jgi.p|Nanoce1779_2|575498, mRNA_1140 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575498
Unique NamemRNA_1140
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1267
Alignment locationscaffold_2:1332838..1334104 +

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Properties
Property NameValue
TranscriptId575584
TrackFilteredModels2
ProteinId575498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1332838..1334104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575498gene_1140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575498mRNA_1140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1140CDS_1140Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1140 ID=mRNA_1140|Name=jgi.p|Nanoce1779_2|575498|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp
CTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGCA
AACCAATCGATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAAC
AAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGA
CAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTACT
GCTACTGCCGCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGAG
GAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCT
CGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAAC
CAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCGA
CAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCCA
CGTTGAACAAGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGAC
CCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGCA
CTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAAC
TGACGTCCAACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATGG
GACACGACGGAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATGG
CAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGGC
AGGGACGGCCTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTCTTTTT
AATGCCACGCACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGCT
GGAGGCGATTGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGAT
GGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGAG
CTGAAGACGAATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTTG
GGATTATTTGTAGGAACGATGGGTGTGAAAAGGGATGGAGAGAGGAAGAA
GAGGAACGGGTTGCTTTGCTTGCTTCTCCCTCTTGGTAGCGTACTGTCCT
CTTTAAATGTAATGCTGGTAATTCGCACCGTAGATTTCTTGTAACACGAC
CAGATGGATAGAAAATTGAATGAGAAATACCGATGACCAGTGCGTGTTTT
ACGACGAGCTAAAAGCAAAGTGACAAATAGGAGGAATCAAAAAAGAAGAA
TGATATGCAAGTAACAA
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protein sequence of jgi.p|Nanoce1779_2|575498

>mRNA_1140-protein ID=mRNA_1140-protein|Name=jgi.p|Nanoce1779_2|575498|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MSEASPRTEIGDETKRAVMRKTLLPGTKTETVTAGAANGGDSDAGATATA
ATAAATPGSQTTTRKTKTLVSPDVQGKANSSIIIREDRAIHAMEIGNQMM
QDVWETLESTGLLDNTLVSFQSDHGETADSTLNKPLAGPVLHKRLADPDS
LYLATPLWMHIPPHLLSSSEREVLSENRDKLTSNMDLMPTFVEVLKWDTT
ENMFRERPSIFKHGRSLLRPVEADRLTSGWQGRPFVKSCDWTHGFLFNAT
HTLILRAGENHAVLEAIDQEDGAWTTVKERWAVKDLPAEEVAWWTRELKT
NHADMVMALKDCSWDYL*
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mRNA from alignment at scaffold_2:1332838..1334104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1140 ID=mRNA_1140|Name=jgi.p|Nanoce1779_2|575498|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_2:1332838..1334104+ (Nannochloropsis oceanica)
CTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGCA
AACCAATCGATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAAC
AAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGA
CAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTACT
GCTACTGCCGCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGAG
GAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCT
CGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAAC
CAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCGA
CAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCCA
CGTTGAACAAGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGAC
CCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGCA
CTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAAC
TGACGTCCAACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATGG
GACACGACGGAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATGG
CAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGGC
AGGGACGGCCTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTCTTTTT
AATGCCACGCACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGCT
GGAGGCGATTGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGAT
GGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGAG
CTGAAGACGAATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTTG
GGATTATTTGTAGGAACGATGGGTGTGAAAAGGGATGGAGAGAGGAAGAA
GAGGAACGGGTTGCTTTGCTTGCTTCTCCCTCTTGGTAGCGTACTGTCCT
CTTTAAATGTAATGCTGGTAATTCGCACCGTAGATTTCTTGTAACACGAC
CAGATGGATAGAAAATTGAATGAGAAATACCGATGACCAGTGCGTGTTTT
ACGACGAGCTAAAAGCAAAGTGACAAATAGGAGGAATCAAAAAAGAAGAA
TGATATGCAAGTAACAA
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Coding sequence (CDS) from alignment at scaffold_2:1332838..1334104+

>mRNA_1140 ID=mRNA_1140|Name=jgi.p|Nanoce1779_2|575498|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_2:1332838..1334104+ (Nannochloropsis oceanica)
ATGTCAGAAGCAAGTCCAAGAACAGAGATAGGCGACGAAACAAAGCGTGC
CGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGACAGTCACGG
CTGGTGCTGCAAATGGTGGTGATAGTGATGCCGGTGCTACTGCTACTGCC
GCCACTGCGGCTGCTACTCCAGGAAGTCAAACGACGACGAGGAAGACAAA
GACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCTCGATTATAA
TAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAACCAAATGATG
CAAGACGTGTGGGAGACGCTCGAGTCCACCGGCTTGCTCGACAACACCCT
CGTCTCCTTCCAGAGCGACCACGGGGAGACAGCGGACTCCACGTTGAACA
AGCCCTTAGCAGGCCCCGTGCTCCACAAGCGTTTGGCAGACCCTGATTCT
CTCTATCTCGCCACGCCGCTCTGGATGCACATCCCTCCGCACTTGCTATC
GTCGTCAGAGCGTGAGGTACTGTCAGAAAATCGAGACAAACTGACGTCCA
ACATGGATTTGATGCCTACCTTTGTGGAGGTCTTGAAATGGGACACGACG
GAAAACATGTTCAGGGAAAGACCATCCATTTTCAAGCATGGCAGATCGTT
GCTTCGCCCAGTGGAGGCAGATCGGTTGACGTCTGGCTGGCAGGGACGGC
CTTTTGTCAAGAGCTGCGATTGGACCCATGGTTTTCTTTTTAATGCCACG
CACACGCTCATTCTGCGGGCGGGGGAAAACCATGCCGTGCTGGAGGCGAT
TGACCAGGAAGACGGGGCCTGGACGACGGTGAAGGAACGATGGGCGGTGA
AGGACTTGCCGGCAGAGGAGGTGGCGTGGTGGACACGGGAGCTGAAGACG
AATCATGCGGATATGGTAATGGCGTTGAAGGATTGCTCTTGGGATTATTT
GTAG
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Synonyms
Publications