jgi.p|Nanoce1779_2|575510, mRNA_1144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575510
Unique NamemRNA_1144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length982
Alignment locationscaffold_2:1340482..1341616 +

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Properties
Property NameValue
TranscriptId575596
TrackFilteredModels2
ProteinId575510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1340482..1341616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575510gene_1144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575510mRNA_1144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1144CDS_1144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1144 ID=mRNA_1144|Name=jgi.p|Nanoce1779_2|575510|organism=Nannochloropsis oceanica|type=mRNA|length=982bp
CCCTGGGGGAGGGTCGTCAAGGGGGAGGGGGGAGGAGGAGGAGGAGGGGA
AGGAGGAGGCGGAGACAAGGGATGGATCAAGGAGGGGGAGGGAGGGAGGG
CAGATGGGGGGGGAGGAGGGGTCTTCCTGTTGCTGGAGCTGATAGGGTGG
TCGGGGCGGGGGAGGAGGCATGGAGGAGGAGGGGCGCGAGGAGGTGAGGG
AGGAGGGGACAGGGTGTGGTAGAACGGCAGCACCTACAGCAGCAGAAGCA
GCTGCCGCAGCAGCAATTAGAGTGCCATCGTATACGGGCTCCGTCGATGA
TGGCAAGGTAGAGGAAAGAGTGGGCGGTGGTGGCGCCGAGGGTGTGAATG
CAGACACTGCTTGTTTGACGCCGTGGCTGGCATGGCTCACGCCGGAGAAC
TCACCGGGACGGTCTGCCTCATCTCCTCCGCCATGGCTGCTGCCACCATT
TCCGCCGTTTCTGTCATGGTTATTGCTGCTGTCGACAAGGAAAGGTTTGA
GTGCTGAGGTCGGAAACAAAGGTTGCGTGGGAGCGTTCCCGTTGCCGTTG
CTGATGTTGTTGCTGCTGCTACTGGTGGCTTGGGGGAAAGGCCCTTCCTC
AAACTTGCGCTTTCGACCTGGGGAGCTATTGCCACAGCCAATGCTGCTGC
TTCCGCAGCTTAAAATATGCCCTTGCCCTGCCTTTTGCTGCACCGAGGAT
GACAGGTCTTGCGCGGACGGGCCTGCCAAAGTGACGACGTGGGTGCTCGC
CGCCATGGTAGCCGTGGGGCCGCGATGGTGGTGGTGATGATGGCTCTGCA
TTTTCTTTCGCGCGAACTGCTGCTGCTCCAAGCTCACGTAATCCTGTTAG
CACTTATACTTCTTCTTTTTCTGTGTGCTGGGTGCGGAGCAGGTGTTTGC
GTGGACGTATATTTGGCACAACACGGACGACAGCGAATATGATCGGGCGG
CCCAGAAAGGCTTCTTCGGCCAGAGAGCTGTT
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protein sequence of jgi.p|Nanoce1779_2|575510

>mRNA_1144-protein ID=mRNA_1144-protein|Name=jgi.p|Nanoce1779_2|575510|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MEEEGREEVREEGTGCGRTAAPTAAEAAAAAAIRVPSYTGSVDDGKVEER
VGGGGAEGVNADTACLTPWLAWLTPENSPGRSASSPPPWLLPPFPPFLSW
LLLLSTRKGLSAEVGNKGCVGAFPLPLLMLLLLLLVAWGKGPSSNLRFRP
GELLPQPMLLLPQLKICPCPAFCCTEDDRSCADGPAKVTTWVLAAMVAVG
PRWWW*
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mRNA from alignment at scaffold_2:1340482..1341616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1144 ID=mRNA_1144|Name=jgi.p|Nanoce1779_2|575510|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp|location=Sequence derived from alignment at scaffold_2:1340482..1341616+ (Nannochloropsis oceanica)
CCCTGGGGGAGGGTCGTCAAGGGGGAGGGGGGAGGAGGAGGAGGAGGGGA
AGGAGGAGGCGGAGACAAGGGATGGATCAAGGAGGGGGAGGGAGGGAGGG
CAGATGGGGGGGGAGGAGGGGTCTTCCTGTTGCTGGAGCTGATAGGGTGG
TCGGGGCGGGGGAGGAGGCATGGAGGAGGAGGGGCGCGAGGAGGTGAGGG
AGGAGGGGACAGGGTGTGGTAGAACGGCAGCACCTACAGCAGCAGAAGCA
GCTGCCGCAGCAGCAATTAGAGTGCCATCGTATACGGGCTCCGTCGATGA
TGGCAAGGTAGAGGAAAGAGTGGGCGGTGGTGGCGCCGAGGGTGTGAATG
CAGACACTGCTTGTTTGACGCCGTGGCTGGCATGGCTCACGCCGGAGAAC
TCACCGGGACGGTCTGCCTCATCTCCTCCGCCATGGCTGCTGCCACCATT
TCCGCCGTTTCTGTCATGGTTATTGCTGCTGTCGACAAGGAAAGGTTTGA
GTGCTGAGGTCGGAAACAAAGGTTGCGTGGGAGCGTTCCCGTTGCCGTTG
CTGATGTTGTTGCTGCTGCTACTGGTGGCTTGGGGGAAAGGCCCTTCCTC
AAACTTGCGCTTTCGACCTGTGCATGTGAGGGGAAATCAATCAAGACAGT
GTGGGGTTTAATGTAACATATCTCCTTTTTTTTAATTCCCCGGTGCGCCC
TCAAAATACTCCTTGGGATGTTTTCCATGTGGCGAACCGATCCCTTCCCC
TTCCTTTCGGTCTTTCTCACCTGGGGAGCTATTGCCACAGCCAATGCTGC
TGCTTCCGCAGCTTAAAATATGCCCTTGCCCTGCCTTTTGCTGCACCGAG
GATGACAGGTCTTGCGCGGACGGGCCTGCCAAAGTGACGACGTGGGTGCT
CGCCGCCATGGTAGCCGTGGGGCCGCGATGGTGGTGGTGATGATGGCTCT
GCATTTTCTTTCGCGCGAACTGCTGCTGCTCCAAGCTCACGTAATCCTGT
TAGCACTTATACTTCTTCTTTTTCTGTGTGCTGGGTGCGGAGCAGGTGTT
TGCGTGGACGTATATTTGGCACAACACGGACGACAGCGAATATGATCGGG
CGGCCCAGAAAGGCTTCTTCGGCCAGAGAGCTGTT
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Coding sequence (CDS) from alignment at scaffold_2:1340482..1341616+

>mRNA_1144 ID=mRNA_1144|Name=jgi.p|Nanoce1779_2|575510|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_2:1340482..1341616+ (Nannochloropsis oceanica)
ATGGAGGAGGAGGGGCGCGAGGAGGTGAGGGAGGAGGGGACAGGGTGTGG
TAGAACGGCAGCACCTACAGCAGCAGAAGCAGCTGCCGCAGCAGCAATTA
GAGTGCCATCGTATACGGGCTCCGTCGATGATGGCAAGGTAGAGGAAAGA
GTGGGCGGTGGTGGCGCCGAGGGTGTGAATGCAGACACTGCTTGTTTGAC
GCCGTGGCTGGCATGGCTCACGCCGGAGAACTCACCGGGACGGTCTGCCT
CATCTCCTCCGCCATGGCTGCTGCCACCATTTCCGCCGTTTCTGTCATGG
TTATTGCTGCTGTCGACAAGGAAAGGTTTGAGTGCTGAGGTCGGAAACAA
AGGTTGCGTGGGAGCGTTCCCGTTGCCGTTGCTGATGTTGTTGCTGCTGC
TACTGGTGGCTTGGGGGAAAGGCCCTTCCTCAAACTTGCGCTTTCGACCT
GGGGAGCTATTGCCACAGCCAATGCTGCTGCTTCCGCAGCTTAAAATATG
CCCTTGCCCTGCCTTTTGCTGCACCGAGGATGACAGGTCTTGCGCGGACG
GGCCTGCCAAAGTGACGACGTGGGTGCTCGCCGCCATGGTAGCCGTGGGG
CCGCGATGGTGGTGGTGAATGGAGGAGGAGGGGCGCGAGGAGGTGAGGGA
GGAGGGGACAGGGTGTGGTAGAACGGCAGCACCTACAGCAGCAGAAGCAG
CTGCCGCAGCAGCAATTAGAGTGCCATCGTATACGGGCTCCGTCGATGAT
GGCAAGGTAGAGGAAAGAGTGGGCGGTGGTGGCGCCGAGGGTGTGAATGC
AGACACTGCTTGTTTGACGCCGTGGCTGGCATGGCTCACGCCGGAGAACT
CACCGGGACGGTCTGCCTCATCTCCTCCGCCATGGCTGCTGCCACCATTT
CCGCCGTTTCTGTCATGGTTATTGCTGCTGTCGACAAGGAAAGGTTTGAG
TGCTGAGGTCGGAAACAAAGGTTGCGTGGGAGCGTTCCCGTTGCCGTTGC
TGATGTTGTTGCTGCTGCTACTGGTGGCTTGGGGGAAAGGCCCTTCCTCA
AACTTGCGCTTTCGACCTGGGGAGCTATTGCCACAGCCAATGCTGCTGCT
TCCGCAGCTTAAAATATGCCCTTGCCCTGCCTTTTGCTGCACCGAGGATG
ACAGGTCTTGCGCGGACGGGCCTGCCAAAGTGACGACGTGGGTGCTCGCC
GCCATGGTAGCCGTGGGGCCGCGATGGTGGTGGTGA
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Synonyms
Publications