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Properties
| Property Name | Value |
|---|
| TranscriptId | 575532 |
| Track | FilteredModels2 |
| ProteinId | 575446 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1304373..1306942 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1131 ID=mRNA_1131|Name=jgi.p|Nanoce1779_2|575446|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp
ACAGCCTCGTCACATCGCGATCGCCCAAGGAGTCCGCCGACCGTCGCGGT
GCCAGCAGCAAGAACACTGCGCAGATCCGTCACCACGTGCATAGACTACA
GCTAAGAAACCACCATCACCATGCCGCCTCAAAATGTGCACATGCTCAGC
CGGGACACCCTTCCGTCCTCAAGCTCCCTCGTCGATGAAGACGGCTCCCC
CCGCTACCCCGGCACGTCTACCCATGGGGGTGCTTCCTCCTTCTCCTCCC
CCTCCCCCACGGCAACTGCCACTGGCACAATGCCGCGCACCACCTCCATC
TCCCACCTCAGCCAAGAGGCCACCAAGGTCAAAATCATCCGCGACGCCAT
CCGGGCGGAAGACAAGCGGCTGCGCTCCCAATATTTCCTCCTGCGTGAGG
AGTGGCAAGACACAGTCGGTGCGGCTATCTTCCTGACGGCCGCCTGTACA
TGGGCCTTGCTCTCCTACGCGTGGTACATCGGCGCCCTTTCCACCCCTTT
CCTCATCATAGGCAATGCCCTGGCCATCTCGCTGTTGCATGAGATGGAGC
ACGACTTAATCCACGACTTGTATTTCAAGAAGAACAAGGCCGTTCAAAAT
GCCATGTTCGCATATATCTGGGTGATCAAGAGCAACGCCAACCCCTGGTG
GCGGCGCTACTACCACTTGCGACATCATCAGTATGCCGGGCAGGTGGTTG
ACGTGGAGGAACGTTTAATCGGACTGGGCTTGCCCTGGAACTCGTTTAAA
CGGCTCTTGGTGACGTTCACACCCGCCGCGACCCTCCTGATCGCCGATGA
CATTGTGAAAGACGACCCGGACTTCAGCAAACAGGTTCTCGTCCGGTACA
ACTCGCCTGTTATCGCCTTTTCGACTGTGGCGATGGTAATCCACCTGTGC
CACTGCCTCGGGGTAGGGGAGCTTCTGGTAGCGGCCGGCATCCTCCCCGT
GGGGTTTCACGAGGCTTTGCTTCGCTACCTCCTTCCCTTCCTCGTGCTGT
ATAATTCAACGGTGAATCTCCCGAATGTGTTGAGGCAGAGTAGCCTGGTG
ATCATATCGACGTACTGCCACTATTACGGGGACATCCCTGAGCGAGACGT
TTTTTTCCAAACGCAGATTTTGAACCATCCGTTGTTGTGGCCGTTCCAGA
TGTTTTGTTTTAATTTTGGAGCTACGCACATCATCCACCATTTTGTGACG
CGGCAGCCGTTTTATCTGCGGCAGCTGACGGCGTTTCGGGTGACACCGGT
GATGCTTGAGCAAGGATGTCGTCACAACGACCTTGGGAATCATTTCAGGG
CAAATCGATGGGGTAGGAAGGGGGAGGAGCCCTCGGTGATGATGCCGGTT
GGGGAGGAGAAGAAGGTGCTTTGAGGTAAAATCGGAGGAATCGGAGAGGG
GGAGTGAGAGGAAAAAGGAAAAAGGTTTTCGCGTAAGATGATTTTTTCTG
TCCCCCAAAAAAAGCATGATTGAGTTGGTGAAGCGGGAAGGAAACAGAAG
GAAAGTAATTGTCCCAATTTTTCATTGACGATGTTTCTCTGTGACGGGTG
TCCAGTATCTCGTTTGTGGTTTCGCTTCTGGTGGTGGTGTGGTGTGGTGT
GGTGGAGGGAGAAACAAAACATGCGTGTGTGGACTGTATCATAGTAGTAG
TATATATATACTCTCTCTCTAGGTTGACACTTCGCTGTAAAACGTCAACC
AACGCGCACCGTGCGGGATCTGTGGTTGAGGATGTGGGCGGTTGACGACG
GTGGGTGGGTGGAGGACTGACATGGGAGATGAAGAGAAAAACGAAGTAGA
GGAGGAGGATTAAGATTGAGAAGAATAGCGACAAAATCAACATCTAGGAT
TGGTTAGAAGTTCAAACGAGGAGGAAGAAGGCAGGGAAGAGGGTGGGGCC
ATGCTGAGAGGGGGAAGGGCCGCAACCTAGAGGTGCAAGGCCCTAGAAGA
CATGGAGCACTGTTAAAACAAGATCAAGAAAAATAAGGATAAGTTGAAGA
GCAAGCAGGAAACCATCATGAGGAAACAACGAATGCGTTTTTTA back to topprotein sequence of jgi.p|Nanoce1779_2|575446 >mRNA_1131-protein ID=mRNA_1131-protein|Name=jgi.p|Nanoce1779_2|575446|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MPPQNVHMLSRDTLPSSSSLVDEDGSPRYPGTSTHGGASSFSSPSPTATA
TGTMPRTTSISHLSQEATKVKIIRDAIRAEDKRLRSQYFLLREEWQDTVG
AAIFLTAACTWALLSYAWYIGALSTPFLIIGNALAISLLHEMEHDLIHDL
YFKKNKAVQNAMFAYIWVIKSNANPWWRRYYHLRHHQYAGQVVDVEERLI
GLGLPWNSFKRLLVTFTPAATLLIADDIVKDDPDFSKQVLVRYNSPVIAF
STVAMVIHLCHCLGVGELLVAAGILPVGFHEALLRYLLPFLVLYNSTVNL
PNVLRQSSLVIISTYCHYYGDIPERDVFFQTQILNHPLLWPFQMFCFNFG
ATHIIHHFVTRQPFYLRQLTAFRVTPVMLEQGCRHNDLGNHFRANRWGRK
GEEPSVMMPVGEEKKVL* back to topmRNA from alignment at scaffold_2:1304373..1306942+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1131 ID=mRNA_1131|Name=jgi.p|Nanoce1779_2|575446|organism=Nannochloropsis oceanica|type=mRNA|length=2570bp|location=Sequence derived from alignment at scaffold_2:1304373..1306942+ (Nannochloropsis oceanica)
ACAGCCTCGTCACATCGCGATCGCCCAAGGAGTCCGCCGACCGTCGCGGT
GCCAGCAGCAAGAACACTGCGCAGATCCGTCACCACGTGCATAGACTACA
GCTAAGAAACCACCATCACCATGCCGCCTCAAAATGTGCACATGCTCAGC
CGGGACACCCTTCCGTCCTCAAGCTCCCTCGTCGGTACGTGTGACAATTT
CTTATCTACCGCTGCCTTCCAGAGCTCGTGCGAAGAAAACCTGCGTCGCA
TGCCGCAACCAGAGTTTGTCGGGCATCGTGTCCTATGCCTTGATCCCGGC
AGGGATATAACCCCTTTGTCATTCCTGTGTCCCTGTGTGACCCATCCTTC
GCCCGGCTGTGCTTGTACCACCTGGCTTCATTCTCTTGTGTCCCGTTCTT
TCGATGTTCCACCTCACGCTTGTGTCCCTCCCACTTCCCCCCTCCTGACA
GATGAAGACGGCTCCCCCCGCTACCCCGGCACGTCTACCCATGGGGGTGC
TTCCTCCTTCTCCTCCCCCTCCCCCACGGCAACTGCCACTGGCACAATGC
CGCGCACCACCTCCATCTCCCACCTCAGCCAAGAGGCCACCAAGGTCAAA
ATCATCCGCGACGCCATCCGGGCGGAAGACAAGCGGCTGCGCTCCCAATA
TTTCCTCCTGCGTGAGGAGTGGCAAGACACAGTCGGTGCGGCTATCTTCC
TGACGGCCGCCTGTACATGGGCCTTGCTCTCCTACGCGTGGTACATCGGC
GCCCTTTCCACCCCTTTCCTCATCATAGGCAATGCCCTGGCCATCTCGCT
GTTGCATGAGATGGAGCACGACTTAATCCACGACTTGTATTTCAAGAAGA
ACAAGGCCGTTCAAAATGCCATGTTCGCATATATCTGGGTGATCAAGAGG
TACGTCTTCACGACTATTCTTCCTCCCTCTCTCCAATCCACCTCGCTGCT
GCTGGTCCCTCCCTTGCGCGTGCCAGTGGCTGCACGTGATGGAAGACATA
TTGAATCCCTCTTCTCCCTCCATCTCATCTTCACTCCATGACAAGAGAAA
CGGTGATAGTCATCGCGCCAGCAGTTTCACTGGACCCTCCCCCTTCTCCC
TCCCTCCCCCTCTTCTCTCTCTCCCCCCTCCCTCCCTCCCTCACTACCCG
TCCTCCAGCAACGCCAACCCCTGGTGGCGGCGCTACTACCACTTGCGACA
TCATCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAACGTTTAATCGGAC
TGGGCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTGACGTTCACACCC
GCCGCGACCCTCCTGATCGCCGATGACATTGTGAAAGACGACCCGGACTT
CAGCAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTATCGCCTTTTCGA
CTGTGGCGATGGTAATCCACCTGTGCCACTGCCTCGGGGTAGGGGAGCTT
CTGGTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGAGGCTTTGCTTCG
CTACCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGGTGAATCTCCCGA
ATGTGTTGAGGCAGAGTAGCCTGGTGATCATATCGACGTACTGCCACTAT
TACGGGGACATCCCTGAGCGAGACGTTTTTTTCCAAACGCAGATTTTGAA
CCATCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTAATTTTGGAGCTA
CGCACATCATCCACCATTTTGTGACGCGGCAGCCGTTTTATCTGCGGCAG
CTGACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCAAGGATGTCGTCA
CAACGACCTTGGGAATCATTTCAGGGCAAATCGATGGGGTAGGAAGGGGG
AGGAGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAGAAGGTGCTTTGA
GGTAAAATCGGAGGAATCGGAGAGGGGGAGTGAGAGGAAAAAGGAAAAAG
GTTTTCGCGTAAGATGATTTTTTCTGTCCCCCAAAAAAAGCATGATTGAG
TTGGTGAAGCGGGAAGGAAACAGAAGGAAAGTAATTGTCCCAATTTTTCA
TTGACGATGTTTCTCTGTGACGGGTGTCCAGTATCTCGTTTGTGGTTTCG
CTTCTGGTGGTGGTGTGGTGTGGTGTGGTGGAGGGAGAAACAAAACATGC
GTGTGTGGACTGTATCATAGTAGTAGTATATATATACTCTCTCTCTAGGT
TGACACTTCGCTGTAAAACGTCAACCAACGCGCACCGTGCGGGATCTGTG
GTTGAGGATGTGGGCGGTTGACGACGGTGGGTGGGTGGAGGACTGACATG
GGAGATGAAGAGAAAAACGAAGTAGAGGAGGAGGATTAAGATTGAGAAGA
ATAGCGACAAAATCAACATCTAGGATTGGTTAGAAGTTCAAACGAGGAGG
AAGAAGGCAGGGAAGAGGGTGGGGCCATGCTGAGAGGGGGAAGGGCCGCA
ACCTAGAGGTGCAAGGCCCTAGAAGACATGGAGCACTGTTAAAACAAGAT
CAAGAAAAATAAGGATAAGTTGAAGAGCAAGCAGGAAACCATCATGAGGA
AACAACGAATGCGTTTTTTA back to topCoding sequence (CDS) from alignment at scaffold_2:1304373..1306942+ >mRNA_1131 ID=mRNA_1131|Name=jgi.p|Nanoce1779_2|575446|organism=Nannochloropsis oceanica|type=CDS|length=3762bp|location=Sequence derived from alignment at scaffold_2:1304373..1306942+ (Nannochloropsis oceanica)
ATGCCGCCTCAAAATGTGCACATGCTCAGCCGGGACACCCTTCCGTCCTC
AAGCTCCCTCGTCGATGAAGACGGCTCCCCCCGCTACCCCGGCACGTCTA
CCCATGGGGGTGCTTCCTCCTTCTCCTCCCCCTCCCCCACGGCAACTGCC
ACTGGCACAATGCCGCGCACCACCTCCATCTCCCACCTCAGCCAAGAGGC
CACCAAGGTCAAAATCATCCGCGACGCCATCCGGGCGGAAGACAAGCGGC
TGCGCTCCCAATATTTCCTCCTGCGTGAGGAGTGGCAAGACACAGTCGGT
GCGGCTATCTTCCTGACGGCCGCCTGTACATGGGCCTTGCTCTCCTACGC
GTGGTACATCGGCGCCCTTTCCACCCCTTTCCTCATCATAGGCAATGCCC
TGGCCATCTCGCTGTTGCATGAGATGGAGCACGACTTAATCCACGACTTG
TATTTCAAGAAGAACAAGGCCGTTCAAAATGCCATGTTCGCATATATCTG
GGTGATCAAGAGCAACGCCAACCCCTGGTGGCGGCGCTACTACCACTTGC
GACATCATCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAACGTTTAATC
GGACTGGGCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTGACGTTCAC
ACCCGCCGCGACCCTCCTGATCGCCGATGACATTGTGAAAGACGACCCGG
ACTTCAGCAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTATCGCCTTT
TCGACTGTGGCGATGGTAATCCACCTGTGCCACTGCCTCGGGGTAGGGGA
GCTTCTGGTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGAGGCTTTGC
TTCGCTACCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGGTGAATCTC
CCGAATGTGTTGAGGCAGAGTAGCCTGGTGATCATATCGACGTACTGCCA
CTATTACGGGGACATCCCTGAGCGAGACGTTTTTTTCCAAACGCAGATTT
TGAACCATCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTAATTTTGGA
GCTACGCACATCATCCACCATTTTGTGACGCGGCAGCCGTTTTATCTGCG
GCAGCTGACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCAAGGATGTC
GTCACAACGACCTTGGGAATCATTTCAGGGCAAATCGATGGGGTAGGAAG
GGGGAGGAGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAGAAGGTGCT
TTGAATGCCGCCTCAAAATGTGCACATGCTCAGCCGGGACACCCTTCCGT
CCTCAAGCTCCCTCGTCGATGAAGACGGCTCCCCCCGCTACCCCGGCACG
TCTACCCATGGGGGTGCTTCCTCCTTCTCCTCCCCCTCCCCCACGGCAAC
TGCCACTGGCACAATGCCGCGCACCACCTCCATCTCCCACCTCAGCCAAG
AGGCCACCAAGGTCAAAATCATCCGCGACGCCATCCGGGCGGAAGACAAG
CGGCTGCGCTCCCAATATTTCCTCCTGCGTGAGGAGTGGCAAGACACAGT
CGGTGCGGCTATCTTCCTGACGGCCGCCTGTACATGGGCCTTGCTCTCCT
ACGCGTGGTACATCGGCGCCCTTTCCACCCCTTTCCTCATCATAGGCAAT
GCCCTGGCCATCTCGCTGTTGCATGAGATGGAGCACGACTTAATCCACGA
CTTGTATTTCAAGAAGAACAAGGCCGTTCAAAATGCCATGTTCGCATATA
TCTGGGTGATCAAGAGCAACGCCAACCCCTGGTGGCGGCGCTACTACCAC
TTGCGACATCATCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAACGTTT
AATCGGACTGGGCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTGACGT
TCACACCCGCCGCGACCCTCCTGATCGCCGATGACATTGTGAAAGACGAC
CCGGACTTCAGCAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTATCGC
CTTTTCGACTGTGGCGATGGTAATCCACCTGTGCCACTGCCTCGGGGTAG
GGGAGCTTCTGGTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGAGGCT
TTGCTTCGCTACCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGGTGAA
TCTCCCGAATGTGTTGAGGCAGAGTAGCCTGGTGATCATATCGACGTACT
GCCACTATTACGGGGACATCCCTGAGCGAGACGTTTTTTTCCAAACGCAG
ATTTTGAACCATCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTAATTT
TGGAGCTACGCACATCATCCACCATTTTGTGACGCGGCAGCCGTTTTATC
TGCGGCAGCTGACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCAAGGA
TGTCGTCACAACGACCTTGGGAATCATTTCAGGGCAAATCGATGGGGTAG
GAAGGGGGAGGAGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAGAAGG
TGCTTTGAATGCCGCCTCAAAATGTGCACATGCTCAGCCGGGACACCCTT
CCGTCCTCAAGCTCCCTCGTCGATGAAGACGGCTCCCCCCGCTACCCCGG
CACGTCTACCCATGGGGGTGCTTCCTCCTTCTCCTCCCCCTCCCCCACGG
CAACTGCCACTGGCACAATGCCGCGCACCACCTCCATCTCCCACCTCAGC
CAAGAGGCCACCAAGGTCAAAATCATCCGCGACGCCATCCGGGCGGAAGA
CAAGCGGCTGCGCTCCCAATATTTCCTCCTGCGTGAGGAGTGGCAAGACA
CAGTCGGTGCGGCTATCTTCCTGACGGCCGCCTGTACATGGGCCTTGCTC
TCCTACGCGTGGTACATCGGCGCCCTTTCCACCCCTTTCCTCATCATAGG
CAATGCCCTGGCCATCTCGCTGTTGCATGAGATGGAGCACGACTTAATCC
ACGACTTGTATTTCAAGAAGAACAAGGCCGTTCAAAATGCCATGTTCGCA
TATATCTGGGTGATCAAGAGCAACGCCAACCCCTGGTGGCGGCGCTACTA
CCACTTGCGACATCATCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAAC
GTTTAATCGGACTGGGCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTG
ACGTTCACACCCGCCGCGACCCTCCTGATCGCCGATGACATTGTGAAAGA
CGACCCGGACTTCAGCAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTA
TCGCCTTTTCGACTGTGGCGATGGTAATCCACCTGTGCCACTGCCTCGGG
GTAGGGGAGCTTCTGGTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGA
GGCTTTGCTTCGCTACCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGG
TGAATCTCCCGAATGTGTTGAGGCAGAGTAGCCTGGTGATCATATCGACG
TACTGCCACTATTACGGGGACATCCCTGAGCGAGACGTTTTTTTCCAAAC
GCAGATTTTGAACCATCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTA
ATTTTGGAGCTACGCACATCATCCACCATTTTGTGACGCGGCAGCCGTTT
TATCTGCGGCAGCTGACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCA
AGGATGTCGTCACAACGACCTTGGGAATCATTTCAGGGCAAATCGATGGG
GTAGGAAGGGGGAGGAGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAG
AAGGTGCTTTGA back to top
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