jgi.p|Nanoce1779_2|575471, mRNA_1135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575471
Unique NamemRNA_1135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1424
Alignment locationscaffold_2:1318915..1320465 -

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Properties
Property NameValue
TranscriptId575557
TrackFilteredModels2
ProteinId575471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1318915..1320465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575471gene_1135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575471mRNA_1135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1135CDS_1135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1135 ID=mRNA_1135|Name=jgi.p|Nanoce1779_2|575471|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp
ACAGCCAAACAACAAGCTACTCCACATCAGCTCCAAGCAAGTACCAAGAA
GGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCC
TTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTG
TGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAA
GGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGC
GATGGGCAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGC
GGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTC
TACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCT
CACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGG
TGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACG
GGCTTTGTGGCACACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTT
CAAATCGTATGGCTTCAACCCCCCCGAGATGAAGGATAACGACAAGACGG
TCGATTTTGTCATCCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACC
ACCGCCACAGTGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTC
CATTTCGGCGTCGCTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCA
CCGGGGACGCGGCGAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCC
GTGCCTGGAGACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGAC
TCCGGAAGGAGCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATC
AAACCAAGATGGCAGGGATGCGAATGCGTCGGGAGTAAGGAAGGGGTAGA
GGGATGGAAGGAAAGTCAAGGGAAGAGTGTGCGTGTTTATGAAAAAGTGT
ATGCATTGCTTGGCCGGCACGTGGCATACAGCTTTCCGACAGATTGTGGA
AAAGGAGGGTAGAAAAGATTATGGTAGAGTTATTGAGGAAGGTAATGATA
GATGTATTGTTTTGGGGTATCTTGTATGTACGACTGGTGTGTACGATCAA
CGTATCCTCAGAAGTGTGAGCAAAGACACACGAGAGGAAAGCAAACGAAA
CATGGCGCGGAGGAGGAGGCGACACTGTTTATCATAGAGCGGAAAAATAC
GGAAAGTGTTGACACACGTAGGACGTAATGAAAACACCCGCCCACTCGGC
CACAGGGGTTTGAGTGGGGAGGGTGTGGCGCCATAGTCGCTCACACTCTC
CTGACTGTGCTGGTTTTGAGACGACAGGCAGAAATTGAGGTTCATACAAA
GAAGTGATTCAATGATTCATTAAA
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protein sequence of jgi.p|Nanoce1779_2|575471

>mRNA_1135-protein ID=mRNA_1135-protein|Name=jgi.p|Nanoce1779_2|575471|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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mRNA from alignment at scaffold_2:1318915..1320465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1135 ID=mRNA_1135|Name=jgi.p|Nanoce1779_2|575471|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp|location=Sequence derived from alignment at scaffold_2:1318915..1320465- (Nannochloropsis oceanica)
ACAGCCAAACAACAAGCTACTCCACATCAGCTCCAAGCAAGTACCAAGAA
GGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCC
TTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTG
TGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAA
GGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGC
GATGGGCAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGC
GGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTC
TACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCT
CACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGG
TGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACG
GGCTTTGTGGCACGTACGTAGTAGGAGGGAAGGAGGGAGGGTGGGAAAAT
GAGGGATGAGGTAGATTGTTCTGTTGTAGATGCACCAGATATCCATTCAC
TGACTCTTGTCCCTCATCTCGTTCTTTCCTCCTCCTGCAGACCTTGCCGA
CTACGTGAAGAACGACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCC
CCGAGATGAAGGATAACGACAAGACGGTCGATTTTGTCATCCTCAAACAC
GTCCCCGCCGAGCTCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTA
CAACATGGTCGGCGCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCA
AGGGGCCCAACACTCAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGC
CAGAACACGATGAAACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGA
GGCTGTCTACATCGTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGG
ATCGCCTTGCGGAGGACCGAACCTATCAAACCAAGATGGCAGGGATGCGA
ATGCGTCGGGAGTAAGGAAGGGGTAGAGGGATGGAAGGAAAGTCAAGGGA
AGAGTGTGCGTGTTTATGAAAAAGTGTATGCATTGCTTGGCCGGCACGTG
GCATACAGCTTTCCGACAGATTGTGGAAAAGGAGGGTAGAAAAGATTATG
GTAGAGTTATTGAGGAAGGTAATGATAGATGTATTGTTTTGGGGTATCTT
GTATGTACGACTGGTGTGTACGATCAACGTATCCTCAGAAGTGTGAGCAA
AGACACACGAGAGGAAAGCAAACGAAACATGGCGCGGAGGAGGAGGCGAC
ACTGTTTATCATAGAGCGGAAAAATACGGAAAGTGTTGACACACGTAGGA
CGTAATGAAAACACCCGCCCACTCGGCCACAGGGGTTTGAGTGGGGAGGG
TGTGGCGCCATAGTCGCTCACACTCTCCTGACTGTGCTGGTTTTGAGACG
ACAGGCAGAAATTGAGGTTCATACAAAGAAGTGATTCAATGATTCATTAA
A
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Coding sequence (CDS) from alignment at scaffold_2:1318915..1320465-

>mRNA_1135 ID=mRNA_1135|Name=jgi.p|Nanoce1779_2|575471|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_2:1318915..1320465- (Nannochloropsis oceanica)
ACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTTCAAATCGTATGGC
TTCAACCCCCCCGAGATGAAGGATAACGACAAGACGGTCGATTTTGTCAT
CCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACCACCGCCACAGTGG
AAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTCCATTTCGGCGTCG
CTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCACCGGGGACGCGGC
GAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCCGTGCCTGGAGACG
CGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGACTCCGGAAGGAGCC
TCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATCAAACCAAGATGGC
AGGGATGCGAATGCGTCGGGAGTAAATGCGTCCTTACCGTGTTCTTCTCA
GCCTCGCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCACTAAGGCT
GCCGGCGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGGCCGAGGC
GCACTGCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAGGTCATGT
GTCACCCTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAATGTGAAC
TTTACGAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACGTGCTGAA
CGCGCAAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTCGACACCC
AGGCAGGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGGTGTGACG
GAGCCCTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGCCTTTCCC
GAACATGTTGGCGGAGACGGGCTTTGTGGCACACCTTGCCGACTACGTGA
AGAACGACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCCCGAGATG
AAGGATAACGACAAGACGGTCGATTTTGTCATCCTCAAACACGTCCCCGC
CGAGCTCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTACAACATGG
TCGGCGCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAAGGGGCCC
AACACTCAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGCCAGAACAC
GATGAAACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAGGCTGTCT
ACATCGTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGATCGCCTT
GCGGAGGACCGAACCTATCAAACCAAGATGGCAGGGATGCGAATGCGTCG
GGAGTAAATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGC
CTTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGT
GTGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAA
AGGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAG
CGATGGGCAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAG
CGGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTT
CTACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGC
TCACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAG
GTGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGAC
GGGCTTTGTGGCAC
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Synonyms
Publications