jgi.p|Nanoce1779_2|575479, mRNA_1136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575479
Unique NamemRNA_1136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length983
Alignment locationscaffold_2:1321795..1323230 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575565
TrackFilteredModels2
ProteinId575479
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1321795..1323230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575479gene_1136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575479mRNA_1136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1136CDS_1136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1136 ID=mRNA_1136|Name=jgi.p|Nanoce1779_2|575479|organism=Nannochloropsis oceanica|type=mRNA|length=983bp
ACAGGCAGACACAACCATGAAGGCCTTCGCGTTCTTGGTTGCGCTATTGA
GCCTGGCTATGGCCCAAGCATTTTTGGGCCCCACTGCCCTCAAGGCGCCC
CGTGTGAACACCCTCTCCAGCCTCACCACCACTACCTCCCTCGCCCGGAA
GTCTGTCACCGTCATGCGCGAGCGCAAATGTGAACTCCTGGGTAAGCGCG
CCAACCGACAATGCCGCCTTGTGTCTTTCTCCCACATCCGCACCAAAAAG
AGCCAGGCTGTAAACCTGCACGAAAAGCGAGTGTGGTGGGCGGAGGGAAG
CAAGTTTGTCAGACTTCGCCTGTCGACCAAGGGATGGAGGACGGTGAAGA
AGTACGGACTGAACAAAGCTTTCAAGAAGTTCGAGGTGGATCTACACCAG
TTCCAGGCTCAGCACTAAAGAGGAGGAAGAAGGAAGAAGGGATGGGACTG
AGGGAGGGAAGAACTCATATAGATACTCGCATCGGAGGGGGAGAGGGAAG
AGGGGGAAGACGTGGTTATTCAAGGCCTGCTCTCCACTCTTTCCTGTCTC
CAGGGTCACAAATATATATCACGCTACAGCAATTCTCACAGAGCTCAAGG
CGACCTTGATGGCATGGACTGGTCGGACAAGGAGGGAGGGGTGTAGAGAG
ATAGAAGGGCTGTAGGGATGATGTGAAGCGCTTGTCTTTCACTCATTCGT
ACGAGAGTGAGAGAAAAAGGCATTTGTCCGTTGCCGTCCTTCTAATTTTT
ATCCTCCTTTTCTTGTGCCCATTCTTTTCTCCTTGTTTCTCTGTCAAGTG
CTTGCGTGCATGTAAGTGTGTGAGGGTTAGCGTGGGGAAGACGGGATGCC
CTTCTCCCCATATGCCAAGCACTCACACAAGGAAGAGCAGCAGGGGCCAT
GACAATAATCCAGAAGAAAATGAACGCCAGGCCGCGGCGGACCTGTGGAA
ACAAGAAGAAGAAAAACTCTTTTCGTGGAGTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|575479

>mRNA_1136-protein ID=mRNA_1136-protein|Name=jgi.p|Nanoce1779_2|575479|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MKAFAFLVALLSLAMAQAFLGPTALKAPRVNTLSSLTTTTSLARKSVTVM
RERKCELLGKRANRQCRLVSFSHIRTKKSQAVNLHEKRVWWAEGSKFVRL
RLSTKGWRTVKKYGLNKAFKKFEVDLHQFQAQH*
back to top

mRNA from alignment at scaffold_2:1321795..1323230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1136 ID=mRNA_1136|Name=jgi.p|Nanoce1779_2|575479|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp|location=Sequence derived from alignment at scaffold_2:1321795..1323230+ (Nannochloropsis oceanica)
ACAGGCAGACACAACCATGAAGGCCTTCGCGTTCTTGGTTGCGCTATTGA
GCCTGGCTATGGCCCAAGCATTTTTGGGCCCCACTGCCCTCAAGGCGCCC
CGTGTGGTAAGTGACGATAGAGAGAGGGATAGAGACGATGAATGAGAAGA
AGCGCGACGCAAAAAAGACGGTTTGTCGTAGGCTTAATATGTGCATGTGG
CTCCGATGGGAGCACCGGTGCCGGGGAAGGATGTGTCACGCCATTCTTCT
GCAGCAGTAAGCTATGCGGGATATCAGGCGCTATCCAGTGAATTAGGGAT
GAGTTCACCGCGCTCCTAGTATTCTTCTTACGATTGCCCTTCTCTTGTTG
CTAAGTCTGTATGTCTGCCTGTCAGCTGCGTTCGCTCGGTGACAAGACAC
TGACGCCGCGCGGCTCTCCTACCTACCCCTCTGCCCTCTATCTCTATTTA
TTTCTCCTTGTGCAATCAAGTACTTTCTCTTCCCCTTATTCATTTTACAA
CCCTCCTCATCCCTCCTTCTCCTCCCATCTTCCACTCTCCCTCCTCCCCC
CAATCACAGAACACCCTCTCCAGCCTCACCACCACTACCTCCCTCGCCCG
GAAGTCTGTCACCGTCATGCGCGAGCGCAAATGTGAACTCCTGGGTAAGC
GCGCCAACCGACAATGCCGCCTTGTGTCTTTCTCCCACATCCGCACCAAA
AAGAGCCAGGCTGTAAACCTGCACGAAAAGCGAGTGTGGTGGGCGGAGGG
AAGCAAGTTTGTCAGACTTCGCCTGTCGACCAAGGGATGGAGGACGGTGA
AGAAGTACGGACTGAACAAAGCTTTCAAGAAGTTCGAGGTGGATCTACAC
CAGTTCCAGGCTCAGCACTAAAGAGGAGGAAGAAGGAAGAAGGGATGGGA
CTGAGGGAGGGAAGAACTCATATAGATACTCGCATCGGAGGGGGAGAGGG
AAGAGGGGGAAGACGTGGTTATTCAAGGCCTGCTCTCCACTCTTTCCTGT
CTCCAGGGTCACAAATATATATCACGCTACAGCAATTCTCACAGAGCTCA
AGGCGACCTTGATGGCATGGACTGGTCGGACAAGGAGGGAGGGGTGTAGA
GAGATAGAAGGGCTGTAGGGATGATGTGAAGCGCTTGTCTTTCACTCATT
CGTACGAGAGTGAGAGAAAAAGGCATTTGTCCGTTGCCGTCCTTCTAATT
TTTATCCTCCTTTTCTTGTGCCCATTCTTTTCTCCTTGTTTCTCTGTCAA
GTGCTTGCGTGCATGTAAGTGTGTGAGGGTTAGCGTGGGGAAGACGGGAT
GCCCTTCTCCCCATATGCCAAGCACTCACACAAGGAAGAGCAGCAGGGGC
CATGACAATAATCCAGAAGAAAATGAACGCCAGGCCGCGGCGGACCTGTG
GAAACAAGAAGAAGAAAAACTCTTTTCGTGGAGTCA
back to top

Coding sequence (CDS) from alignment at scaffold_2:1321795..1323230+

>mRNA_1136 ID=mRNA_1136|Name=jgi.p|Nanoce1779_2|575479|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_2:1321795..1323230+ (Nannochloropsis oceanica)
ATGAAGGCCTTCGCGTTCTTGGTTGCGCTATTGAGCCTGGCTATGGCCCA
AGCATTTTTGGGCCCCACTGCCCTCAAGGCGCCCCGTGTGAACACCCTCT
CCAGCCTCACCACCACTACCTCCCTCGCCCGGAAGTCTGTCACCGTCATG
CGCGAGCGCAAATGTGAACTCCTGGGTAAGCGCGCCAACCGACAATGCCG
CCTTGTGTCTTTCTCCCACATCCGCACCAAAAAGAGCCAGGCTGTAAACC
TGCACGAAAAGCGAGTGTGGTGGGCGGAGGGAAGCAAGTTTGTCAGACTT
CGCCTGTCGACCAAGGGATGGAGGACGGTGAAGAAGTACGGACTGAACAA
AGCTTTCAAGAAGTTCGAGGTGGATCTACACCAGTTCCAGGCTCAGCACT
AAATGAAGGCCTTCGCGTTCTTGGTTGCGCTATTGAGCCTGGCTATGGCC
CAAGCATTTTTGGGCCCCACTGCCCTCAAGGCGCCCCGTGTGAACACCCT
CTCCAGCCTCACCACCACTACCTCCCTCGCCCGGAAGTCTGTCACCGTCA
TGCGCGAGCGCAAATGTGAACTCCTGGGTAAGCGCGCCAACCGACAATGC
CGCCTTGTGTCTTTCTCCCACATCCGCACCAAAAAGAGCCAGGCTGTAAA
CCTGCACGAAAAGCGAGTGTGGTGGGCGGAGGGAAGCAAGTTTGTCAGAC
TTCGCCTGTCGACCAAGGGATGGAGGACGGTGAAGAAGTACGGACTGAAC
AAAGCTTTCAAGAAGTTCGAGGTGGATCTACACCAGTTCCAGGCTCAGCA
CTAA
back to top
Synonyms
Publications