jgi.p|Nanoce1779_2|550722, mRNA_114 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|550722
Unique Name	mRNA_114
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1824
Alignment location	scaffold_3:304892..306715 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	550808
Track	FilteredModels2
ProteinId	550722

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:304892..306715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550722	gene_114	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550722	mRNA_114-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_114	CDS_114	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:304892..306715+
coding sequence from alignment at scaffold_3:304892..306715+

mRNA sequence

>mRNA_114 ID=mRNA_114|Name=jgi.p|Nanoce1779_2|550722|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
ATGTGCTCAACTCCCTCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAA
GCCCAAGCATGAATGGAGCCAAACGTCAACCACCACTAGCAGCACCAGCA
AGACCACGACCACCAGTCCCAGCAGGAGTGGTATCACCAACAGCAGCACC
TGCACCACCAATACCACCACCGCCACCACCCGTTTGCCCATCCAAGACCA
CGACACACCCGCGGCCTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGG
CCTTAGTGGAGGGGCTGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCT
GTGTGGCTTGAGCAGCACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCA
TCAATCGGCCCGTTGCCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGG
CATTTGTGTCCCGGGATAAGGTGACGACACTGGTGCAGGAACTGATTTTG
ATGGATTGCTGGAGGGAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGAT
AAATCGTGGGGCAACCATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAA
CTGTGGTGAATTTATTGGAGGTATTGTTTTATCATTTGAAGGCATGTGAA
GCGGCGGGGGATGCTTTAATTGACCTTGTGGATTACTGTGCCGGGAAAAT
AGTCTTACTTAATGGTGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAA
AAGCAGCAGCGGAACAAACGGGCATCAGCGAAAACGATATCAGGGCGCGT
GTTGCAGCAATGGCCGTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGC
ACGAAAGATAGATTTTCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTC
TTCTTTGCGGTCATCTAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTC
CTTCACACTCATGACATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCC
ACCCTGGACCCGCAAACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCA
ACAGCAAGCGCATCACCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGG
CACGTTGTAGCACCCGCAGAACTCCTTTTGCTGACCAAACACGAGGCCCA
GGCATGGCTCATGCTTTTCCACCTCATCACCAGCCCTCAGACGCGACAAC
AGTACCATCTCAATCGCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAG
TATATGACAGAACCACTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCG
GAGGTATCTGGATGAGCTGGCCTTGATGGAGGTACCTGAACCTACAGCTG
GTGGGGGAGGAAGGGGGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTG
GTCGAGCAGGTGGCACAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTT
GAAAAGGGGAGTTGGGCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGG
AGGGTTTGGCGCTAATGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGG
GACGCCCGGGATCAGGATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGA
GTGGGTAGATGAGGTGGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTG
GGAGTAATGATGGTCAGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGA
GGGGAAGGACGGCACGAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGC
GAGCAAGCGGTGTGGACGTTGCAATATTGCGTCAGAATGGTACTGTGGTC
GGCAGTGCCAGGTGGCAAAGTGGAAGAGTCATAAACCCGCGTGTGATACC
GTGGTGTCGGCGCGGGCAGTATGA

protein sequence of jgi.p|Nanoce1779_2|550722

>mRNA_114-protein ID=mRNA_114-protein|Name=jgi.p|Nanoce1779_2|550722|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MCSTPSFFSSSRVPNSKPKHEWSQTSTTTSSTSKTTTTSPSRSGITNSST
CTTNTTTATTRLPIQDHDTPAAFSPLLSVGEAEALVEGLCVFNLQDVGSS
VWLEQHQALERLNAQAHQSARCPDASQDEFVLEAFVSRDKVTTLVQELIL
MDCWREKVWPRVMLEVINRGATMRAYFVLFHEATVVNLLEVLFYHLKACE
AAGDALIDLVDYCAGKIVLLNGGMFSGNSISGAKAAAEQTGISENDIRAR
VAAMAVRDPEESFKEQARKIDFQVAVTAVGILRLLCGHLEDLPLGVGTRL
LHTHDIPLSLIPLLESPPWTRKQSNSSNSSNSSNSKRITSWEKLGPDFNW
HVVAPAELLLLTKHEAQAWLMLFHLITSPQTRQQYHLNRYRKDQLLRLRK
YMTEPLLDQIPVLADVRRYLDELALMEVPEPTAGGGGRGAGGGGAPGLLL
VEQVAQLRAGILAGVALKRGVGRRCKEGEDKMWEGLALMVLKENFGTEGG
DARDQDLRRLASLYSCEWVDEVVASATAGAIHGGSNDGQVTVAEEKEEGG
GEGRHEGRLCSNCGKEASKRCGRCNIASEWYCGRQCQVAKWKSHKPACDT
VVSARAV*

mRNA from alignment at scaffold_3:304892..306715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_114 ID=mRNA_114|Name=jgi.p|Nanoce1779_2|550722|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp|location=Sequence derived from alignment at scaffold_3:304892..306715+ (Nannochloropsis oceanica)
ATGTGCTCAACTCCCTCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAA
GCCCAAGCATGAATGGAGCCAAACGTCAACCACCACTAGCAGCACCAGCA
AGACCACGACCACCAGTCCCAGCAGGAGTGGTATCACCAACAGCAGCACC
TGCACCACCAATACCACCACCGCCACCACCCGTTTGCCCATCCAAGACCA
CGACACACCCGCGGCCTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGG
CCTTAGTGGAGGGGCTGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCT
GTGTGGCTTGAGCAGCACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCA
TCAATCGGCCCGTTGCCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGG
CATTTGTGTCCCGGGATAAGGTGACGACACTGGTGCAGGAACTGATTTTG
ATGGATTGCTGGAGGGAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGAT
AAATCGTGGGGCAACCATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAA
CTGTGGTGAATTTATTGGAGGTATTGTTTTATCATTTGAAGGCATGTGAA
GCGGCGGGGGATGCTTTAATTGACCTTGTGGATTACTGTGCCGGGAAAAT
AGTCTTACTTAATGGTGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAA
AAGCAGCAGCGGAACAAACGGGCATCAGCGAAAACGATATCAGGGCGCGT
GTTGCAGCAATGGCCGTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGC
ACGAAAGATAGATTTTCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTC
TTCTTTGCGGTCATCTAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTC
CTTCACACTCATGACATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCC
ACCCTGGACCCGCAAACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCA
ACAGCAAGCGCATCACCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGG
CACGTTGTAGCACCCGCAGAACTCCTTTTGCTGACCAAACACGAGGCCCA
GGCATGGCTCATGCTTTTCCACCTCATCACCAGCCCTCAGACGCGACAAC
AGTACCATCTCAATCGCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAG
TATATGACAGAACCACTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCG
GAGGTATCTGGATGAGCTGGCCTTGATGGAGGTACCTGAACCTACAGCTG
GTGGGGGAGGAAGGGGGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTG
GTCGAGCAGGTGGCACAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTT
GAAAAGGGGAGTTGGGCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGG
AGGGTTTGGCGCTAATGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGG
GACGCCCGGGATCAGGATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGA
GTGGGTAGATGAGGTGGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTG
GGAGTAATGATGGTCAGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGA
GGGGAAGGACGGCACGAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGC
GAGCAAGCGGTGTGGACGTTGCAATATTGCGTCAGAATGGTACTGTGGTC
GGCAGTGCCAGGTGGCAAAGTGGAAGAGTCATAAACCCGCGTGTGATACC
GTGGTGTCGGCGCGGGCAGTATGA

Coding sequence (CDS) from alignment at scaffold_3:304892..306715+

>mRNA_114 ID=mRNA_114|Name=jgi.p|Nanoce1779_2|550722|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_3:304892..306715+ (Nannochloropsis oceanica)
ATGTGCTCAACTCCCTCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAA
GCCCAAGCATGAATGGAGCCAAACGTCAACCACCACTAGCAGCACCAGCA
AGACCACGACCACCAGTCCCAGCAGGAGTGGTATCACCAACAGCAGCACC
TGCACCACCAATACCACCACCGCCACCACCCGTTTGCCCATCCAAGACCA
CGACACACCCGCGGCCTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGG
CCTTAGTGGAGGGGCTGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCT
GTGTGGCTTGAGCAGCACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCA
TCAATCGGCCCGTTGCCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGG
CATTTGTGTCCCGGGATAAGGTGACGACACTGGTGCAGGAACTGATTTTG
ATGGATTGCTGGAGGGAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGAT
AAATCGTGGGGCAACCATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAA
CTGTGGTGAATTTATTGGAGGTATTGTTTTATCATTTGAAGGCATGTGAA
GCGGCGGGGGATGCTTTAATTGACCTTGTGGATTACTGTGCCGGGAAAAT
AGTCTTACTTAATGGTGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAA
AAGCAGCAGCGGAACAAACGGGCATCAGCGAAAACGATATCAGGGCGCGT
GTTGCAGCAATGGCCGTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGC
ACGAAAGATAGATTTTCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTC
TTCTTTGCGGTCATCTAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTC
CTTCACACTCATGACATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCC
ACCCTGGACCCGCAAACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCA
ACAGCAAGCGCATCACCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGG
CACGTTGTAGCACCCGCAGAACTCCTTTTGCTGACCAAACACGAGGCCCA
GGCATGGCTCATGCTTTTCCACCTCATCACCAGCCCTCAGACGCGACAAC
AGTACCATCTCAATCGCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAG
TATATGACAGAACCACTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCG
GAGGTATCTGGATGAGCTGGCCTTGATGGAGGTACCTGAACCTACAGCTG
GTGGGGGAGGAAGGGGGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTG
GTCGAGCAGGTGGCACAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTT
GAAAAGGGGAGTTGGGCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGG
AGGGTTTGGCGCTAATGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGG
GACGCCCGGGATCAGGATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGA
GTGGGTAGATGAGGTGGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTG
GGAGTAATGATGGTCAGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGA
GGGGAAGGACGGCACGAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGC
GAGCAAGCGGTGTGGACGTTGCAATATTGCGTCAGAATGGTACTGTGGTC
GGCAGTGCCAGGTGGCAAAGTGGAAGAGTCATAAACCCGCGTGTGATACC
GTGGTGTCGGCGCGGGCAGTATGA

Synonyms

Publications