jgi.p|Nanoce1779_2|575529, mRNA_1149 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575529
Unique Name	mRNA_1149
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2171
Alignment location	scaffold_2:1351923..1354093 -

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Properties


Property Name	Value
TranscriptId	575615
Track	FilteredModels2
ProteinId	575529

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1351923..1354093 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575529	gene_1149	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575529	mRNA_1149-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1149	CDS_1149	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1351923..1354093-
coding sequence from alignment at scaffold_2:1351923..1354093-

mRNA sequence

>mRNA_1149 ID=mRNA_1149|Name=jgi.p|Nanoce1779_2|575529|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp
CCCAAACAAATGTTCCGAGCGGCGTCAACCCTCCCTTTTTCTCACTTAAA
ACTTACTCACGCAACACAGTTTCGCCCCTCCCCTCACCGATATCTCGCAG
CTCCATCTTCGAAATTCATATCTGCCCTAACCTCGTTGTCATCGCTCGAG
CAGATTGCCAAGCATCACACGCGTACATCACCCGTTGAGCGCCTACCCCC
CACTGACACCCGTCCGTCAACACGAAGCAAAGCATGTCTTCCTTACTCCG
ACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAGCACCAACGCTCCTCGTC
GCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAACCTTGCCTGAAATTGCC
ACACCCACCTGTGGCCTGGACGCGACGCAACTCGAGTATTTTTCGCTAGC
GCACTCGTTTGCCAAGAACGAGTTGACCCCGGCCCTGGCCTCGGAATGGG
ACAGCAAGGAAATTTTTCCTGTGGAAACCATGCAGAAAGCGGCCGAATTA
GGATTTGGGGCGGTGTTTGTGAGGGAGGACGTGGGGGGGAGTGGCATGTC
ACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTTGGCTGCAGGATGCACCA
GCACAGCGGCGTATTTGACGATTCACTCTATGTGTGGGTGGATGCTGGAC
ACGCTCGGTACGGAGGAGCAACGCCTGAAGTGGTTGCCCAAGATGGCGAC
GATGGAGTTTTTTTCTTCGTATTGTTTGACGGAACCCAATAGTGGCAGTG
ATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGGACGGCGATTCCTACATT
ATAAACGGCAGCAAGGCCTTTATCAGTGGCGCAGGGGTAAGTGACCTGTA
CTTGGTAATGTGTCGAACAGGGGGGAAGGGCCCTGGTGGCATCTCATGCG
TGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTTTTGGGGTACCAGAAAAA
AAGATGGGATGGAAGTCGCAGCCGACAGCGACAGTGAGTTTTGAGGATGT
CCGGGTGCCGATAGGTAATTTGGTGGGGAAGGAGGGAGAGGGTTTTAAAT
ATGCGATGAGAGGGTTGGATGGGGGGAGAATTAACATTGCAACTTGTAGT
GTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACGCGGGCGTACATCACGGA
AAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAATCAGTATGTGCAGTTTA
AATTTGCAGACATGGCGACTGCATTGGTGGGGGCGCGCTTGATGGTTAGG
GAGGCGGCGAGAATGCTTGATCGAAAGGACCCGGAGGCGAGTGCCATGTG
CGCGATGGCAAAGAGGGTGGCGACGGACGTGGCGTTCAACGTATGTAATG
ACGCTGTTCAGTTGCATGGGGGCTATGGGTATTTGAAGGATTATCACGTG
GAGAGGTACTTGAGAGACGTGAGGGTGCATCAGATCTTGGAGGGGACGAA
TGAGATAATGAGGGTGATTGTGGCGAGGAAGCTGTTGCAGGGAGAGTAGA
GAGGAGGGAGGGGGAAGTGAAGGGAAACTAGGAGGAAGGAAAGAGGTAGT
CGCTGGCGTGGGTTGTACACTTTTACAGTGAGAGATGGAATGTGGAGAAT
GTCACTACGTGTGTCATGTAGATTGCAATAGGGAAGAAGTGGAAAAGAGG
TAGGGTGGGTGGGACGAGGAGGGATGGCGACGAAAAAATAAGGTGTTGGT
ACAAAGCATAGAATATTGTACAGGGGTCGAAATGTACGCGTGCTTGAGTG
TGATAGTGTGATAGTAATGTAGTCAATAGTTCTTTTTGCCGCCGCTCCTA
CATCCCTCTAGAACTATCGCATGCAACCTGCGTCCTCTAGGACTTGCATA
CGAGGGGGAGCCTTCCAACAAGAAATTGTTGCATATTCATCCCTTATTTT
TGTCCGAGTTTTACTAGCGACTTTGACAGGTCTTCATGAGGCAAAGTCAA
TAGGGGCCATTTACTCATTATGTGGACCACATTGTGAGGGAGGGTAAGAG
TCGGGAGGTTGGCTTGTATAAAAATAAATAAATATAAACAGTGAGATAAG
GAATACAGGGAAATACAGAGGCTTGCAAAAAGAAAAAAGATGTGGAGATG
GGACGAATTGGAATGGTGGTTTCGCTTTCGTGTCTTATCCCCCCGGGAAA
ACCGTGCCCTCCTATTGAACG

protein sequence of jgi.p|Nanoce1779_2|575529

>mRNA_1149-protein ID=mRNA_1149-protein|Name=jgi.p|Nanoce1779_2|575529|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MSSLLRLSRRCLLSTCSTNAPRRLLLPSSSTFSTLPEIATPTCGLDATQL
EYFSLAHSFAKNELTPALASEWDSKEIFPVETMQKAAELGFGAVFVREDV
GGSGMSRLEGSIVFEALAAGCTSTAAYLTIHSMCGWMLDTLGTEEQRLKW
LPKMATMEFFSSYCLTEPNSGSDAGSLSTKAVRDGDSYIINGSKAFISGA
GVSDLYLVMCRTGGKGPGGISCVVVEKGTPGLSFGVPEKKMGWKSQPTAT
VSFEDVRVPIGNLVGKEGEGFKYAMRGLDGGRINIATCSVGAAQACLERT
RAYITERKQFGRAVGDNQYVQFKFADMATALVGARLMVREAARMLDRKDP
EASAMCAMAKRVATDVAFNVCNDAVQLHGGYGYLKDYHVERYLRDVRVHQ
ILEGTNEIMRVIVARKLLQGE*

mRNA from alignment at scaffold_2:1351923..1354093-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1149 ID=mRNA_1149|Name=jgi.p|Nanoce1779_2|575529|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp|location=Sequence derived from alignment at scaffold_2:1351923..1354093- (Nannochloropsis oceanica)
CCCAAACAAATGTTCCGAGCGGCGTCAACCCTCCCTTTTTCTCACTTAAA
ACTTACTCACGCAACACAGTTTCGCCCCTCCCCTCACCGATATCTCGCAG
CTCCATCTTCGAAATTCATATCTGCCCTAACCTCGTTGTCATCGCTCGAG
CAGATTGCCAAGCATCACACGCGTACATCACCCGTTGAGCGCCTACCCCC
CACTGACACCCGTCCGTCAACACGAAGCAAAGCATGTCTTCCTTACTCCG
ACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAGCACCAACGCTCCTCGTC
GCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAACCTTGCCTGAAATTGCC
ACACCCACCTGTGGCCTGGACGCGACGCAACTCGAGTATTTTTCGCTAGC
GCACTCGTTTGCCAAGAACGAGTTGACCCCGGCCCTGGCCTCGGAATGGG
ACAGCAAGGAAATTTTTCCTGTGGAAACCATGCAGAAAGCGGCCGAATTA
GGATTTGGGGCGGTGTTTGTGAGGGAGGACGTGGGGGGGAGTGGCATGTC
ACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTTGGCTGCAGGATGCACCA
GCACAGCGGCGTATTTGACGATTCACTCTATGTGTGGGTGGATGCTGGAC
ACGCTCGGTACGGAGGAGCAACGCCTGAAGTGGTTGCCCAAGATGGCGAC
GATGGAGTTTTTTTCTTCGTATTGTTTGACGGAACCCAATAGTGGCAGTG
ATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGGACGGCGATTCCTACATT
ATAAACGGCAGCAAGGCCTTTATCAGTGGCGCAGGGGTAAGTGACCTGTA
CTTGGTAATGTGTCGAACAGGGGGGAAGGGCCCTGGTGGCATCTCATGCG
TGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTTTTGGGGTACCAGAAAAA
AAGATGGGATGGAAGTCGCAGCCGACAGCGACAGTGAGTTTTGAGGATGT
CCGGGTGCCGATAGGTAATTTGGTGGGGAAGGAGGGAGAGGGTTTTAAAT
ATGCGATGAGAGGGTTGGATGGGGGGAGAATTAACATTGCAACTTGTAGT
GTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACGCGGGCGTACATCACGGA
AAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAATCAGTATGTGCAGTTTA
AATTTGCAGACATGGCGACTGCATTGGTGGGGGCGCGCTTGATGGTTAGG
GAGGCGGCGAGAATGCTTGATCGAAAGGACCCGGAGGCGAGTGCCATGTG
CGCGATGGCAAAGAGGGTGGCGACGGACGTGGCGTTCAACGTATGTAATG
ACGCTGTTCAGTTGCATGGGGGCTATGGGTATTTGAAGGATTATCACGTG
GAGAGGTACTTGAGAGACGTGAGGGTGCATCAGATCTTGGAGGGGACGAA
TGAGATAATGAGGGTGATTGTGGCGAGGAAGCTGTTGCAGGGAGAGTAGA
GAGGAGGGAGGGGGAAGTGAAGGGAAACTAGGAGGAAGGAAAGAGGTAGT
CGCTGGCGTGGGTTGTACACTTTTACAGTGAGAGATGGAATGTGGAGAAT
GTCACTACGTGTGTCATGTAGATTGCAATAGGGAAGAAGTGGAAAAGAGG
TAGGGTGGGTGGGACGAGGAGGGATGGCGACGAAAAAATAAGGTGTTGGT
ACAAAGCATAGAATATTGTACAGGGGTCGAAATGTACGCGTGCTTGAGTG
TGATAGTGTGATAGTAATGTAGTCAATAGTTCTTTTTGCCGCCGCTCCTA
CATCCCTCTAGAACTATCGCATGCAACCTGCGTCCTCTAGGACTTGCATA
CGAGGGGGAGCCTTCCAACAAGAAATTGTTGCATATTCATCCCTTATTTT
TGTCCGAGTTTTACTAGCGACTTTGACAGGTCTTCATGAGGCAAAGTCAA
TAGGGGCCATTTACTCATTATGTGGACCACATTGTGAGGGAGGGTAAGAG
TCGGGAGGTTGGCTTGTATAAAAATAAATAAATATAAACAGTGAGATAAG
GAATACAGGGAAATACAGAGGCTTGCAAAAAGAAAAAAGATGTGGAGATG
GGACGAATTGGAATGGTGGTTTCGCTTTCGTGTCTTATCCCCCCGGGAAA
ACCGTGCCCTCCTATTGAACG

Coding sequence (CDS) from alignment at scaffold_2:1351923..1354093-

>mRNA_1149 ID=mRNA_1149|Name=jgi.p|Nanoce1779_2|575529|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_2:1351923..1354093- (Nannochloropsis oceanica)
ATGTCTTCCTTACTCCGACTTTCCAGGCGCTGTCTCCTCTCCACCTGCAG
CACCAACGCTCCTCGTCGCCTCTTGCTTCCGTCTTCTTCCACCTTCTCAA
CCTTGCCTGAAATTGCCACACCCACCTGTGGCCTGGACGCGACGCAACTC
GAGTATTTTTCGCTAGCGCACTCGTTTGCCAAGAACGAGTTGACCCCGGC
CCTGGCCTCGGAATGGGACAGCAAGGAAATTTTTCCTGTGGAAACCATGC
AGAAAGCGGCCGAATTAGGATTTGGGGCGGTGTTTGTGAGGGAGGACGTG
GGGGGGAGTGGCATGTCACGGTTGGAAGGGTCAATCGTGTTTGAGGCCTT
GGCTGCAGGATGCACCAGCACAGCGGCGTATTTGACGATTCACTCTATGT
GTGGGTGGATGCTGGACACGCTCGGTACGGAGGAGCAACGCCTGAAGTGG
TTGCCCAAGATGGCGACGATGGAGTTTTTTTCTTCGTATTGTTTGACGGA
ACCCAATAGTGGCAGTGATGCCGGCTCCCTCTCTACCAAGGCAGTGCGGG
ACGGCGATTCCTACATTATAAACGGCAGCAAGGCCTTTATCAGTGGCGCA
GGGGTAAGTGACCTGTACTTGGTAATGTGTCGAACAGGGGGGAAGGGCCC
TGGTGGCATCTCATGCGTGGTGGTGGAGAAAGGAACGCCGGGTTTGTCTT
TTGGGGTACCAGAAAAAAAGATGGGATGGAAGTCGCAGCCGACAGCGACA
GTGAGTTTTGAGGATGTCCGGGTGCCGATAGGTAATTTGGTGGGGAAGGA
GGGAGAGGGTTTTAAATATGCGATGAGAGGGTTGGATGGGGGGAGAATTA
ACATTGCAACTTGTAGTGTGGGGGCGGCGCAGGCGTGTTTGGAGAGGACG
CGGGCGTACATCACGGAAAGGAAGCAGTTTGGGAGGGCTGTGGGTGATAA
TCAGTATGTGCAGTTTAAATTTGCAGACATGGCGACTGCATTGGTGGGGG
CGCGCTTGATGGTTAGGGAGGCGGCGAGAATGCTTGATCGAAAGGACCCG
GAGGCGAGTGCCATGTGCGCGATGGCAAAGAGGGTGGCGACGGACGTGGC
GTTCAACGTATGTAATGACGCTGTTCAGTTGCATGGGGGCTATGGGTATT
TGAAGGATTATCACGTGGAGAGGTACTTGAGAGACGTGAGGGTGCATCAG
ATCTTGGAGGGGACGAATGAGATAATGAGGGTGATTGTGGCGAGGAAGCT
GTTGCAGGGAGAGTAG

Synonyms

Publications