jgi.p|Nanoce1779_2|636383, mRNA_1142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636383
Unique NamemRNA_1142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length411
Alignment locationscaffold_2:1338202..1338858 +

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Properties
Property NameValue
TranscriptId636469
TrackFilteredModels2
ProteinId636383
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1338202..1338858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636383gene_1142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636383mRNA_1142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1142CDS_1142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Nanoce1779_2|636383|organism=Nannochloropsis oceanica|type=mRNA|length=411bp
ATGGGCACGGTAGCCTCTAAGGACAAGAACAAGAAGAAGAAGGGTGGTGG
AGGAGGAAGCGGCGAGGATGGGGGCGGGGACGCGAGCAAGAACGCGTGGT
ACATCAAGATGATCGACGAGCCACCAGGACAACTCACCAGGGCCTTTCCC
GAAGAAACTCAAGCGAAATTCCGTGCCATAGGGCACAAATACAACGTGGA
ATACAACCGTCGGGCAAGCCGGCACGCAGGGGACTTGCACCGGAAAGTGA
AACTTAAATTAGAGGCGATCAACGCGCTGCCTGAAGAACTGCAAGCCGAA
GCAAATACTATGGATTTTACGCCTTTTCCCCTCGGGCGGAGGATCACAAC
GTACACTCCTCCTATTCCGGGGTTTGAAGCGGGGAAGTATGACTTATCGG
GGGCAGTCTGA
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protein sequence of jgi.p|Nanoce1779_2|636383

>mRNA_1142-protein ID=mRNA_1142-protein|Name=jgi.p|Nanoce1779_2|636383|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MGTVASKDKNKKKKGGGGGSGEDGGGDASKNAWYIKMIDEPPGQLTRAFP
EETQAKFRAIGHKYNVEYNRRASRHAGDLHRKVKLKLEAINALPEELQAE
ANTMDFTPFPLGRRITTYTPPIPGFEAGKYDLSGAV*
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mRNA from alignment at scaffold_2:1338202..1338858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Nanoce1779_2|636383|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_2:1338202..1338858+ (Nannochloropsis oceanica)
ATGGGCACGGTAGCCTCTAAGGACAAGAACAAGAAGAAGAAGGGTGGTGG
AGGAGGAAGCGGCGAGGATGGGGGCGGGGACGCGAGCAAGAACGCGTGGT
ACATCAAGATGATCGACGAGCCACCAGGACAACTGTACGTTGGATTCGGG
GTGGATGAAACAAGGGAAGTGGGGGGGACAGAGGGGACGGACTGAGCAGG
GTCAGTGTCATCATTTGTCCAATTTCCGTGTGTGTGAGGGGCTGGGGGGC
GGGTACTTGTACGGATGTGTGGATGTGTTGATAGCATCCCGTGTCAGCGC
ACTTTCCTCTCACAACAAGAAGCACGAAAAATTCACCCCCTCTCCCACTC
TCTCTCCTCCCCCTCCTTTTAACTCAACAGCACCAGGGCCTTTCCCGAAG
AAACTCAAGCGAAATTCCGTGCCATAGGGCACAAATACAACGTGGAATAC
AACCGTCGGGCAAGCCGGCACGCAGGGGACTTGCACCGGAAAGTGAAACT
TAAATTAGAGGCGATCAACGCGCTGCCTGAAGAACTGCAAGCCGAAGCAA
ATACTATGGATTTTACGCCTTTTCCCCTCGGGCGGAGGATCACAACGTAC
ACTCCTCCTATTCCGGGGTTTGAAGCGGGGAAGTATGACTTATCGGGGGC
AGTCTGA
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Coding sequence (CDS) from alignment at scaffold_2:1338202..1338858+

>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Nanoce1779_2|636383|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_2:1338202..1338858+ (Nannochloropsis oceanica)
ATGGGCACGGTAGCCTCTAAGGACAAGAACAAGAAGAAGAAGGGTGGTGG
AGGAGGAAGCGGCGAGGATGGGGGCGGGGACGCGAGCAAGAACGCGTGGT
ACATCAAGATGATCGACGAGCCACCAGGACAACTCACCAGGGCCTTTCCC
GAAGAAACTCAAGCGAAATTCCGTGCCATAGGGCACAAATACAACGTGGA
ATACAACCGTCGGGCAAGCCGGCACGCAGGGGACTTGCACCGGAAAGTGA
AACTTAAATTAGAGGCGATCAACGCGCTGCCTGAAGAACTGCAAGCCGAA
GCAAATACTATGGATTTTACGCCTTTTCCCCTCGGGCGGAGGATCACAAC
GTACACTCCTCCTATTCCGGGGTTTGAAGCGGGGAAGTATGACTTATCGG
GGGCAGTCTGAATGGGCACGGTAGCCTCTAAGGACAAGAACAAGAAGAAG
AAGGGTGGTGGAGGAGGAAGCGGCGAGGATGGGGGCGGGGACGCGAGCAA
GAACGCGTGGTACATCAAGATGATCGACGAGCCACCAGGACAACTCACCA
GGGCCTTTCCCGAAGAAACTCAAGCGAAATTCCGTGCCATAGGGCACAAA
TACAACGTGGAATACAACCGTCGGGCAAGCCGGCACGCAGGGGACTTGCA
CCGGAAAGTGAAACTTAAATTAGAGGCGATCAACGCGCTGCCTGAAGAAC
TGCAAGCCGAAGCAAATACTATGGATTTTACGCCTTTTCCCCTCGGGCGG
AGGATCACAACGTACACTCCTCCTATTCCGGGGTTTGAAGCGGGGAAGTA
TGACTTATCGGGGGCAGTCTGA
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Synonyms
Publications