jgi.p|Nanoce1779_2|575485, mRNA_1137 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575485
Unique NamemRNA_1137
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length381
Alignment locationscaffold_2:1324520..1325039 -

Link to JBrowse

Properties
Property NameValue
TranscriptId575571
TrackFilteredModels2
ProteinId575485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1324520..1325039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575485gene_1137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575485mRNA_1137-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1137CDS_1137Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1137 ID=mRNA_1137|Name=jgi.p|Nanoce1779_2|575485|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
ACAGGCACCGCCGCCAGCAGCAGTATTTCTAGATCAAGTTCACTCATGCC
AGGTCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGCAG
CCAAGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGGCG
GATGCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAAAA
ATAAAAAGAGAGTGAGGAGCTAGATTTGTGCCAGTGAAAGAGGAGGAAAA
GATGAGCGACCATACGTAGCACTGAATGCAGCCTGGCCAGAGGTGGAAAC
AAGTCTTGAACGAGGAGGACAAGGGGGAAGAAAGATGCCCTTATATCAAA
GTATGAACCAAGGGCGGGACACATCCACAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|575485

>mRNA_1137-protein ID=mRNA_1137-protein|Name=jgi.p|Nanoce1779_2|575485|organism=Nannochloropsis oceanica|type=polypeptide|length=53bp
MPGRDGGKAKPLKAPKKAAKEMTEEDLAFKAKQKADAAATKKAAEALKGK
KK*
back to top

mRNA from alignment at scaffold_2:1324520..1325039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1137 ID=mRNA_1137|Name=jgi.p|Nanoce1779_2|575485|organism=Nannochloropsis oceanica|type=mRNA|length=520bp|location=Sequence derived from alignment at scaffold_2:1324520..1325039- (Nannochloropsis oceanica)
ACAGGCACCGCCGCCAGCAGCAGTATTTCTAGATCAAGTTCACTCATGGT
ACGTCGCCTGTCTATTCTTGCATATTTGCCAGAATACCCAGGCCCCTCTC
CTCTCCCCCGCAGCCCGGTCCCTACCGACCGGCGACGGCACGCTCATCCA
TTCTCCTCCATCTCCGCACTCATCGCACCCCACACAGCCAGGTCGCGATG
GTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGCAGCCAAGGAGATG
ACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGGCGGATGCCGCGGC
CACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAAAAATAAAAAGAGA
GTGAGGAGCTAGATTTGTGCCAGTGAAAGAGGAGGAAAAGATGAGCGACC
ATACGTAGCACTGAATGCAGCCTGGCCAGAGGTGGAAACAAGTCTTGAAC
GAGGAGGACAAGGGGGAAGAAAGATGCCCTTATATCAAAGTATGAACCAA
GGGCGGGACACATCCACAGA
back to top

Coding sequence (CDS) from alignment at scaffold_2:1324520..1325039-

>mRNA_1137 ID=mRNA_1137|Name=jgi.p|Nanoce1779_2|575485|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_2:1324520..1325039- (Nannochloropsis oceanica)
CCAGGTCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACCCAAGAAGGC
AGCCAAGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCAAGCAGAAGG
CGGATGCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAGGGCAAGAAA
AAATAAATGCCAGGTCGCGATGGTGGCAAGGCCAAGCCCTTGAAGGCACC
CAAGAAGGCAGCCAAGGAGATGACCGAGGAAGACTTGGCTTTCAAGGCCA
AGCAGAAGGCGGATGCCGCGGCCACAAAGAAGGCGGCGGAGGCGCTCAAG
GGCAAGAAAAAATAAATG
back to top
Synonyms
Publications