jgi.p|Nanoce1779_2|575447, mRNA_1132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575447
Unique NamemRNA_1132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1087
Alignment locationscaffold_2:1307229..1308719 +

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Properties
Property NameValue
TranscriptId575533
TrackFilteredModels2
ProteinId575447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1307229..1308719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575447gene_1132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575447mRNA_1132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1132CDS_1132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1132 ID=mRNA_1132|Name=jgi.p|Nanoce1779_2|575447|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp
GAGAGTAGCAATGGGAGGGCCAGCGGGCGAAGTAGGAGGGGAGGGTTGAA
ATGGAGCATTGCGCACAGGGTGGTCTTCGCCTTTGTCTGGTCGAGGCGGC
TGGCCTTGTGTAAGGATTTGTCGGCCTCAATTGTTCTTCGAACGGCTGAA
CGTCAGCGACTGCTGCCACGCTGACGAGGAAGTCCAACGCGATGATCGAC
GTTCGGTCGGTTGCCATCGTCGTTCCTTGGCTCAAGCACCTTGAAATAAC
ACCTCGTCCTCATCCTCCACCCTTCCACGCTTCTCTCAGGGAGTCTTCTT
GCCTCGTAACCCTCATTTCTAGCAGCATAATGAAGTTCTTTGTCCTGCTG
GCTCTGTTCCTGGCCACCTCCTCTACTGTGCTTGCATTCACCACTACTAG
GCGTAAGTTCTGAAGAACGGGAGGATCTGCAGTGCCTGTAATGACTTCGA
TCCAATGTGGTCATATAGATAGCTATGGGAGGGTTCATAAGGGATAGAGG
GGCTGCGCCCATGACTGACGGGAAAAGGAGATGGGAGACAAAATTCTCTT
ATCACACCGTCTGGAACCCCTCGTCCGACACAGGTTTCATCGTCCCGTGC
ACCAATCCGATGATTTCACCGTCGATCCGCAGTGTCCGGACCGCCCGAAA
TGCTCGTGGTGGTATGCTGGCCATGAAAGTCCAACCCCCGAGCCGCAAAA
ACGAGGAGAACGAACGCCTGCGAACCCTGGAGCAGGACTCAGAGAGGTGG
TTCCAAGAACAGCAACGACGGGAGGCGAACGGCGAGTTGGGATGGCTCGA
GAACCCAGCGTTTTATACCGCAGTTTTCTTCCTCTGCCCCCTCGTCATTC
TGGTGGGGGGCGCCGCAACGGGTGTCATCCCAGGCTTTGTCCCCAACACT
TACGAATACTCTACCATGGAGGAGGTGAAGAGCAGTTTCTCCTATGGAGA
TTTGACGCAGGCCGCCGAATATGCATCTGGTGCGAGTTCGTTGTTTTAAC
GAGGGAGGGAAGGAGGGAGGGAGGGACGGTGGGGCTGTCCTTCTTTTGCA
TTGAGGACATGAAGAGACGTTTGCCCATAAGATGTAG
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protein sequence of jgi.p|Nanoce1779_2|575447

>mRNA_1132-protein ID=mRNA_1132-protein|Name=jgi.p|Nanoce1779_2|575447|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MGGFIRDRGAAPMTDGKRRWETKFSYHTVWNPSSDTGFIVPCTNPMISPS
IRSVRTARNARGGMLAMKVQPPSRKNEENERLRTLEQDSERWFQEQQRRE
ANGELGWLENPAFYTAVFFLCPLVILVGGAATGVIPGFVPNTYEYSTMEE
VKSSFSYGDLTQAAEYASGASSLF*
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mRNA from alignment at scaffold_2:1307229..1308719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1132 ID=mRNA_1132|Name=jgi.p|Nanoce1779_2|575447|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_2:1307229..1308719+ (Nannochloropsis oceanica)
GAGAGTAGCAATGGGAGGGCCAGCGGGCGAAGTAGGAGGGGAGGGTTGAA ATGGAGCATTGCGCACAGGGTGGTCTTCGCCTTTGTCTGGTCGAGGCGGC TGGCCTTGTGTAAGGATTTGTCGGCCTCAATTGTTCTTCGAACGGCTGAA CGTCAGCGACTGCTGCCACGCTGACGAGGAAGTCCAACGCGATGATCGAC GTTCGGTCGGTTGCCATCGTCGTTCCTTGGCTCAAGCACCTTGAAATAAC ACCTCGTCCTCATCCTCCACCCTTCCACGCTTCTCTCAGGGAGTCTTCTT GCCTCGTAACCCTCATTTCTAGCAGCATAATGAAGTTCTTTGTCCTGCTG GCTCTGTTCCTGGCCACCTCCTCTACTGTGCTTGCATTCACCACTACTAG GCGTAAGTTCTGAAGAACGGGAGGATCTGCAGTGCCTGTAATGACTTCGA TCCAATGTGGTCATATAGATAGCTATGGGAGGGTTCATAAGGGATAGAGG GGCTGCGCCCATGACTGACGGGAAAAGGAGATGGGAGACAAAATTCTCTT ATCACACCGTCTGGAACCCCTCGTCCGACACAGGTTTCATCGTCCCGTGC ACCAATCCGATGATTTCACCGTCGATCCGCAGTGTCCGGACCGCCCGAAA TGCTCGTGGTGGTATGCTGGCCATGAAAGTCCAACCCCCGAGCCGCAAAA ACGAGGAGAACGAACGCCTGCGAACCCTGGAGCAGGACTCAGAGAGGTGG TTCCAAGAACAGCAACGACGGGAGGCGAACGGCGAGTTGGGTAAGTAAAA TCAAGTAGAAGGAGTAAAGAGCATGCCGTAGAAATCATGATGGGGCTGGG AGAGCAAGAGAAGTGATCTGTATGTCTCTGGCGGACCTCTTCCTCCCTCT CTCCTTCCTTCCCTCCATTCTCCTTTCCTCCTCTCTATTTGTGTTTCCCG CTGATGACAATTAACTGAAATCCAACACTTAGACCTTTTTCATTGAAGGT GCTGCTGAATTTCAATGAATTCGAGCTTTTTAACCCTGAGGAAAACACAC CGAACCCCACCACTCCCTCCCTCTCCCTCCCTACCTTGCATACCCTCACG GACGAGTCCAAAGCACTTCAACGCCTCACACACATGCCTCCTCCGAATTT CATTTTTCTGTCTTTTCCCTTTATTCTTAACCCTCTACCAACAGGATGGC TCGAGAACCCAGCGTTTTATACCGCAGTTTTCTTCCTCTGCCCCCTCGTC ATTCTGGTGGGGGGCGCCGCAACGGGTGTCATCCCAGGCTTTGTCCCCAA CACTTACGAATACTCTACCATGGAGGAGGTGAAGAGCAGTTTCTCCTATG GAGATTTGACGCAGGCCGCCGAATATGCATCTGGTGCGAGTTCGTTGTTT TAACGAGGGAGGGAAGGAGGGAGGGAGGGACGGTGGGGCTGTCCTTCTTT TGCATTGAGGACATGAAGAGACGTTTGCCCATAAGATGTAG
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Coding sequence (CDS) from alignment at scaffold_2:1307229..1308719+

>mRNA_1132 ID=mRNA_1132|Name=jgi.p|Nanoce1779_2|575447|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_2:1307229..1308719+ (Nannochloropsis oceanica)
ATGGGAGGGTTCATAAGGGATAGAGGGGCTGCGCCCATGACTGACGGGAA
AAGGAGATGGGAGACAAAATTCTCTTATCACACCGTCTGGAACCCCTCGT
CCGACACAGGTTTCATCGTCCCGTGCACCAATCCGATGATTTCACCGTCG
ATCCGCAGTGTCCGGACCGCCCGAAATGCTCGTGGTGGTATGCTGGCCAT
GAAAGTCCAACCCCCGAGCCGCAAAAACGAGGAGAACGAACGCCTGCGAA
CCCTGGAGCAGGACTCAGAGAGGTGGTTCCAAGAACAGCAACGACGGGAG
GCGAACGGCGAGTTGGGATGGCTCGAGAACCCAGCGTTTTATACCGCAGT
TTTCTTCCTCTGCCCCCTCGTCATTCTGGTGGGGGGCGCCGCAACGGGTG
TCATCCCAGGCTTTGTCCCCAACACTTACGAATACTCTACCATGGAGGAG
GTGAAGAGCAGTTTCTCCTATGGAGATTTGACGCAGGCCGCCGAATATGC
ATCTGGTGCGAGTTCGTTGTTTTAAATGGGAGGGTTCATAAGGGATAGAG
GGGCTGCGCCCATGACTGACGGGAAAAGGAGATGGGAGACAAAATTCTCT
TATCACACCGTCTGGAACCCCTCGTCCGACACAGGTTTCATCGTCCCGTG
CACCAATCCGATGATTTCACCGTCGATCCGCAGTGTCCGGACCGCCCGAA
ATGCTCGTGGTGGTATGCTGGCCATGAAAGTCCAACCCCCGAGCCGCAAA
AACGAGGAGAACGAACGCCTGCGAACCCTGGAGCAGGACTCAGAGAGGTG
GTTCCAAGAACAGCAACGACGGGAGGCGAACGGCGAGTTGGGATGGCTCG
AGAACCCAGCGTTTTATACCGCAGTTTTCTTCCTCTGCCCCCTCGTCATT
CTGGTGGGGGGCGCCGCAACGGGTGTCATCCCAGGCTTTGTCCCCAACAC
TTACGAATACTCTACCATGGAGGAGGTGAAGAGCAGTTTCTCCTATGGAG
ATTTGACGCAGGCCGCCGAATATGCATCTGGTGCGAGTTCGTTGTTTTAA
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Synonyms
Publications