jgi.p|Nanoce1779_2|575468, mRNA_1134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575468
Unique NamemRNA_1134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1439
Alignment locationscaffold_2:1316853..1318418 +

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Properties
Property NameValue
TranscriptId575554
TrackFilteredModels2
ProteinId575468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1316853..1318418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575468gene_1134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575468mRNA_1134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1134CDS_1134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Nanoce1779_2|575468|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
CCCCCCACTAAACACAGCCAAACAACAAGCTACTCCACATCAGCTCCAAG
CAAGTACCAAGAAGGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTCG
CCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGC
GCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACTG
CTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACC
CTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAATGTGAACTTTACG
AGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGCA
AACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAG
GGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCCC
TTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACAT
GTTGGCGGAGACGGGCTTTGTGGCACACCTTGCCGACTACGTGAAGAACG
ACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCCCGAGATGAAGGAT
AACGACAAGACGGTCGATTTTGTCATCCTCAAACACGTCCCCGCCGAGCT
CATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTACAACATGGTCGGCG
CCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAAGGGGCCCAACACT
CAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGCCAGAACACGATGAA
ACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAGGCTGTCTACATCG
TGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGATCGCCTTGCGGAG
GACCGAACCTATCAAACCAAGATGGCAGGGATGCGAATGCGTCGGGAGTA
AGGAAGGGGTAGAGGGATGGAAGGAAAGTCAAGGGAAGAGTGTGCGTGTT
TATGAAAAAGTGTATGCATTGCTTGGCCGGCACGTGGCATACAGCTTTCC
GACAGATTGTGGAAAAGGAGGGTAGAAAAGATTATGGTAGAGTTATTGAG
GAAGGTAATGATAGATGTATTGTTTTGGGGTATCTTGTATGTACGACTGG
TGTGTACGATCAACGTATCCTCAGAAGTGTGAGCAAAGACACACGAGAGG
AAAGCAAACGAAACATGGCGCGGAGGAGGAGGCGACACTGTTTACCATAG
AGCGGAAAAATACGGAAAGTGTTGACACACGTAGGACGTAATGAAAACAC
CCGCCCACTCGGCCACAGGGGTTTGAGTGGGGAGGGTGTGGCGCCATAGT
CGCTCACACTCTCCTGACTGTGCTGGTTTTGAGACGACAGGCAGAAATTG
AGGTTCATACAAAGAAGTGATTCAATGATTCATTAAAAA
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protein sequence of jgi.p|Nanoce1779_2|575468

>mRNA_1134-protein ID=mRNA_1134-protein|Name=jgi.p|Nanoce1779_2|575468|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRPYRVLLSLAVLVPFLALPSGTKAAGATRGVTDGEPETAEAHCCGMKGL
GGAKVEVMCHPDTVAMGKTFTVNVNFTSDVKRPVDVHVDVLNAQTKAFYA
GKWEEFDTQAGAASLTIKMPEWGVTEPFLWKVFVTPRGEPFPNMLAETGF
VAHLADYVKNDCQSFKSYGFNPPEMKDNDKTVDFVILKHVPAELIPGTTA
TVEVEYNMVGAKKASISASLMRKGPNTQISSTGDAAKPGQNTMKLMLPVP
GDAPREAVYIVVTLTPEGASWEDRLAEDRTYQTKMAGMRMRRE*
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mRNA from alignment at scaffold_2:1316853..1318418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Nanoce1779_2|575468|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_2:1316853..1318418+ (Nannochloropsis oceanica)
CCCCCCACTAAACACAGCCAAACAACAAGCTACTCCACATCAGCTCCAAG
CAAGTACCAAGAAGGAATCATGCGTCCTTACCGTGTTCTTCTCAGCCTCG
CCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCACTAAGGCTGCCGGC
GCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGGCCGAGGCGCACTG
CTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAGGTCATGTGTCACC
CTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAATGTGAACTTTACG
AGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACGTGCTGAACGCGCA
AACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTCGACACCCAGGCAG
GGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGGTGTGACGGAGCCC
TTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGCCTTTCCCGAACAT
GTTGGCGGAGACGGGCTTTGTGGCACGTACGTAGTAGGAGGGAAGGAGGG
AGGGTGGGAAAATGAGGGATGAGGTAGATTGTTCTGTTGTAGATGCACCA
GATATCCATTCACTGACTCTTGTCCCTCATCTCGTTCTTTCCTCCTCCTG
CAGACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTTCAAATCGTAT
GGCTTCAACCCCCCCGAGATGAAGGATAACGACAAGACGGTCGATTTTGT
CATCCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACCACCGCCACAG
TGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTCCATTTCGGCG
TCGCTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCACCGGGGACGC
GGCGAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCCGTGCCTGGAG
ACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGACTCCGGAAGGA
GCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATCAAACCAAGAT
GGCAGGGATGCGAATGCGTCGGGAGTAAGGAAGGGGTAGAGGGATGGAAG
GAAAGTCAAGGGAAGAGTGTGCGTGTTTATGAAAAAGTGTATGCATTGCT
TGGCCGGCACGTGGCATACAGCTTTCCGACAGATTGTGGAAAAGGAGGGT
AGAAAAGATTATGGTAGAGTTATTGAGGAAGGTAATGATAGATGTATTGT
TTTGGGGTATCTTGTATGTACGACTGGTGTGTACGATCAACGTATCCTCA
GAAGTGTGAGCAAAGACACACGAGAGGAAAGCAAACGAAACATGGCGCGG
AGGAGGAGGCGACACTGTTTACCATAGAGCGGAAAAATACGGAAAGTGTT
GACACACGTAGGACGTAATGAAAACACCCGCCCACTCGGCCACAGGGGTT
TGAGTGGGGAGGGTGTGGCGCCATAGTCGCTCACACTCTCCTGACTGTGC
TGGTTTTGAGACGACAGGCAGAAATTGAGGTTCATACAAAGAAGTGATTC
AATGATTCATTAAAAA
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Coding sequence (CDS) from alignment at scaffold_2:1316853..1318418+

>mRNA_1134 ID=mRNA_1134|Name=jgi.p|Nanoce1779_2|575468|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_2:1316853..1318418+ (Nannochloropsis oceanica)
ATGCGTCCTTACCGTGTTCTTCTCAGCCTCGCCGTACTCGTGCCTTTCTT
AGCCCTCCCTTCTGGCACTAAGGCTGCCGGCGCCACCCGCGGTGTGACAG
ACGGCGAGCCCGAGACGGCCGAGGCGCACTGCTGCGGCATGAAAGGCCTG
GGAGGGGCCAAGGTGGAGGTCATGTGTCACCCTGACACAGTAGCGATGGG
CAAGACCTTCACGGTGAATGTGAACTTTACGAGCGATGTGAAGCGGCCTG
TGGACGTGCATGTGGACGTGCTGAACGCGCAAACCAAGGCGTTCTACGCA
GGGAAGTGGGAGGAGTTCGACACCCAGGCAGGGGCGGCGTCGCTCACGAT
CAAGATGCCTGAGTGGGGTGTGACGGAGCCCTTTTTGTGGAAGGTGTTTG
TGACGCCGCGTGGAGAGCCTTTCCCGAACATGTTGGCGGAGACGGGCTTT
GTGGCACACCTTGCCGACTACGTGAAGAACGACTGCCAGAGCTTCAAATC
GTATGGCTTCAACCCCCCCGAGATGAAGGATAACGACAAGACGGTCGATT
TTGTCATCCTCAAACACGTCCCCGCCGAGCTCATCCCCGGTACCACCGCC
ACAGTGGAAGTGGAGTACAACATGGTCGGCGCCAAAAAAGCTTCCATTTC
GGCGTCGCTCATGCGCAAGGGGCCCAACACTCAGATCTCATCCACCGGGG
ACGCGGCGAAGCCGGGCCAGAACACGATGAAACTGATGCTTCCCGTGCCT
GGAGACGCGCCCAGGGAGGCTGTCTACATCGTGGTGACCTTGACTCCGGA
AGGAGCCTCGTGGGAGGATCGCCTTGCGGAGGACCGAACCTATCAAACCA
AGATGGCAGGGATGCGAATGCGTCGGGAGTAAATGCGTCCTTACCGTGTT
CTTCTCAGCCTCGCCGTACTCGTGCCTTTCTTAGCCCTCCCTTCTGGCAC
TAAGGCTGCCGGCGCCACCCGCGGTGTGACAGACGGCGAGCCCGAGACGG
CCGAGGCGCACTGCTGCGGCATGAAAGGCCTGGGAGGGGCCAAGGTGGAG
GTCATGTGTCACCCTGACACAGTAGCGATGGGCAAGACCTTCACGGTGAA
TGTGAACTTTACGAGCGATGTGAAGCGGCCTGTGGACGTGCATGTGGACG
TGCTGAACGCGCAAACCAAGGCGTTCTACGCAGGGAAGTGGGAGGAGTTC
GACACCCAGGCAGGGGCGGCGTCGCTCACGATCAAGATGCCTGAGTGGGG
TGTGACGGAGCCCTTTTTGTGGAAGGTGTTTGTGACGCCGCGTGGAGAGC
CTTTCCCGAACATGTTGGCGGAGACGGGCTTTGTGGCACACCTTGCCGAC
TACGTGAAGAACGACTGCCAGAGCTTCAAATCGTATGGCTTCAACCCCCC
CGAGATGAAGGATAACGACAAGACGGTCGATTTTGTCATCCTCAAACACG
TCCCCGCCGAGCTCATCCCCGGTACCACCGCCACAGTGGAAGTGGAGTAC
AACATGGTCGGCGCCAAAAAAGCTTCCATTTCGGCGTCGCTCATGCGCAA
GGGGCCCAACACTCAGATCTCATCCACCGGGGACGCGGCGAAGCCGGGCC
AGAACACGATGAAACTGATGCTTCCCGTGCCTGGAGACGCGCCCAGGGAG
GCTGTCTACATCGTGGTGACCTTGACTCCGGAAGGAGCCTCGTGGGAGGA
TCGCCTTGCGGAGGACCGAACCTATCAAACCAAGATGGCAGGGATGCGAA
TGCGTCGGGAGTAA
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Synonyms
Publications