jgi.p|Nanoce1779_2|575492, mRNA_1139 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575492
Unique Name	mRNA_1139
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1609
Alignment location	scaffold_2:1329128..1330736 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575578
Track	FilteredModels2
ProteinId	575492

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1329128..1330736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575492	gene_1139	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575492	mRNA_1139-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1139	CDS_1139	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1329128..1330736+
coding sequence from alignment at scaffold_2:1329128..1330736+

mRNA sequence

>mRNA_1139 ID=mRNA_1139|Name=jgi.p|Nanoce1779_2|575492|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp
CTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGCA
AACCAATCGATGTCAGAAGCAAGTCCAAGAACGGAGATAGGCGACGAAAC
AAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGA
CAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCTGGTGCTACT
GCTACTGCCGCCACTGCGGCTGCTACTCCAGGGAGTCAAACGACGACGAG
GAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCT
CGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAAC
CAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACTAGCTTGCTCGA
CAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAATGGGCACCG
CGGTCCGCAAGCGTTTGGCAGACCCTGATTCTCTCTATCTCGCCACGCCG
CTCTGGATGCACATCCCTCCGCACTTGCTATCGTCGTCAGAGCGTGAGGT
ACTGTCAGAAAATCGAGACAAACTGACGTCCAACATGGATTTGATGCCTA
CCTTTGTGGAGGTCTTGAAATGGGACACGACGGAAAACATGTTCAGGGAA
AGACCATCCATTTTCAAGCATGGCAGATCGTTGCTTCGCCCAGTGGAGGC
AGATCGGTTGACGTCTGGCTGGCAGGGACGGCCTTTTGTCGAGAGCTGCG
ATTGGACCCATGGTTTTCTTTTTAATGCCACGCACACGCTCATTCTGCGG
GCGGGGGAAAACCATGCCGTGCTGGAGGCGATTGACCAGGAAGACGGGGC
CTGGACGACGGTGAAGGAACGATGGGCGGTGAAGGACTTGCCGGCAGAGG
AGGTGGCGTGGTGGACACGGGAGCTGAAGACGAATCATGCGGATATGGTA
ATGGCGTTGACGGAGTGCTTTTGGAATTATTTGTAAGGACGGCTAATCTG
GATTGTAGACATATCTGGATACTACCAGGTAGATAGATTGGATGTACCGG
TAAACAGTACGTATTGCACGGCACGCTAGGAGCAAAGTATTTTACTATCA
AGAGATGGATTTGAAGACAAACGAAAAGCAAGTAACGGAGTGTAGATGGC
ATCATCCGTTTTGGCCTGTCTCGGGTTTTGACCCGCTTTCAACTCTATTC
ACGCTTTTTGGATCTCTTGACACAAACGTGATCGTTTGTAGTTATGCCAT
TACTACTGTTTCTCCTGCCGCTTCCTCTTGAAAAGATGGGACGGCACAAG
ACGTATCCACCCACCTGGCTCGGAACTGCACCACTGCTGGTTGGCAAGGT
CGTCAGTTTGTAGGGTCATGCGCCTGGCAACTCGGCTTCACGAGCAATAC
GACGCATTACGTGATTTTGATAAACAAGATGAATGAGATTGTGGGCTCGC
TGGCCGAGGTTGCCCGGCGGTGGGCGCTGCGGCAACGAGACACATACCGA
TGCTCGGGCCCGCTTAGGCCTGTTTCTTTGATTACGGAATACTTGATTAA
AATGAAGATGTCGGTGGGGAAGTCTGTCGTATATGGTTCGGTACTGCAGG
AAAAATACT

protein sequence of jgi.p|Nanoce1779_2|575492

>mRNA_1139-protein ID=mRNA_1139-protein|Name=jgi.p|Nanoce1779_2|575492|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MSEASPRTEIGDETKRAVMRKTLLPGTKTETVTAGAANGGDSDAGATATA
ATAAATPGSQTTTRKTKTLVSPDVQGKANSSIIIREDRAIHAMEIGNQMM
QDVWETLESTSLLDNTLVSFQSDHGETMGTAVRKRLADPDSLYLATPLWM
HIPPHLLSSSEREVLSENRDKLTSNMDLMPTFVEVLKWDTTENMFRERPS
IFKHGRSLLRPVEADRLTSGWQGRPFVESCDWTHGFLFNATHTLILRAGE
NHAVLEAIDQEDGAWTTVKERWAVKDLPAEEVAWWTRELKTNHADMVMAL
TECFWNYL*

mRNA from alignment at scaffold_2:1329128..1330736+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1139 ID=mRNA_1139|Name=jgi.p|Nanoce1779_2|575492|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at scaffold_2:1329128..1330736+ (Nannochloropsis oceanica)
CTCCATTCTTGCAAAATCCACGATATGAGCGCGCGGGAGATCTCGCCGCA
AACCAATCGATGTCAGAAGCAAGTCCAAGAACGGAGATAGGCGACGAAAC
AAAGCGTGCCGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGA
CAGTCACGGCTGGTGCTGCAAATGGTGGTGATAGTGATGCTGGTGCTACT
GCTACTGCCGCCACTGCGGCTGCTACTCCAGGGAGTCAAACGACGACGAG
GAAGACAAAGACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCT
CGATTATAATAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAAC
CAAATGATGCAAGACGTGTGGGAGACGCTCGAGTCCACTAGCTTGCTCGA
CAACACCCTCGTCTCCTTCCAGAGCGACCACGGGGAGACAATGGGCACCG
CGGTCCGCAAGCGTTTGGCAGACCCTGATTCTCTCTATCTCGCCACGCCG
CTCTGGATGCACATCCCTCCGCACTTGCTATCGTCGTCAGAGCGTGAGGT
ACTGTCAGAAAATCGAGACAAACTGACGTCCAACATGGATTTGATGCCTA
CCTTTGTGGAGGTCTTGAAATGGGACACGACGGAAAACATGTTCAGGGAA
AGACCATCCATTTTCAAGCATGGCAGATCGTTGCTTCGCCCAGTGGAGGC
AGATCGGTTGACGTCTGGCTGGCAGGGACGGCCTTTTGTCGAGAGCTGCG
ATTGGACCCATGGTTTTCTTTTTAATGCCACGCACACGCTCATTCTGCGG
GCGGGGGAAAACCATGCCGTGCTGGAGGCGATTGACCAGGAAGACGGGGC
CTGGACGACGGTGAAGGAACGATGGGCGGTGAAGGACTTGCCGGCAGAGG
AGGTGGCGTGGTGGACACGGGAGCTGAAGACGAATCATGCGGATATGGTA
ATGGCGTTGACGGAGTGCTTTTGGAATTATTTGTAAGGACGGCTAATCTG
GATTGTAGACATATCTGGATACTACCAGGTAGATAGATTGGATGTACCGG
TAAACAGTACGTATTGCACGGCACGCTAGGAGCAAAGTATTTTACTATCA
AGAGATGGATTTGAAGACAAACGAAAAGCAAGTAACGGAGTGTAGATGGC
ATCATCCGTTTTGGCCTGTCTCGGGTTTTGACCCGCTTTCAACTCTATTC
ACGCTTTTTGGATCTCTTGACACAAACGTGATCGTTTGTAGTTATGCCAT
TACTACTGTTTCTCCTGCCGCTTCCTCTTGAAAAGATGGGACGGCACAAG
ACGTATCCACCCACCTGGCTCGGAACTGCACCACTGCTGGTTGGCAAGGT
CGTCAGTTTGTAGGGTCATGCGCCTGGCAACTCGGCTTCACGAGCAATAC
GACGCATTACGTGATTTTGATAAACAAGATGAATGAGATTGTGGGCTCGC
TGGCCGAGGTTGCCCGGCGGTGGGCGCTGCGGCAACGAGACACATACCGA
TGCTCGGGCCCGCTTAGGCCTGTTTCTTTGATTACGGAATACTTGATTAA
AATGAAGATGTCGGTGGGGAAGTCTGTCGTATATGGTTCGGTACTGCAGG
AAAAATACT

Coding sequence (CDS) from alignment at scaffold_2:1329128..1330736+

>mRNA_1139 ID=mRNA_1139|Name=jgi.p|Nanoce1779_2|575492|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_2:1329128..1330736+ (Nannochloropsis oceanica)
ATGTCAGAAGCAAGTCCAAGAACGGAGATAGGCGACGAAACAAAGCGTGC
CGTCATGAGGAAGACCTTACTCCCGGGCACTAAGACGGAGACAGTCACGG
CTGGTGCTGCAAATGGTGGTGATAGTGATGCTGGTGCTACTGCTACTGCC
GCCACTGCGGCTGCTACTCCAGGGAGTCAAACGACGACGAGGAAGACAAA
GACACTTGTGTCGCCCGACGTACAGGGGAAGGCAAACTCCTCGATTATAA
TAAGAGAGGACCGCGCCATCCATGCCATGGAAATCGGAAACCAAATGATG
CAAGACGTGTGGGAGACGCTCGAGTCCACTAGCTTGCTCGACAACACCCT
CGTCTCCTTCCAGAGCGACCACGGGGAGACAATGGGCACCGCGGTCCGCA
AGCGTTTGGCAGACCCTGATTCTCTCTATCTCGCCACGCCGCTCTGGATG
CACATCCCTCCGCACTTGCTATCGTCGTCAGAGCGTGAGGTACTGTCAGA
AAATCGAGACAAACTGACGTCCAACATGGATTTGATGCCTACCTTTGTGG
AGGTCTTGAAATGGGACACGACGGAAAACATGTTCAGGGAAAGACCATCC
ATTTTCAAGCATGGCAGATCGTTGCTTCGCCCAGTGGAGGCAGATCGGTT
GACGTCTGGCTGGCAGGGACGGCCTTTTGTCGAGAGCTGCGATTGGACCC
ATGGTTTTCTTTTTAATGCCACGCACACGCTCATTCTGCGGGCGGGGGAA
AACCATGCCGTGCTGGAGGCGATTGACCAGGAAGACGGGGCCTGGACGAC
GGTGAAGGAACGATGGGCGGTGAAGGACTTGCCGGCAGAGGAGGTGGCGT
GGTGGACACGGGAGCTGAAGACGAATCATGCGGATATGGTAATGGCGTTG
ACGGAGTGCTTTTGGAATTATTTGTAA

Synonyms

Publications