jgi.p|Nanoce1779_2|668081, mRNA_1146 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668081
Unique NamemRNA_1146
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2386
Alignment locationscaffold_2:1344201..1346586 -

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Properties
Property NameValue
TranscriptId668167
TrackFilteredModels2
ProteinId668081
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1344201..1346586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668081gene_1146Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668081mRNA_1146-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1146CDS_1146Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Nanoce1779_2|668081|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp
CAACAGACACGCCTATCACGCCACAGTACCACGGTTACCAAACAGGCCAG
CAAGGCGGTCACGTATCGCTGGCGCTCGCCCAAAACGCGAGCCGTTGCCG
CTCTCTCAGCTACCCGCCCTCCTGCCCTCACGTCCCCACGGACCCGATTC
ATCAAGCAGAAGCATGCCTAGCACAAGCTACCCATATGCCGCAATTTTGG
TCTCCCTCTTCTTCGGTACTACGGCCATCAAGCTCCTCCTTCACCCTTCC
TACCTTTCCACCGACTTCGAAGTCCATCGGAACTGGCTAGCCCTAACCCA
CTCCTTGCCCCTTAGGGAATGGTACTTTGAGCATACGTCGGAATGGACAT
TGGATTACCCACCTTTCTTCGCATATTTTGAGTGGTGGCTCTCACAAGTC
GCAGCCTTCTTAAACTGGGACCCCAAAATGCTCGAAATTTCGGCCACCCC
CTACGTGAGCGAAGCTACCATCCTCTTTCAGCGTCTCTCCGTCATGGTCA
CGGACGTCGTGTTGCTTGCCGGCCTTGCCTTGTGGGTACACAGTATTCGG
CCTAAGATACGCACGCCTCAACGGGTGGTAGCGCTTGGCTTGGTGGTTCT
GGGAAGCGTGGGGCTGCTGATGGTGGACCACATGCATTTCCAATACAACG
GCATGATGATCGGCCTACTGTTCCTCTCCATTGCGGCCCTTCGACACGGA
TGGGTCTTGACAGGGGCAGCATTATTCGCAGCCCTCCTCATGTTTAAGCA
TTTGTTTCTTTCGCTCGCCCCAGCCTACTTTGTGTATCTCCTGTCCTCTT
ACTGCTTCGTTCGTACCAGCACTAGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGCCACCACCACCACAACTACAAAGAGTTATTTCTCTCTCCTCCG
CTTCTTGATCCTCGGCCTAACTGTGCTCTTCATCTTCTCTTTCGCCCTTG
GGCCCCTCGGTCCGTTTTCCTTCCCCTTGCCCTCCTCCTCCTTCTCCTCT
TCCTCCTCCTCCCTCCTCCCAACCTCCTACCTCCAGCAGCTCGCCAGCCG
CCTCTTCCCCTTCGGCCGTGGCCTCACCCATGCCTATTGGGCACCCAACG
TATGGGCCCTCTATTGCTGCAAAGACCTCGCCCTCGCCTCCCTCTCCCGG
CGCCTCAACCTCCCCCTCCACGACCCCGCCCGCCCTCCCTCCCTCCCGTC
CTGGACCAGTGGGCTCGTGCAAGTGATCGAGCCAGAGATATTATTCCAAG
TGTCGCCGTCAATGACAGCGTGCCTTGTGCTGGTGAGCATATGCCCGGCC
TTGTGGCAGTTGTGGCGAAAGCCGACGGAGAGGACATTTTTGGTGGTCCT
TTTTCAGACGAGTTTGTGCGGGTTTATGCTTGGATGGCATGTCCATGAGA
AAGCCGTGCTTGTCCCCGTACTCTTGTCGGGGGTGTTGGCTTTGTCCTAT
CAAGACCGACGGTATGGGAGGATGTTTTATTATTTGTCGTGCATAGGGCA
TGCGTCGTTGTTGCCTTTGTTCCCGCCTTTGACTGCGGATGCACTGACGG
CCTTTATGCTGATTCAGGTGCATGTTGTGGGGGCGTGGGTATTGCTTGAG
GGGGAGGGATTGGTTGGGGGAAGGAGGGAGGGAGGGTGGGTGGAGGGGGC
GTATCTGGTCGGGGTGGAGGCCATGCTGTGGATGGTGGCGGTGGGGCATC
CGTTGGTGGGAGCGGAGAGGTTTCCGTTTGGCGCGAGACTGTTGTCGAGT
GTATATTGCGGGGTGGGGATGGTTGGGGTGTGGCTGTGGTCGTTCCGCCT
GTTGGTCGTGGAGGGGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAGG
AGGAGGAAGGCGAGGGGAGGGGACTGACAGGAAGGAGGAGGGGTGATATG
CGCCTGAGGAAATCAGACTGATTCACAATGAGGAAATGATTTGAGCGATT
GATAAAATGAAGCACAACAGAGATACCTGGCTGTGGAAACCCAAAGAGGC
CGAGTCGGAATCGTGCGGATTCTTCATAGATTTTCTTCTTTACGTCTCGA
TCCTTGAGTCGGTCGGTGTCGCCAATGGTGAGAGGGGACGAGGAAGGGAA
GGACTTGAAAAGAAAGAAGGGGAAGGAGAAGGGGGAGGGGAGGGGGGGGG
TGTAAACCAAACCGAAACTACACTGTCACCTACTGAGGGCGGGAAGGAGG
TAATGAGATCCCTTTCTTCTGTTTTTGTTGTCTACTTTTTTAGGGCTTCT
TATCTCTTTCCTCTCTCTGGTCTCTCTTCTCCATCTCTTGTGCGTCCTAA
TCATCACACCGGCAGGGAGTGATCTTCACTTTTCCATGCATTCCTTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|668081

>mRNA_1146-protein ID=mRNA_1146-protein|Name=jgi.p|Nanoce1779_2|668081|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MPSTSYPYAAILVSLFFGTTAIKLLLHPSYLSTDFEVHRNWLALTHSLPL
REWYFEHTSEWTLDYPPFFAYFEWWLSQVAAFLNWDPKMLEISATPYVSE
ATILFQRLSVMVTDVVLLAGLALWVHSIRPKIRTPQRVVALGLVVLGSVG
LLMVDHMHFQYNGMMIGLLFLSIAALRHGWVLTGAALFAALLMFKHLFLS
LAPAYFVYLLSSYCFVRTSTSSSSSSSSSSSATTTTTTKSYFSLLRFLIL
GLTVLFIFSFALGPLGPFSFPLPSSSFSSSSSSLLPTSYLQQLASRLFPF
GRGLTHAYWAPNVWALYCCKDLALASLSRRLNLPLHDPARPPSLPSWTSG
LVQVIEPEILFQVSPSMTACLVLVSICPALWQLWRKPTERTFLVVLFQTS
LCGFMLGWHVHEKAVLVPVLLSGVLALSYQDRRYGRMFYYLSCIGHASLL
PLFPPLTADALTAFMLIQVHVVGAWVLLEGEGLVGGRREGGWVEGAYLVG
VEAMLWMVAVGHPLVGAERFPFGARLLSSVYCGVGMVGVWLWSFRLLVVE
GEGEEEGEEEEEEEEGEGRGLTGRRRGDMRLRKSD*
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mRNA from alignment at scaffold_2:1344201..1346586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Nanoce1779_2|668081|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp|location=Sequence derived from alignment at scaffold_2:1344201..1346586- (Nannochloropsis oceanica)
CAACAGACACGCCTATCACGCCACAGTACCACGGTTACCAAACAGGCCAG
CAAGGCGGTCACGTATCGCTGGCGCTCGCCCAAAACGCGAGCCGTTGCCG
CTCTCTCAGCTACCCGCCCTCCTGCCCTCACGTCCCCACGGACCCGATTC
ATCAAGCAGAAGCATGCCTAGCACAAGCTACCCATATGCCGCAATTTTGG
TCTCCCTCTTCTTCGGTACTACGGCCATCAAGCTCCTCCTTCACCCTTCC
TACCTTTCCACCGACTTCGAAGTCCATCGGAACTGGCTAGCCCTAACCCA
CTCCTTGCCCCTTAGGGAATGGTACTTTGAGCATACGTCGGAATGGACAT
TGGATTACCCACCTTTCTTCGCATATTTTGAGTGGTGGCTCTCACAAGTC
GCAGCCTTCTTAAACTGGGACCCCAAAATGCTCGAAATTTCGGCCACCCC
CTACGTGAGCGAAGCTACCATCCTCTTTCAGCGTCTCTCCGTCATGGTCA
CGGACGTCGTGTTGCTTGCCGGCCTTGCCTTGTGGGTACACAGTATTCGG
CCTAAGATACGCACGCCTCAACGGGTGGTAGCGCTTGGCTTGGTGGTTCT
GGGAAGCGTGGGGCTGCTGATGGTGGACCACATGCATTTCCAATACAACG
GCATGATGATCGGCCTACTGTTCCTCTCCATTGCGGCCCTTCGACACGGA
TGGGTCTTGACAGGGGCAGCATTATTCGCAGCCCTCCTCATGTTTAAGCA
TTTGTTTCTTTCGCTCGCCCCAGCCTACTTTGTGTATCTCCTGTCCTCTT
ACTGCTTCGTTCGTACCAGCACTAGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGCCACCACCACCACAACTACAAAGAGTTATTTCTCTCTCCTCCG
CTTCTTGATCCTCGGCCTAACTGTGCTCTTCATCTTCTCTTTCGCCCTTG
GGCCCCTCGGTCCGTTTTCCTTCCCCTTGCCCTCCTCCTCCTTCTCCTCT
TCCTCCTCCTCCCTCCTCCCAACCTCCTACCTCCAGCAGCTCGCCAGCCG
CCTCTTCCCCTTCGGCCGTGGCCTCACCCATGCCTATTGGGCACCCAACG
TATGGGCCCTCTATTGCTGCAAAGACCTCGCCCTCGCCTCCCTCTCCCGG
CGCCTCAACCTCCCCCTCCACGACCCCGCCCGCCCTCCCTCCCTCCCGTC
CTGGACCAGTGGGCTCGTGCAAGTGATCGAGCCAGAGATATTATTCCAAG
TGTCGCCGTCAATGACAGCGTGCCTTGTGCTGGTGAGCATATGCCCGGCC
TTGTGGCAGTTGTGGCGAAAGCCGACGGAGAGGACATTTTTGGTGGTCCT
TTTTCAGACGAGTTTGTGCGGGTTTATGCTTGGATGGCATGTCCATGAGA
AAGCCGTGCTTGTCCCCGTACTCTTGTCGGGGGTGTTGGCTTTGTCCTAT
CAAGACCGACGGTATGGGAGGATGTTTTATTATTTGTCGTGCATAGGGCA
TGCGTCGTTGTTGCCTTTGTTCCCGCCTTTGACTGCGGATGCACTGACGG
CCTTTATGCTGATTCAGGTGCATGTTGTGGGGGCGTGGGTATTGCTTGAG
GGGGAGGGATTGGTTGGGGGAAGGAGGGAGGGAGGGTGGGTGGAGGGGGC
GTATCTGGTCGGGGTGGAGGCCATGCTGTGGATGGTGGCGGTGGGGCATC
CGTTGGTGGGAGCGGAGAGGTTTCCGTTTGGCGCGAGACTGTTGTCGAGT
GTATATTGCGGGGTGGGGATGGTTGGGGTGTGGCTGTGGTCGTTCCGCCT
GTTGGTCGTGGAGGGGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAGG
AGGAGGAAGGCGAGGGGAGGGGACTGACAGGAAGGAGGAGGGGTGATATG
CGCCTGAGGAAATCAGACTGATTCACAATGAGGAAATGATTTGAGCGATT
GATAAAATGAAGCACAACAGAGATACCTGGCTGTGGAAACCCAAAGAGGC
CGAGTCGGAATCGTGCGGATTCTTCATAGATTTTCTTCTTTACGTCTCGA
TCCTTGAGTCGGTCGGTGTCGCCAATGGTGAGAGGGGACGAGGAAGGGAA
GGACTTGAAAAGAAAGAAGGGGAAGGAGAAGGGGGAGGGGAGGGGGGGGG
TGTAAACCAAACCGAAACTACACTGTCACCTACTGAGGGCGGGAAGGAGG
TAATGAGATCCCTTTCTTCTGTTTTTGTTGTCTACTTTTTTAGGGCTTCT
TATCTCTTTCCTCTCTCTGGTCTCTCTTCTCCATCTCTTGTGCGTCCTAA
TCATCACACCGGCAGGGAGTGATCTTCACTTTTCCATGCATTCCTTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_2:1344201..1346586-

>mRNA_1146 ID=mRNA_1146|Name=jgi.p|Nanoce1779_2|668081|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_2:1344201..1346586- (Nannochloropsis oceanica)
ATGCCTAGCACAAGCTACCCATATGCCGCAATTTTGGTCTCCCTCTTCTT
CGGTACTACGGCCATCAAGCTCCTCCTTCACCCTTCCTACCTTTCCACCG
ACTTCGAAGTCCATCGGAACTGGCTAGCCCTAACCCACTCCTTGCCCCTT
AGGGAATGGTACTTTGAGCATACGTCGGAATGGACATTGGATTACCCACC
TTTCTTCGCATATTTTGAGTGGTGGCTCTCACAAGTCGCAGCCTTCTTAA
ACTGGGACCCCAAAATGCTCGAAATTTCGGCCACCCCCTACGTGAGCGAA
GCTACCATCCTCTTTCAGCGTCTCTCCGTCATGGTCACGGACGTCGTGTT
GCTTGCCGGCCTTGCCTTGTGGGTACACAGTATTCGGCCTAAGATACGCA
CGCCTCAACGGGTGGTAGCGCTTGGCTTGGTGGTTCTGGGAAGCGTGGGG
CTGCTGATGGTGGACCACATGCATTTCCAATACAACGGCATGATGATCGG
CCTACTGTTCCTCTCCATTGCGGCCCTTCGACACGGATGGGTCTTGACAG
GGGCAGCATTATTCGCAGCCCTCCTCATGTTTAAGCATTTGTTTCTTTCG
CTCGCCCCAGCCTACTTTGTGTATCTCCTGTCCTCTTACTGCTTCGTTCG
TACCAGCACTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCACCA
CCACCACAACTACAAAGAGTTATTTCTCTCTCCTCCGCTTCTTGATCCTC
GGCCTAACTGTGCTCTTCATCTTCTCTTTCGCCCTTGGGCCCCTCGGTCC
GTTTTCCTTCCCCTTGCCCTCCTCCTCCTTCTCCTCTTCCTCCTCCTCCC
TCCTCCCAACCTCCTACCTCCAGCAGCTCGCCAGCCGCCTCTTCCCCTTC
GGCCGTGGCCTCACCCATGCCTATTGGGCACCCAACGTATGGGCCCTCTA
TTGCTGCAAAGACCTCGCCCTCGCCTCCCTCTCCCGGCGCCTCAACCTCC
CCCTCCACGACCCCGCCCGCCCTCCCTCCCTCCCGTCCTGGACCAGTGGG
CTCGTGCAAGTGATCGAGCCAGAGATATTATTCCAAGTGTCGCCGTCAAT
GACAGCGTGCCTTGTGCTGGTGAGCATATGCCCGGCCTTGTGGCAGTTGT
GGCGAAAGCCGACGGAGAGGACATTTTTGGTGGTCCTTTTTCAGACGAGT
TTGTGCGGGTTTATGCTTGGATGGCATGTCCATGAGAAAGCCGTGCTTGT
CCCCGTACTCTTGTCGGGGGTGTTGGCTTTGTCCTATCAAGACCGACGGT
ATGGGAGGATGTTTTATTATTTGTCGTGCATAGGGCATGCGTCGTTGTTG
CCTTTGTTCCCGCCTTTGACTGCGGATGCACTGACGGCCTTTATGCTGAT
TCAGGTGCATGTTGTGGGGGCGTGGGTATTGCTTGAGGGGGAGGGATTGG
TTGGGGGAAGGAGGGAGGGAGGGTGGGTGGAGGGGGCGTATCTGGTCGGG
GTGGAGGCCATGCTGTGGATGGTGGCGGTGGGGCATCCGTTGGTGGGAGC
GGAGAGGTTTCCGTTTGGCGCGAGACTGTTGTCGAGTGTATATTGCGGGG
TGGGGATGGTTGGGGTGTGGCTGTGGTCGTTCCGCCTGTTGGTCGTGGAG
GGGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAAGGCGA
GGGGAGGGGACTGACAGGAAGGAGGAGGGGTGATATGCGCCTGAGGAAAT
CAGACTGA
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Synonyms
Publications