAAGGCTCTAAGC
GTGCTTACCTCAAGCATCGTGAAGCGGACTTGGGGTTGGAAGATAAGGTC
GGCAAAATCCAAGTTGTCACGGGTAGCTCCGCCCCACATCAACAGGGGGG
ATATTGGTGTGATATTTGTCAGTGTTTGTTGAAGGATTCAATGGCATATT
TGGATCATATTAATGGAAAGAAGCATCAAAAGGCATTAGGGTTTAGTATG
CGGGTTGAGAGAGTGGGGGTGGATCGTGTGAAGGAAAGGCTTGGGGCCTT
GAAACGACGGGAAGAAGAGAGGAGGAATGCTGGGCCGAGAGAGAGTGCGA
TTAAGATTTACGAGCGGAAGTTGGAGGAGGAAGGGGCGGTGAAGGAGCAA
TGGAAGGAGGCCAGAAAGGAGGCGCGAAGGAAGATTACCCAGCGGGCGGC
GGAGGACGACGGGGAGGGAGGACAAGAAGAGGATGACGAGATGGCGGCTA
TGATGGGCTTTGGTGGGTTTGGAGGAAAATAGGTAGGAACATGGGGTGGG
TGAGAGGGTTTTTGATGTGTACATATGTTTGATTGGTGGGAAGGGCTGCC
AGAGAGGCAGGAAATCGCAAGTATCAAAAAAAAAAAGCACACACAACGTA
GACAGGCAGCAATGGCATAAAGGGGGAAAACACGATGGCACAGAGTACTA
TATTCTTTTTTTTTCGAAGAACTTTTATCAATGTGTCGGCATTCGTTGGA
CACGAAGTAACTCCTAAGAAACTTTCTAGTGCAAAGTCTAACAAGCGACT
GCTCTTAGCGGAGTATGCGTGTAGTCAAGAACATGGTATGTGATCTTGAA
AATTGACAGTGCTCTTCCTCTTTTCCACCCAAGACCTATTGAAGATGAAC
GGAAGGTATTAAGATGTGCAAGAGCCCAAGCACAAAGTTGACGCAGACTG
TCCTGTAATGTTTTTGGGATATGGTACTTTTTGATGCCTTACAAGGTGGA
GGAAGAAGAGCAGGAAGAAAACAAAAGGTGAGGGAGGGACCAGGTGGGGC
GCTCGATCCCGAAGTGCACACTTTTCCGACATTATTCGGAGAAGAGGAGA
AATCGCTCCTGGTATAATGGAAGAGATGGGAGGGCGCGTGTGCCATGAAG
GAGAAGATCGACGGCATCCGGGGAAGTATTGCAGCGTTAGAGAAATGGGC
GTTGCGGATCGGGGAAAGAGTTGGAGCCTGCAACGGGACATTAAGAGAGT
AACCAAGGCTCGGTATCGCGCAAATGCAAAAGGCAGCATGATGGTAAGTG
ATATCCATTTCGAGACGATCGCCTTTCTCTTTCGACGCTTACGTTGTCAT
AGCTCCGAAATAGGGTGTTGGGAGGAAGTTGGAGGGGAGAAGTGCTCTGA
CAGCAGGGGCCAAGGAGACGATGCGTTTCCAACGACACACTCTCTTCAAC
CAGCGTATTGTTTGACAAGTATGAATCTTTTCTGATCGCATGAGGCTTTT
ATCACGCCCGGTGTGCGTGAGGGGTGTAGGTGGATGAAGGAAAAGGACTG
GTTGGATGGATAGGGGGAGGGGCTGGTGGGTGAGAGGCTGGAGAGTATCA
GTGGGAAAGGCGATTGCAAATGCCACGCAAGCAGGCGGCACATACGCTTT
TTCCAGGCTCCTTTTTCACTTCTCTGTCCCCGCGGTACTGCCTCCAACGT
AGTGTGACGTGACGGCTTCCTGCATATCTTTATTAGCGTAATTGTGGGTG
TGGTTGGGAGTGGGTGAGTGTGGAGTATAAGTGATAGATGCAATGAGCAA
TTGTAACTGCCACGCGAGGGGGGCGGCACATATGCTTTTCCCCGCCTCCT
TTTTCACTCCTCTATCCTCGCGGTACGGTTCCCATTGTAAGATGGCCTGT
GCTCTTGTAGATGTGGGTGTGGGTGTGGGGGGATGGGGAGTATCAGTGTG
TGAGCGAATGCAAATGCTACGCAAGTCGGCGGCACGTACGCTTGGTGCTG
TCGCCGAGAGGCTGGCGCAACCTGTGTGAGACTCTAAGCTGAAGAGGAAA
GAAGTACTGCCTAGTCACACACAATTTTAACAGAGCAACAAGTAATTGAC
ATATTTAAGTATGGAACCCAGGCCGGGGGATGCATGCAGCCCGAATGCAG
CGGCTCAACGAAGGCGAG

Coding sequence (CDS) from alignment at scaffold_2:1354228..1356895+

>mRNA_1150 ID=mRNA_1150|Name=jgi.p|Nanoce1779_2|575531|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_2:1354228..1356895+ (Nannochloropsis oceanica)
ATGGCTGACGAAGAGCATAGCAAGAAGTCCAAGAAGCCCTCGGGTGCATT
AAATGTGGAGCGTCGGACGTGGGACATTGAGCACTTTCAGGAAGTGGCCA
AGGAACGCCTGGAGAAGGAGGCTTCTGGGGAAAGCGAGAAGAAAAAGCCA
GGTTTCGTACGGAAACGCGAAGAATTTCAATCGGCAGAGCAGGGGGCGGC
GGGACCCGAAGGCTCTAAGCGTGCTTACCTCAAGCATCGTGAAGCGGACT
TGGGGTTGGAAGATAAGGTCGGCAAAATCCAAGTTGTCACGGGTAGCTCC
GCCCCACATCAACAGGGGGGATATTGGTGTGATATTTGTCAGTGTTTGTT
GAAGGATTCAATGGCATATTTGGATCATATTAATGGAAAGAAGCATCAAA
AGGCATTAGGGTTTAGTATGCGGGTTGAGAGAGTGGGGGTGGATCGTGTG
AAGGAAAGGCTTGGGGCCTTGAAACGACGGGAAGAAGAGAGGAGGAATGC
TGGGCCGAGAGAGAGTGCGATTAAGATTTACGAGCGGAAGTTGGAGGAGG
AAGGGGCGGTGAAGGAGCAATGGAAGGAGGCCAGAAAGGAGGCGCGAAGG
AAGATTACCCAGCGGGCGGCGGAGGACGACGGGGAGGGAGGACAAGAAGA
GGATGACGAGATGGCGGCTATGATGGGCTTTGGTGGGTTTGGAGGAAAAT
AGATGGCTGACGAAGAGCATAGCAAGAAGTCCAAGAAGCCCTCGGGTGCA
TTAAATGTGGAGCGTCGGACGTGGGACATTGAGCACTTTCAGGAAGTGGC
CAAGGAACGCCTGGAGAAGGAGGCTTCTGGGGAAAGCGAGAAGAAAAAGC
CAGGTTTCGTACGGAAACGCGAAGAATTTCAATCGGCAGAGCAGGGGGCG
GCGGGACCCGAAGGCTCTAAGCGTGCTTACCTCAAGCATCGTGAAGCGGA
CTTGGGGTTGGAAGATAAGGTCGGCAAAATCCAAGTTGTCACGGGTAGCT
CCGCCCCACATCAACAGGGGGGATATTGGTGTGATATTTGTCAGTGTTTG
TTGAAGGATTCAATGGCATATTTGGATCATATTAATGGAAAGAAGCATCA
AAAGGCATTAGGGTTTAGTATGCGGGTTGAGAGAGTGGGGGTGGATCGTG
TGAAGGAAAGGCTTGGGGCCTTGAAACGACGGGAAGAAGAGAGGAGGAAT
GCTGGGCCGAGAGAGAGTGCGATTAAGATTTACGAGCGGAAGTTGGAGGA
GGAAGGGGCGGTGAAGGAGCAATGGAAGGAGGCCAGAAAGGAGGCGCGAA
GGAAGATTACCCAGCGGGCGGCGGAGGACGACGGGGAGGGAGGACAAGAA
GAGGATGACGAGATGGCGGCTATGATGGGCTTTGGTGGGTTTGGAGGAAA
ATAG

Synonyms

Publications