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Properties
| Property Name | Value |
|---|
| TranscriptId | 550646 |
| Track | FilteredModels2 |
| ProteinId | 550560 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1349694..1351833 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1148 ID=mRNA_1148|Name=jgi.p|Nanoce1779_2|550560|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
ACAGGTCAATATCTCCTCCCTCTGTTAGGGTTAGGGTTAGGGTTAGACGG
TTCGAAGCTCCGCGGCATACTGCTACAGGCATAACAAGGGCTACCAAAAG
CATCCTTGTTTCAAATTGTCGCCGGTCGCTCAAAATTCGAACACCCCGCT
CACACACAGCGAGGCAGCCGTGCATGCTCACGCGTCCCTTCCGTGCTGCT
TTTATATTGCCCATCTTGTCGTCGTGCGCGCCTACCCGTAGCTCCGCAAT
AACCTCCATACGCTCCATCCTCACAACCGGCACGACTTTTAAAAGAATGC
CTCCCGCCAACCCCAGAATCATCGCTCTTTTCGACGTGGATGGCACGCTC
ACCCCCGCCCGCAAAGACATAACCCCCGAAACCGCCGCATTCATCAAGAA
ACTCCGGGAGAAAATCACCATTGGGGTGGTGGGCGGCTCAGATTTCCCCA
AGCAAAAAGAACAACTCGGCGAGACCGTCCTTGAAGACTTCGATTACTCC
TTCTCCGAGAATGGGTTGGTCGCCTACCACAAGGGTAAGCAGATCGGCCA
TACCTCCATCAATGACCACTTGGGGGAAGAAAACATCAAGGCGATTGTGA
ACTGGACGCTGCGATACCTCTCGGATCTGGACATTCCCATCAAGCGCGGA
ACATTCATTGAGTACCGGACAGGGATGCTCAATATCTCCCCCATTGGCCG
TAACTGCAACAGAGAGGAGCGCAATGCCTTCGAGGTGATGGACCTAGAGA
ATGGTGTCCGCAAGACAATGGTGGAGAAGATGCGCAAGAAGTTTGCTAAT
TTAGACCTGACCTTTTCGATCGGGGGCCAGATCTCTTTTGATTTGTTTCC
CAAGGGCTGGGATAAAACGTATTGCCTCAGGTATCTCGCGGAAGGCGATT
TTGACGAGGTGCATTTCTTTGGAGACAAGACGTTCGAGGGCGGGAACGAC
CACGAGATTTTTGTGCACCCGCGCGTGATTGGCCACACGGTGACATGCCC
GGAGGACACGGTGAAGCAATTGAGGGAGTTGTTTTTTAGGTGAAGATAAA
AAGAGGAAGGAGGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAGGAAGGG
GTCATCGCAGGAAGACGAAATATTCCATCGGGGCGAAGGAGGCGGAGAAG
GGGAAGGAGAGGAAAAAGAAACAGAATGGTAGCAATCACGACAGAATCAA
AATGAGAAGGGGATAAAGCGTTAAATACCGAATATCGAATTGCGCTGTAA
A back to topprotein sequence of jgi.p|Nanoce1779_2|550560 >mRNA_1148-protein ID=mRNA_1148-protein|Name=jgi.p|Nanoce1779_2|550560|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MLTRPFRAAFILPILSSCAPTRSSAITSIRSILTTGTTFKRMPPANPRII
ALFDVDGTLTPARKDITPETAAFIKKLREKITIGVVGGSDFPKQKEQLGE
TVLEDFDYSFSENGLVAYHKGKQIGHTSINDHLGEENIKAIVNWTLRYLS
DLDIPIKRGTFIEYRTGMLNISPIGRNCNREERNAFEVMDLENGVRKTMV
EKMRKKFANLDLTFSIGGQISFDLFPKGWDKTYCLRYLAEGDFDEVHFFG
DKTFEGGNDHEIFVHPRVIGHTVTCPEDTVKQLRELFFR* back to topmRNA from alignment at scaffold_2:1349694..1351833- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1148 ID=mRNA_1148|Name=jgi.p|Nanoce1779_2|550560|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at scaffold_2:1349694..1351833- (Nannochloropsis oceanica)
ACAGGTCAATATCTCCTCCCTCTGTTAGGGTTAGGGTTAGGGTTAGACGG
TTCGAAGCTCCGCGGCATACTGCTACAGGCATAACAAGGGCTACCAAAAG
CATCCTTGTTTCAAATTGTCGCCGGTCGCTCAAAATTCGAACACCCCGCT
CACACACAGCGAGGCAGCCGTGCATGCTCACGCGTCCCTTCCGTGCTGCT
TTTATATTGCCCATCTTGTCGTCGTGCGCGCCTACCCGTAGCTCCGCAAT
AACCTCCATACGGTAAGACAACACCAATGATTGGCCGTTCCCCCCTTCCA
GCGCCTACCCTTCTTCGTAGTCCCTACGTGCGCTCTATCATCCAATCGCG
CAATGGCCATCCTCGGTCAAAAGCTCCGTCCTTTGTATGCACTTAGCCAG
CAAGCATCCCTCTACATCGATCGAAACCAAACGTAACACTCCCTTCCTCA
TCCCTCACCCTCCCTCCTCCCTCCTACCCCTCCCCTCTGTCTAGCTCCAT
CCTCACAACCGGCACGACTTTTAAAAGAATGCCTCCCGCCAACCCCAGAA
TCATCGCTCTTTTCGACGTGGATGGCACGCTCACCCCCGCCCGCAAAGAC
ATAACCCCCGAAACCGCCGCATTCATCAAGAAACTCCGGGAGAAAATCAC
CATTGGGGTGGTGGGCGGCTCAGATTTCCCCAAGCAAAAAGAACAACTCG
GCGAGACCGTCCTTGAAGACTTCGATTACTCCTTCTCCGAGAATGGGTTG
GTCGCCTACCACAAGGGTAAGCAGATCGGCCATACCTCCATCAATGACCA
CTTGGGGGAAGAAAACATCAAGGCGATTGTGAACTGGACGCTGCGATACC
TCTCGGGTAAGTGAAGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGG
AAGAGGACAGGAAAGTATGGAATTCAAATTGTGAGTATGATCTGCCTTAT
GGTAGACGATTCATGTATAAATTGCATACCAACTGTCTCCTGCAGCCTGG
AAGATTCAAGATTCACGAGCACTCGATTCCCCTCCCTCTTTCCCTCCTTC
TTCCCTCCATTCATTCCTTTCCTTCCCCTCACTTCCTCCCCGCCCTCCTT
TCCCTCCCAACACCAAGATCTGGACATTCCCATCAAGCGCGGAACATTCA
TTGAGTACCGGACAGGGATGCTCAATATCTCCCCCATTGGCCGTAACTGC
AACAGAGAGGAGCGCAATGCCTTCGAGGTGAAGAGGAGGGAGGAAGGGGG
GGAGGAAGGGGTGGGGCACGCTGGTACACCGCTTCTATTCGACTGACTCT
TTTCCTCCCTTCCTCTCTCCTTCCCTCCCTCGCTCCCTTCCTTTCTCCTT
CCTTCCCCCTCTTCTTCTCCTCTCCAGGTGATGGACCTAGAGAATGGTGT
CCGCAAGACAATGGTGGAGAAGATGCGCAAGAAGTTTGCTAATTTAGACC
TGACCTTTTCGATCGGGGGCCAGATCTCTTTTGATTTGTTTCCCAAGGGC
TGGGATAAAACGTATTGCCTCAGGTTCGGAGGAGCGGGGCTGGGGAGGGA
AGGAGGGAAGGAGGGATTGTTGGCTGGCTGAGGTAGACTTGGGGTCTTCG
ATTGGCGGGCCTATTTCATTAGATAAGGTTAGGTTAGGTTAGATTCAGAT
TAAATAAGATCAGATTAGATTTAATTCGATTGGATTCGATTCGATTCGAT
TTGACCAGAGTATTTGCATAATATTACGACATCCTTCATCGACCTCTTCC
TCTTTCCTCCCTTGTTAAGGTATCTCGCGGAAGGCGATTTTGACGAGGTG
CATTTCTTTGGAGACAAGACGTTCGAGGGCGGGAACGACCACGAGATTTT
TGTGCACCCGCGCGTGATTGGCCACACGGTGACATGCCCGGAGGACACGG
TGAAGCAATTGAGGGAGTTGTTTTTTAGGTGAAGATAAAAAGAGGAAGGA
GGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAGGAAGGGGTCATCGCAGG
AAGACGAAATATTCCATCGGGGCGAAGGAGGCGGAGAAGGGGAAGGAGAG
GAAAAAGAAACAGAATGGTAGCAATCACGACAGAATCAAAATGAGAAGGG
GATAAAGCGTTAAATACCGAATATCGAATTGCGCTGTAAA back to topCoding sequence (CDS) from alignment at scaffold_2:1349694..1351833- >mRNA_1148 ID=mRNA_1148|Name=jgi.p|Nanoce1779_2|550560|organism=Nannochloropsis oceanica|type=CDS|length=4350bp|location=Sequence derived from alignment at scaffold_2:1349694..1351833- (Nannochloropsis oceanica)
GTATCTCGCGGAAGGCGATTTTGACGAGGTGCATTTCTTTGGAGACAAGA
CGTTCGAGGGCGGGAACGACCACGAGATTTTTGTGCACCCGCGCGTGATT
GGCCACACGGTGACATGCCCGGAGGACACGGTGAAGCAATTGAGGGAGTT
GTTTTTTAGGTGAGTGATGGACCTAGAGAATGGTGTCCGCAAGACAATGG
TGGAGAAGATGCGCAAGAAGTTTGCTAATTTAGACCTGACCTTTTCGATC
GGGGGCCAGATCTCTTTTGATTTGTTTCCCAAGGGCTGGGATAAAACGTA
TTGCCTCAGATCTGGACATTCCCATCAAGCGCGGAACATTCATTGAGTAC
CGGACAGGGATGCTCAATATCTCCCCCATTGGCCGTAACTGCAACAGAGA
GGAGCGCAATGCCTTCGAGCTCCATCCTCACAACCGGCACGACTTTTAAA
AGAATGCCTCCCGCCAACCCCAGAATCATCGCTCTTTTCGACGTGGATGG
CACGCTCACCCCCGCCCGCAAAGACATAACCCCCGAAACCGCCGCATTCA
TCAAGAAACTCCGGGAGAAAATCACCATTGGGGTGGTGGGCGGCTCAGAT
TTCCCCAAGCAAAAAGAACAACTCGGCGAGACCGTCCTTGAAGACTTCGA
TTACTCCTTCTCCGAGAATGGGTTGGTCGCCTACCACAAGGGTAAGCAGA
TCGGCCATACCTCCATCAATGACCACTTGGGGGAAGAAAACATCAAGGCG
ATTGTGAACTGGACGCTGCGATACCTCTCGGATGCTCACGCGTCCCTTCC
GTGCTGCTTTTATATTGCCCATCTTGTCGTCGTGCGCGCCTACCCGTAGC
TCCGCAATAACCTCCATACGGTATCTCGCGGAAGGCGATTTTGACGAGGT
GCATTTCTTTGGAGACAAGACGTTCGAGGGCGGGAACGACCACGAGATTT
TTGTGCACCCGCGCGTGATTGGCCACACGGTGACATGCCCGGAGGACACG
GTGAAGCAATTGAGGGAGTTGTTTTTTAGGTGAGTGATGGACCTAGAGAA
TGGTGTCCGCAAGACAATGGTGGAGAAGATGCGCAAGAAGTTTGCTAATT
TAGACCTGACCTTTTCGATCGGGGGCCAGATCTCTTTTGATTTGTTTCCC
AAGGGCTGGGATAAAACGTATTGCCTCAGATCTGGACATTCCCATCAAGC
GCGGAACATTCATTGAGTACCGGACAGGGATGCTCAATATCTCCCCCATT
GGCCGTAACTGCAACAGAGAGGAGCGCAATGCCTTCGAGCTCCATCCTCA
CAACCGGCACGACTTTTAAAAGAATGCCTCCCGCCAACCCCAGAATCATC
GCTCTTTTCGACGTGGATGGCACGCTCACCCCCGCCCGCAAAGACATAAC
CCCCGAAACCGCCGCATTCATCAAGAAACTCCGGGAGAAAATCACCATTG
GGGTGGTGGGCGGCTCAGATTTCCCCAAGCAAAAAGAACAACTCGGCGAG
ACCGTCCTTGAAGACTTCGATTACTCCTTCTCCGAGAATGGGTTGGTCGC
CTACCACAAGGGTAAGCAGATCGGCCATACCTCCATCAATGACCACTTGG
GGGAAGAAAACATCAAGGCGATTGTGAACTGGACGCTGCGATACCTCTCG
GATGCTCACGCGTCCCTTCCGTGCTGCTTTTATATTGCCCATCTTGTCGT
CGTGCGCGCCTACCCGTAGCTCCGCAATAACCTCCATACGGTATCTCGCG
GAAGGCGATTTTGACGAGGTGCATTTCTTTGGAGACAAGACGTTCGAGGG
CGGGAACGACCACGAGATTTTTGTGCACCCGCGCGTGATTGGCCACACGG
TGACATGCCCGGAGGACACGGTGAAGCAATTGAGGGAGTTGTTTTTTAGG
TGAGTGATGGACCTAGAGAATGGTGTCCGCAAGACAATGGTGGAGAAGAT
GCGCAAGAAGTTTGCTAATTTAGACCTGACCTTTTCGATCGGGGGCCAGA
TCTCTTTTGATTTGTTTCCCAAGGGCTGGGATAAAACGTATTGCCTCAGA
TCTGGACATTCCCATCAAGCGCGGAACATTCATTGAGTACCGGACAGGGA
TGCTCAATATCTCCCCCATTGGCCGTAACTGCAACAGAGAGGAGCGCAAT
GCCTTCGAGCTCCATCCTCACAACCGGCACGACTTTTAAAAGAATGCCTC
CCGCCAACCCCAGAATCATCGCTCTTTTCGACGTGGATGGCACGCTCACC
CCCGCCCGCAAAGACATAACCCCCGAAACCGCCGCATTCATCAAGAAACT
CCGGGAGAAAATCACCATTGGGGTGGTGGGCGGCTCAGATTTCCCCAAGC
AAAAAGAACAACTCGGCGAGACCGTCCTTGAAGACTTCGATTACTCCTTC
TCCGAGAATGGGTTGGTCGCCTACCACAAGGGTAAGCAGATCGGCCATAC
CTCCATCAATGACCACTTGGGGGAAGAAAACATCAAGGCGATTGTGAACT
GGACGCTGCGATACCTCTCGGATGCTCACGCGTCCCTTCCGTGCTGCTTT
TATATTGCCCATCTTGTCGTCGTGCGCGCCTACCCGTAGCTCCGCAATAA
CCTCCATACGGTATCTCGCGGAAGGCGATTTTGACGAGGTGCATTTCTTT
GGAGACAAGACGTTCGAGGGCGGGAACGACCACGAGATTTTTGTGCACCC
GCGCGTGATTGGCCACACGGTGACATGCCCGGAGGACACGGTGAAGCAAT
TGAGGGAGTTGTTTTTTAGGTGAGTGATGGACCTAGAGAATGGTGTCCGC
AAGACAATGGTGGAGAAGATGCGCAAGAAGTTTGCTAATTTAGACCTGAC
CTTTTCGATCGGGGGCCAGATCTCTTTTGATTTGTTTCCCAAGGGCTGGG
ATAAAACGTATTGCCTCAGATCTGGACATTCCCATCAAGCGCGGAACATT
CATTGAGTACCGGACAGGGATGCTCAATATCTCCCCCATTGGCCGTAACT
GCAACAGAGAGGAGCGCAATGCCTTCGAGCTCCATCCTCACAACCGGCAC
GACTTTTAAAAGAATGCCTCCCGCCAACCCCAGAATCATCGCTCTTTTCG
ACGTGGATGGCACGCTCACCCCCGCCCGCAAAGACATAACCCCCGAAACC
GCCGCATTCATCAAGAAACTCCGGGAGAAAATCACCATTGGGGTGGTGGG
CGGCTCAGATTTCCCCAAGCAAAAAGAACAACTCGGCGAGACCGTCCTTG
AAGACTTCGATTACTCCTTCTCCGAGAATGGGTTGGTCGCCTACCACAAG
GGTAAGCAGATCGGCCATACCTCCATCAATGACCACTTGGGGGAAGAAAA
CATCAAGGCGATTGTGAACTGGACGCTGCGATACCTCTCGGATGCTCACG
CGTCCCTTCCGTGCTGCTTTTATATTGCCCATCTTGTCGTCGTGCGCGCC
TACCCGTAGCTCCGCAATAACCTCCATACGGTATCTCGCGGAAGGCGATT
TTGACGAGGTGCATTTCTTTGGAGACAAGACGTTCGAGGGCGGGAACGAC
CACGAGATTTTTGTGCACCCGCGCGTGATTGGCCACACGGTGACATGCCC
GGAGGACACGGTGAAGCAATTGAGGGAGTTGTTTTTTAGGTGAGTGATGG
ACCTAGAGAATGGTGTCCGCAAGACAATGGTGGAGAAGATGCGCAAGAAG
TTTGCTAATTTAGACCTGACCTTTTCGATCGGGGGCCAGATCTCTTTTGA
TTTGTTTCCCAAGGGCTGGGATAAAACGTATTGCCTCAGATCTGGACATT
CCCATCAAGCGCGGAACATTCATTGAGTACCGGACAGGGATGCTCAATAT
CTCCCCCATTGGCCGTAACTGCAACAGAGAGGAGCGCAATGCCTTCGAGC
TCCATCCTCACAACCGGCACGACTTTTAAAAGAATGCCTCCCGCCAACCC
CAGAATCATCGCTCTTTTCGACGTGGATGGCACGCTCACCCCCGCCCGCA
AAGACATAACCCCCGAAACCGCCGCATTCATCAAGAAACTCCGGGAGAAA
ATCACCATTGGGGTGGTGGGCGGCTCAGATTTCCCCAAGCAAAAAGAACA
ACTCGGCGAGACCGTCCTTGAAGACTTCGATTACTCCTTCTCCGAGAATG
GGTTGGTCGCCTACCACAAGGGTAAGCAGATCGGCCATACCTCCATCAAT
GACCACTTGGGGGAAGAAAACATCAAGGCGATTGTGAACTGGACGCTGCG
ATACCTCTCGGATGCTCACGCGTCCCTTCCGTGCTGCTTTTATATTGCCC
ATCTTGTCGTCGTGCGCGCCTACCCGTAGCTCCGCAATAACCTCCATACG back to top
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