jgi.p|Nanoce1779_2|576267, mRNA_115 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576267
Unique Name	mRNA_115
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1501
Alignment location	scaffold_3:307726..309537 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576353
Track	FilteredModels2
ProteinId	576267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:307726..309537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576267	gene_115	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576267	mRNA_115-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_115	CDS_115	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:307726..309537+
coding sequence from alignment at scaffold_3:307726..309537+

mRNA sequence

>mRNA_115 ID=mRNA_115|Name=jgi.p|Nanoce1779_2|576267|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
AGCGCGTTTGCGGGCCAAATCAAGAACAGGTCAATTGCGGATAAGGAGCT
GTCGATACGCACCGCCTGTCTTTTTGAGCCGGAGGCGTCCGTGCTTGGCT
ACTTCAGTGGGGAAAGACTTGATAACGAGAGGGACTTGCTGCATATTCGT
GGTGCGTGGGTGCGTCCTCGTACTTACTTTGTGTCTGGCGGCGGTGCCCC
GCCCTGCCTGACCGCCTCCGCCGCCGCCGCACTCCTCCTTCTCCTCTTCC
TCCTCTTTCTCCTCTTCCTCCTCCTCCTACCAGCTTTCCTCCTCCTACTC
TAGCCATTATTCCACATTATCAGCACCATGGCAGAAGACACGTCAGCCAC
CCCTCTAGACATGTCCTTCCTCGATGCCGTCCCTCACACTTACCGCCTCC
TCGCTTCTGGGGGCATTGCGGGTTGCGTGGCCAAAACCATGACAGCGCCC
CTAAGTCGCCTCACAATTTTATTCCAAGTTAATAGTGCCTTGCACGTGGG
GGGCCGGCCGCAGTACGCCAGTGGACTGTTGCCGGCTTTGAGGAAGGTGA
TGCGTGAGGAGGGGTTTTGGGCCTTCTGGAAGGGCAACGGCACGAGTGTC
CTACATCGCTTTCCCTACGCAGGCATAAATTTCTATTGTTACGAAAAGTT
CAAAGAAGCGTTGGGGGATGGCTCGCCGCGAAACGAGACCCCCTTCACGC
GCCTCGTCGCTGGGGCCTGCGCGGGAGGAGTGGCGTGCTCTGCGTGTTAC
CCGCTTGACTTGATCCGGACAAGACTGACCATTCAAGACGAGGGTCCTCA
CAAGGAGTACCGTTCGATTACACACGCCTTTCGAAAGATAGCGGCGGTGG
AAGGGATGGGGGGGTTGTATCGGGGGCTTGGGACGACTTTGATGGTGGCG
GTACCGAATTTAGCGATTAGTTATTGTATTTATGGGACGATGAAGGAGTT
TATATTTCACTACAAATACCCCACGAGGGATGTCATGGAGGCGACGTTGG
AAGAGCCACATTTTGTGGAGAGCCTGGTGTGCGGGGCCACGAGTGGTATT
TGCTCCAGCTTGATAACCTATCCGATGGACGTGATTCGGAGGCGGTTACA
GATTTTGGGTGTGCATCCAGGGTGCCATCGGCCGGGGGAGTCGGTGGGGC
CTTGGAATGAGTTGAGGACCATAGTGAGGAATGAGGGGGCGACTGGTTTG
TACCGGGGGCTGGTGCCGGAATTGTTGAAAGTGACTCCCATGGTGGGGTG
CACTTTCACGACGTACGAGCTTATGAAAGATGTGTTGGGTGTGTAGAAGG
GAGATGGACTTTGGGTTTTATGCATCCTGTGTGCGTGGAATGGTGGGGGC
GAATCCCGAGAGATGGACGCGGAGAATTAAGTAGTTGGAAGCTGCAGTAA
GAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTG
AGATGGGCGGCAGCAAACACCAAATGATGACAATCGAGTACACCAAATAC
G

protein sequence of jgi.p|Nanoce1779_2|576267

>mRNA_115-protein ID=mRNA_115-protein|Name=jgi.p|Nanoce1779_2|576267|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MAEDTSATPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQ
VNSALHVGGRPQYASGLLPALRKVMREEGFWAFWKGNGTSVLHRFPYAGI
NFYCYEKFKEALGDGSPRNETPFTRLVAGACAGGVACSACYPLDLIRTRL
TIQDEGPHKEYRSITHAFRKIAAVEGMGGLYRGLGTTLMVAVPNLAISYC
IYGTMKEFIFHYKYPTRDVMEATLEEPHFVESLVCGATSGICSSLITYPM
DVIRRRLQILGVHPGCHRPGESVGPWNELRTIVRNEGATGLYRGLVPELL
KVTPMVGCTFTTYELMKDVLGV*

mRNA from alignment at scaffold_3:307726..309537+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_115 ID=mRNA_115|Name=jgi.p|Nanoce1779_2|576267|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at scaffold_3:307726..309537+ (Nannochloropsis oceanica)
AGCGCGTTTGCGGGCCAAATCAAGAACAGGTCAATTGCGGATAAGGAGCT
GTCGATACGCACCGCCTGTCTTTTTGAGCCGGAGGCGTCCGTGCTTGGCT
ACTTCAGGTACGGTATACAAATGTGCATGCTGATTCTGAAATGAATGCCG
CTATTGCTGCCCTCCACCAAGCGCAAAGAGAGCTCATATGATATACACAT
CTCTAACACGGCAATTTATAGTGGGGAAAGACTTGATAACGAGAGGGACT
TGCTGCATATTCGTGGTGCGTGGGTGCGTCCTCGTACTTACTTTGTGTCT
GGCGGCGGTGCCCCGCCCTGCCTGACCGCCTCCGCCGCCGCCGCACTCCT
CCTTCTCCTCTTCCTCCTCTTTCTCCTCTTCCTCCTCCTCCTACCAGCTT
TCCTCCTCCTACTCTAGCCATTATTCCACATTATCAGCACCATGGCAGAA
GACACGTCAGCCACCCCTCTAGACATGTCCTTCCTCGATGCCGTCCCTCA
CACTTACCGCCTCCTCGCTTCTGGGGGCATTGCGGGTTGCGTGGCCAAAA
CCATGACAGCGCCCCTAAGTCGCCTCACAATTTTATTCCAAGTTAATAGT
GCCTTGCACGTGGGGGGCCGGCCGCAGTACGCCAGTGGACTGTTGCCGGC
TTTGAGGAAGGTGATGCGTGAGGAGGGGTTTTGGGCCTTCTGGAAGGTGA
GTAGAGGGAGGGAGAGAGGGAGGGAGGATTCAATAGGTTGGCTATATATG
GTCGCTGACGTTGGGGTGGTGGTCAACAAGTAAAGGCTGCTACCAAAAGA
GCTTAAAGGAGGAAGCCTTTGGCTCACTCACACAGTCACCCATCTCCCTC
CCTCCCCAACTCCTCCTGTCTTCCTCTACCCCTCCTCCCTTAGGGCAACG
GCACGAGTGTCCTACATCGCTTTCCCTACGCAGGCATAAATTTCTATTGT
TACGAAAAGTTCAAAGAAGCGTTGGGGGATGGCTCGCCGCGAAACGAGAC
CCCCTTCACGCGCCTCGTCGCTGGGGCCTGCGCGGGAGGAGTGGCGTGCT
CTGCGTGTTACCCGCTTGACTTGATCCGGACAAGACTGACCATTCAAGAC
GAGGGTCCTCACAAGGAGTACCGTTCGATTACACACGCCTTTCGAAAGAT
AGCGGCGGTGGAAGGGATGGGGGGGTTGTATCGGGGGCTTGGGACGACTT
TGATGGTGGCGGTACCGAATTTAGCGATTAGTTATTGTATTTATGGGACG
ATGAAGGAGTTTATATTTCACTACAAATACCCCACGAGGGATGTCATGGA
GGCGACGTTGGAAGAGCCACATTTTGTGGAGAGCCTGGTGTGCGGGGCCA
CGAGTGGTATTTGCTCCAGCTTGATAACCTATCCGATGGACGTGATTCGG
AGGCGGTTACAGATTTTGGGTGTGCATCCAGGGTGCCATCGGCCGGGGGA
GTCGGTGGGGCCTTGGAATGAGTTGAGGACCATAGTGAGGAATGAGGGGG
CGACTGGTTTGTACCGGGGGCTGGTGCCGGAATTGTTGAAAGTGACTCCC
ATGGTGGGGTGCACTTTCACGACGTACGAGCTTATGAAAGATGTGTTGGG
TGTGTAGAAGGGAGATGGACTTTGGGTTTTATGCATCCTGTGTGCGTGGA
ATGGTGGGGGCGAATCCCGAGAGATGGACGCGGAGAATTAAGTAGTTGGA
AGCTGCAGTAAGAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGTGAGATGGGCGGCAGCAAACACCAAATGATGACAATCGAGT
ACACCAAATACG

Coding sequence (CDS) from alignment at scaffold_3:307726..309537+

>mRNA_115 ID=mRNA_115|Name=jgi.p|Nanoce1779_2|576267|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_3:307726..309537+ (Nannochloropsis oceanica)
ATGGCAGAAGACACGTCAGCCACCCCTCTAGACATGTCCTTCCTCGATGC
CGTCCCTCACACTTACCGCCTCCTCGCTTCTGGGGGCATTGCGGGTTGCG
TGGCCAAAACCATGACAGCGCCCCTAAGTCGCCTCACAATTTTATTCCAA
GTTAATAGTGCCTTGCACGTGGGGGGCCGGCCGCAGTACGCCAGTGGACT
GTTGCCGGCTTTGAGGAAGGTGATGCGTGAGGAGGGGTTTTGGGCCTTCT
GGAAGGGCAACGGCACGAGTGTCCTACATCGCTTTCCCTACGCAGGCATA
AATTTCTATTGTTACGAAAAGTTCAAAGAAGCGTTGGGGGATGGCTCGCC
GCGAAACGAGACCCCCTTCACGCGCCTCGTCGCTGGGGCCTGCGCGGGAG
GAGTGGCGTGCTCTGCGTGTTACCCGCTTGACTTGATCCGGACAAGACTG
ACCATTCAAGACGAGGGTCCTCACAAGGAGTACCGTTCGATTACACACGC
CTTTCGAAAGATAGCGGCGGTGGAAGGGATGGGGGGGTTGTATCGGGGGC
TTGGGACGACTTTGATGGTGGCGGTACCGAATTTAGCGATTAGTTATTGT
ATTTATGGGACGATGAAGGAGTTTATATTTCACTACAAATACCCCACGAG
GGATGTCATGGAGGCGACGTTGGAAGAGCCACATTTTGTGGAGAGCCTGG
TGTGCGGGGCCACGAGTGGTATTTGCTCCAGCTTGATAACCTATCCGATG
GACGTGATTCGGAGGCGGTTACAGATTTTGGGTGTGCATCCAGGGTGCCA
TCGGCCGGGGGAGTCGGTGGGGCCTTGGAATGAGTTGAGGACCATAGTGA
GGAATGAGGGGGCGACTGGTTTGTACCGGGGGCTGGTGCCGGAATTGTTG
AAAGTGACTCCCATGGTGGGGTGCACTTTCACGACGTACGAGCTTATGAA
AGATGTGTTGGGTGTGTAGATGGCAGAAGACACGTCAGCCACCCCTCTAG
ACATGTCCTTCCTCGATGCCGTCCCTCACACTTACCGCCTCCTCGCTTCT
GGGGGCATTGCGGGTTGCGTGGCCAAAACCATGACAGCGCCCCTAAGTCG
CCTCACAATTTTATTCCAAGTTAATAGTGCCTTGCACGTGGGGGGCCGGC
CGCAGTACGCCAGTGGACTGTTGCCGGCTTTGAGGAAGGTGATGCGTGAG
GAGGGGTTTTGGGCCTTCTGGAAGGGCAACGGCACGAGTGTCCTACATCG
CTTTCCCTACGCAGGCATAAATTTCTATTGTTACGAAAAGTTCAAAGAAG
CGTTGGGGGATGGCTCGCCGCGAAACGAGACCCCCTTCACGCGCCTCGTC
GCTGGGGCCTGCGCGGGAGGAGTGGCGTGCTCTGCGTGTTACCCGCTTGA
CTTGATCCGGACAAGACTGACCATTCAAGACGAGGGTCCTCACAAGGAGT
ACCGTTCGATTACACACGCCTTTCGAAAGATAGCGGCGGTGGAAGGGATG
GGGGGGTTGTATCGGGGGCTTGGGACGACTTTGATGGTGGCGGTACCGAA
TTTAGCGATTAGTTATTGTATTTATGGGACGATGAAGGAGTTTATATTTC
ACTACAAATACCCCACGAGGGATGTCATGGAGGCGACGTTGGAAGAGCCA
CATTTTGTGGAGAGCCTGGTGTGCGGGGCCACGAGTGGTATTTGCTCCAG
CTTGATAACCTATCCGATGGACGTGATTCGGAGGCGGTTACAGATTTTGG
GTGTGCATCCAGGGTGCCATCGGCCGGGGGAGTCGGTGGGGCCTTGGAAT
GAGTTGAGGACCATAGTGAGGAATGAGGGGGCGACTGGTTTGTACCGGGG
GCTGGTGCCGGAATTGTTGAAAGTGACTCCCATGGTGGGGTGCACTTTCA
CGACGTACGAGCTTATGAAAGATGTGTTGGGTGTGTAG

Synonyms

Publications